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8JD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1MCPsing1.53Å1.51Å
CPS1sing1.81Å1.66Å
S1C2sing1.81Å1.78Å
C2C3sing1.53Å1.50Å
O5C5doub1.21Å1.23Å
C3N4sing1.47Å1.46Å
C5N4sing1.35Å1.34Å
C5C6sing1.51Å1.52Å
C6C7sing1.53Å1.54Å
C7N8sing1.46Å1.46Å
C14C11sing1.53Å1.52Å
N6AC6Asing1.38Å1.35Å
N8C9sing1.35Å1.34Å
O10C10sing1.43Å1.44Å
C6AN1Adoub1.33Å1.35ÅAromatic
C6AC5Asing1.41Å1.47ÅAromatic
C9C10sing1.51Å1.51Å
C9O9doub1.21Å1.23Å
C11C10sing1.53Å1.54Å
C11C12sing1.53Å1.53Å
C11C13sing1.53Å1.53Å
N1AC2Asing1.32Å1.35ÅAromatic
C12O6Asing1.43Å1.42Å
N7AC5Asing1.35Å1.34ÅAromatic
N7AC8Adoub1.30Å1.35ÅAromatic
C5AC4Adoub1.41Å1.47ÅAromatic
C2AN3Adoub1.32Å1.36ÅAromatic
C8AN9Asing1.36Å1.36ÅAromatic
O6AP2Asing1.61Å1.61Å
C4AN3Asing1.33Å1.36ÅAromatic
C4AN9Asing1.37Å1.33ÅAromatic
O4AP2Adoub1.48Å1.50Å
O2AP1Adoub1.48Å1.51Å
O3AP2Asing1.61Å1.62Å
O3AP1Asing1.61Å1.62Å
N9AC1Xsing1.47Å1.48Å
P2AO5Asing1.61Å1.51Å
P1AO1Asing1.61Å1.51Å
P1AO5Xsing1.61Å1.59Å
C1XO4Xsing1.44Å1.42Å
C1XC2Xsing1.54Å1.54Å
O5XC5Xsing1.43Å1.43Å
O4XC4Xsing1.44Å1.44Å
C2XO2Xsing1.43Å1.44Å
C2XC3Xsing1.55Å1.51Å
C5XC4Xsing1.53Å1.52Å
C4XC3Xsing1.55Å1.53Å
C3XO3Xsing1.43Å1.43Å
N6AH1sing0.97Å1.00Å
N6AH2sing0.97Å1.00Å
C2AH3sing1.08Å1.08Å
C8AH4sing1.08Å1.08Å
C1MH5sing1.09Å1.10Å
C1MH6sing1.09Å1.10Å
C1MH7sing1.09Å1.10Å
CPH8sing1.09Å1.10Å
CPH9sing1.09Å1.10Å
O3XH10sing0.97Å0.95Å
N4H11sing0.97Å1.00Å
C6H12sing1.09Å1.10Å
C6H13sing1.09Å1.10Å
C7H14sing1.09Å1.10Å
C7H15sing1.09Å1.10Å
N8H16sing0.97Å1.00Å
C13H17sing1.09Å1.10Å
C13H18sing1.09Å1.10Å
C13H19sing1.09Å1.10Å
C14H20sing1.09Å1.10Å
C14H21sing1.09Å1.10Å
C14H22sing1.09Å1.10Å
C12H23sing1.09Å1.10Å
C12H24sing1.09Å1.10Å
O1AH25sing0.97Å0.95Å
C4XH26sing1.09Å1.10Å
C1XH27sing1.09Å1.10Å
C2XH28sing1.09Å1.10Å
O2XH29sing0.97Å0.95Å
C3XH30sing1.09Å1.10Å
C5XH31sing1.09Å1.10Å
C5XH32sing1.09Å1.10Å
O5AH33sing0.97Å0.95Å
C10H34sing1.09Å1.10Å
O10H35sing0.97Å0.95Å
C3H36sing1.09Å1.10Å
C3H37sing1.09Å1.10Å
C2H38sing1.09Å1.10Å
C2H39sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1MCPS1117.6°109.5°
CPC1MH5109.5°109.4°
CPC1MH6109.5°109.5°
CPC1MH7109.4°109.5°
C1MCPH8107.4°109.5°
C1MCPH9107.4°109.5°
CPS1C297.7°103.0°
S1CPH8107.4°109.4°
S1CPH9107.4°109.5°
S1C2C3107.9°109.5°
S1C2H38109.9°109.5°
S1C2H39109.9°109.4°
C2C3N4114.4°109.4°
C2C3H36108.2°109.5°
C2C3H37108.2°109.5°
C3C2H38109.9°109.5°
C3C2H39109.9°109.5°
O5C5N4123.1°120.0°
O5C5C6120.6°120.0°
C3N4C5122.6°120.0°
C3N4H11118.7°120.0°
N4C3H36108.2°109.5°
N4C3H37108.3°109.5°
N4C5C6116.3°120.0°
C5N4H11118.7°120.0°
C5C6C7111.6°109.5°
C5C6H12108.9°109.4°
C5C6H13108.9°109.5°
C6C7N8114.9°109.5°
C7C6H12108.9°109.5°
C7C6H13108.9°109.5°
C6C7H14108.1°109.5°
C6C7H15108.1°109.5°
C7N8C9122.9°120.0°
N8C7H14108.1°109.4°
N8C7H15108.1°109.5°
C7N8H16118.5°120.0°
C14C11C10109.8°109.5°
C14C11C12109.1°109.5°
C14C11C13109.4°109.5°
C11C14H20109.5°109.5°
C11C14H21109.5°109.4°
C11C14H22109.5°109.5°
N6AC6AN1A122.7°120.8°
N6AC6AC5A118.7°120.8°
C6AN6AH1109.5°120.0°
C6AN6AH2109.4°120.0°
N8C9C10118.2°120.0°
N8C9O9123.0°120.0°
C9N8H16118.6°119.9°
O10C10C9112.7°109.5°
O10C10C11109.5°109.5°
O10C10H34108.1°109.5°
C10O10H35109.5°114.0°
N1AC6AC5A118.6°118.5°
C6AN1AC2A120.8°121.2°
C6AC5AN7A134.6°134.7°
C6AC5AC4A117.3°118.2°
C10C9O9118.8°120.0°
C9C10C11111.9°109.4°
C9C10H34107.3°109.5°
C10C11C12107.9°109.5°
C10C11C13110.0°109.5°
C11C10H34107.0°109.5°
C12C11C13110.5°109.4°
C11C12O6A110.5°109.4°
C11C12H23109.2°109.5°
C11C12H24109.2°109.5°
C11C13H17109.5°109.5°
C11C13H18109.5°109.5°
C11C13H19109.5°109.5°
N1AC2AN3A124.7°122.5°
N1AC2AH3117.7°118.8°
C12O6AP2A123.5°123.0°
O6AC12H23109.2°109.5°
O6AC12H24109.2°109.5°
C5AN7AC8A106.8°109.5°
N7AC5AC4A108.0°107.1°
N7AC8AN9A110.8°109.9°
N7AC8AH4124.6°125.0°
C5AC4AN3A119.1°119.1°
C5AC4AN9A104.8°106.0°
C2AN3AC4A119.5°120.6°
N3AC2AH3117.6°118.7°
C8AN9AC4A109.6°107.5°
C8AN9AC1X126.8°126.2°
N9AC8AH4124.6°125.0°
O6AP2AO4A110.6°109.5°
O6AP2AO3A99.2°109.5°
O6AP2AO5A105.1°109.5°
N3AC4AN9A136.0°135.0°
C4AN9AC1X123.4°126.3°
O4AP2AO3A108.7°109.5°
O4AP2AO5A119.9°109.5°
O2AP1AO3A107.4°109.5°
O2AP1AO1A117.7°109.5°
O2AP1AO5X106.5°109.5°
P2AO3AP1A129.6°134.0°
O3AP2AO5A111.3°109.4°
O3AP1AO1A113.7°109.5°
O3AP1AO5X99.4°109.5°
N9AC1XO4X115.0°110.4°
N9AC1XC2X107.8°110.4°
N9AC1XH27108.9°110.3°
P2AO5AH33109.5°114.0°
O1AP1AO5X110.3°109.4°
P1AO1AH25109.5°114.0°
P1AO5XC5X120.2°123.0°
O4XC1XC2X107.1°104.8°
C1XO4XC4X108.4°105.3°
O4XC1XH27109.6°110.3°
C1XC2XO2X113.3°110.5°
C1XC2XC3X101.1°104.1°
C2XC1XH27108.2°110.5°
C1XC2XH28109.1°110.5°
O5XC5XC4X109.8°109.5°
O5XC5XH31109.4°109.4°
O5XC5XH32109.4°109.5°
O4XC4XC5X107.8°110.5°
O4XC4XC3X107.6°104.8°
O4XC4XH26110.5°110.3°
O2XC2XC3X113.2°110.5°
O2XC2XH28110.4°110.4°
C2XO2XH29109.5°114.0°
C2XC3XC4X103.3°104.0°
C2XC3XO3X111.0°110.5°
C3XC2XH28109.4°110.6°
C2XC3XH30110.9°110.5°
C5XC4XC3X112.5°110.4°
C5XC4XH26109.3°110.4°
C4XC5XH31109.4°109.5°
C4XC5XH32109.4°109.5°
C4XC3XO3X108.5°110.5°
C3XC4XH26109.1°110.4°
C4XC3XH30110.5°110.5°
C3XO3XH10109.5°114.0°
O3XC3XH30112.2°110.6°
H1N6AH2109.5°120.0°
H5C1MH6109.5°109.5°
H5C1MH7109.5°109.5°
H6C1MH7109.5°109.4°
H8CPH9109.5°109.4°
H12C6H13109.5°109.5°
H14C7H15109.4°109.5°
H17C13H18109.4°109.5°
H17C13H19109.5°109.5°
H18C13H19109.5°109.4°
H20C14H21109.5°109.5°
H20C14H22109.5°109.5°
H21C14H22109.5°109.4°
H23C12H24109.5°109.5°
H31C5XH32109.4°109.5°
H36C3H37109.5°109.5°
H38C2H39109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1MCPS1H8121.2°120.0°
C1MCPS1H9121.2°120.0°
C1MCPS1C2118.1°180.0°
CPC1MH5H6120.0°120.0°
CPC1MH5H7120.0°120.0°
CPC1MH6H7120.0°120.0°
C1MCPH8H9116.3°120.0°
CPS1C2C3166.1°180.0°
S1CPC1MH5180.0°60.0°
S1CPC1MH660.0°60.0°
S1CPC1MH760.0°180.0°
S1CPH8H9116.3°120.0°
CPS1C2H3846.4°60.0°
CPS1C2H3974.1°60.0°
S1C2C3H38119.8°120.0°
S1C2C3H39119.8°120.0°
S1C2C3N4153.4°180.0°
C2S1CPH83.1°60.0°
C2S1CPH9120.8°60.0°
S1C2C3H3632.7°60.0°
S1C2C3H3785.9°60.0°
S1C2H38H39120.7°119.9°
C2C3N4H36120.7°120.0°
C2C3N4H37120.7°120.0°
C2C3N4C598.2°180.0°
C2C3N4H1181.8°0.0°
C2C3H36H37117.8°120.0°
C3C2H38H39120.7°120.1°
O5C5N4C39.2°0.0°
O5C5N4C6178.3°180.0°
O5C5C6C767.4°0.0°
O5C5N4H11170.8°180.0°
O5C5C6H1252.9°120.0°
O5C5C6H13172.3°120.0°
C3N4C5H11180.0°179.9°
C3N4C5C6169.1°180.0°
N4C3H36H37117.8°120.0°
N4C3C2H3886.8°60.0°
N4C3C2H3933.6°60.0°
N4C5C6C7110.9°180.0°
N4C5C6H12128.7°60.0°
N4C5C6H139.4°60.0°
C5N4C3H36141.1°60.0°
C5N4C3H3722.6°60.0°
C5C6C7H12120.3°119.9°
C5C6C7H13120.3°120.0°
C5C6C7N850.5°180.0°
C6C5N4H1110.9°0.0°
C5C6H12H13119.0°120.0°
C5C6C7H1470.3°60.0°
C5C6C7H15171.3°60.0°
C6C7N8H14120.8°120.0°
C6C7N8H15120.8°120.0°
C6C7N8C993.8°180.0°
C7C6H12H13119.0°120.0°
C6C7H14H15117.6°120.1°
C6C7N8H1686.2°0.0°
C7N8C9H16180.0°179.9°
C7N8C9C10178.6°174.9°
C7N8C9O91.8°5.2°
N8C7C6H12170.9°60.1°
N8C7C6H1369.8°60.0°
N8C7H14H15117.5°120.0°
C14C11C10O1055.1°174.1°
C14C11C10C970.7°65.9°
C14C11C10C12118.9°120.0°
C14C11C10C13120.5°120.0°
C14C11C12C13120.4°120.0°
C14C11C12O6A161.1°60.0°
C14C11C13H17180.0°180.0°
C14C11C13H1860.0°60.0°
C14C11C13H1960.0°60.0°
C11C14H20H21120.0°120.0°
C11C14H20H22120.0°120.0°
C11C14H21H22120.0°120.0°
C14C11C12H2341.0°180.0°
C14C11C12H2478.7°60.0°
C14C11C10H34172.1°54.0°
N6AC6AN1AC5A179.4°179.7°
N6AC6AN1AC2A179.5°180.0°
N6AC6AC5AN7A0.8°0.0°
N6AC6AC5AC4A179.6°179.8°
C6AN6AH1H2120.0°179.7°
N8C9C10O1032.5°11.7°
N8C9C10O9179.6°180.0°
N8C9C10C1191.5°108.3°
C9N8C7H14145.4°60.0°
C9N8C7H1527.0°60.0°
N8C9C10H34151.5°131.7°
O10C10C9C11124.0°120.0°
O10C10C9H34118.9°120.0°
O10C10C9O9147.9°168.2°
O10C10C11H34117.0°120.0°
O10C10C11C1263.8°54.0°
O10C10C11C13175.6°65.9°
N1AC6AC5AN7A179.8°179.7°
N1AC6AC5AC4A0.9°0.5°
C6AN1AC2AN3A0.3°0.0°
N1AC6AN6AH10.0°0.1°
N1AC6AN6AH2120.0°179.7°
C6AN1AC2AH3179.6°180.0°
C5AC6AN1AC2A0.1°0.3°
C6AC5AN7AC4A178.9°179.7°
C6AC5AN7AC8A179.5°179.2°
C6AC5AC4AN3A1.4°0.5°
C6AC5AC4AN9A179.5°179.7°
C5AC6AN6AH1179.4°179.7°
C5AC6AN6AH259.4°0.6°
C9C10C11H34117.2°120.0°
C9C10C11C12170.4°174.0°
C9C10C11C1349.8°54.1°
C10C9N8H161.3°5.1°
C9C10O10H35180.0°60.0°
O9C9C10C1188.1°71.8°
O9C9N8H16178.2°174.9°
O9C9C10H3428.9°48.2°
C10C11C12C13120.3°120.0°
C10C11C12O6A79.5°180.0°
C10C11C13H1759.2°60.0°
C10C11C13H1860.8°180.0°
C10C11C13H19179.2°60.1°
C10C11C14H20180.0°64.4°
C10C11C14H2160.0°175.6°
C10C11C14H2260.0°55.6°
C10C11C12H23160.3°60.0°
C10C11C12H2440.6°60.1°
C11C10O10H3554.6°60.0°
C11C12O6AH23120.1°120.0°
C11C12O6AH24120.1°120.0°
C11C12O6AP2A152.7°180.0°
C12C11C13H1759.8°60.0°
C12C11C13H18179.8°60.0°
C12C11C13H1960.2°180.0°
C12C11C14H2061.9°175.6°
C12C11C14H21178.1°55.6°
C12C11C14H2258.1°64.4°
C11C12H23H24119.6°120.0°
C12C11C10H3453.2°66.0°
C13C11C12O6A40.7°60.0°
C11C13H17H18120.0°120.0°
C11C13H17H19120.0°120.0°
C11C13H18H19120.0°120.0°
C13C11C14H2059.1°55.6°
C13C11C14H2160.9°64.4°
C13C11C14H22179.1°175.7°
C13C11C12H2379.4°60.0°
C13C11C12H24160.9°180.0°
C13C11C10H3467.4°174.0°
N1AC2AN3AH3180.0°180.0°
N1AC2AN3AC4A0.1°0.0°
C12O6AP2AO4A53.0°55.0°
C12O6AP2AO3A61.1°175.0°
C12O6AP2AO5A176.3°65.1°
O6AC12H23H24119.5°120.0°
C5AN7AC8AN9A0.4°0.7°
N7AC5AC4AN3A179.5°179.7°
N7AC5AC4AN9A1.4°0.1°
C5AN7AC8AH4179.6°180.0°
C8AN7AC5AC4A0.6°0.5°
N7AC8AN9AH4180.0°179.3°
N7AC8AN9AC4A1.3°0.6°
N7AC8AN9AC1X176.4°179.4°
C5AC4AN3AC2A0.9°0.3°
C5AC4AN9AC8A1.6°0.3°
C5AC4AN3AN9A177.5°179.7°
C5AC4AN9AC1X176.9°179.8°
C2AN3AC4AN9A178.4°180.0°
C8AN9AC4AN3A179.3°180.0°
C8AN9AC4AC1X175.3°180.0°
C8AN9AC1XO4X57.3°23.5°
C8AN9AC1XC2X62.1°91.9°
C8AN9AC1XH27179.2°145.7°
O6AP2AO4AO3A107.9°120.0°
O6AP2AO4AO5A122.5°120.1°
O6AP2AO3AO5A110.2°120.0°
O6AP2AO3AP1A173.6°160.0°
P2AO6AC12H2387.1°60.0°
P2AO6AC12H2432.6°60.0°
O6AP2AO5AH33125.2°59.9°
N3AC4AN9AC1X5.4°0.0°
C4AN3AC2AH3179.9°180.0°
C4AN9AC1XO4X128.2°156.4°
C4AN9AC1XC2X112.4°88.2°
C4AN9AC8AH4178.6°179.9°
C4AN9AC1XH274.7°34.2°
O4AP2AO3AO5A134.2°120.0°
O4AP2AO3AP1A70.8°40.0°
O4AP2AO5AH330.0°180.0°
O2AP1AO3AP2A158.5°45.0°
O2AP1AO3AO1A132.0°120.0°
O2AP1AO3AO5X110.8°120.0°
O2AP1AO1AO5X122.5°120.0°
O2AP1AO5XC5X62.5°55.0°
O2AP1AO1AH250.0°179.9°
P2AO3AP1AO1A26.5°75.0°
P2AO3AP1AO5X90.7°165.0°
O3AP2AO5AH33128.4°60.1°
P1AO3AP2AO5A63.4°80.0°
O3AP1AO1AO5X110.7°120.0°
O3AP1AO5XC5X174.0°175.0°
O3AP1AO1AH25126.8°59.9°
N9AC1XO4XC2X119.8°118.8°
N9AC1XO4XH27123.1°122.2°
N9AC1XC2XH27117.6°122.3°
N9AC1XO4XC4X140.7°159.3°
N9AC1XC2XO2X80.4°98.5°
N9AC1XC2XC3X158.2°142.8°
C1XN9AC8AH43.6°0.2°
N9AC1XC2XH2843.0°24.1°
O1AP1AO5XC5X66.3°65.0°
P1AO5XC5XC4X147.3°180.0°
O5XP1AO1AH25122.5°60.1°
P1AO5XC5XH3192.6°60.0°
P1AO5XC5XH3227.3°60.0°
O4XC1XC2XH27118.1°118.8°
O4XC1XC2XO2X155.3°142.6°
O4XC1XC2XC3X33.9°24.0°
C1XO4XC4XC5X120.8°159.4°
C1XO4XC4XC3X0.8°40.5°
C1XO4XC4XH26119.8°78.3°
O4XC1XC2XH2881.3°94.8°
C2XC1XO4XC4X20.9°40.5°
C1XC2XO2XC3X114.3°114.7°
C1XC2XO2XH28122.7°122.6°
C1XC2XC3XH28115.0°118.7°
C1XC2XC3XC4X32.7°0.0°
C1XC2XC3XO3X83.4°118.6°
C1XC2XO2XH29180.0°179.9°
C1XC2XC3XH30151.2°118.6°
O5XC5XC4XO4X76.9°69.5°
O5XC5XC4XH31120.1°120.0°
O5XC5XC4XH32120.1°120.0°
O5XC5XC4XC3X41.6°175.0°
O5XC5XC4XH26163.0°52.8°
O5XC5XH31H32119.8°120.0°
O4XC4XC3XC2X22.1°23.9°
O4XC4XC5XC3X118.5°115.5°
O4XC4XC5XH26120.1°122.3°
O4XC4XC3XH26119.9°118.8°
O4XC4XC3XO3X95.8°142.6°
C4XO4XC1XH2796.2°78.5°
O4XC4XC3XH30140.8°94.6°
O4XC4XC5XH31163.0°50.4°
O4XC4XC5XH3243.1°170.5°
O2XC2XC3XH28123.6°122.6°
O2XC2XC3XC4X154.2°118.7°
O2XC2XC3XO3X38.0°0.0°
O2XC2XC1XH2737.2°23.8°
O2XC2XC3XH3087.4°122.7°
C2XC3XC4XC5X96.5°142.9°
C2XC3XC4XO3X117.9°118.6°
C2XC3XC4XH30118.7°118.6°
C2XC3XO3XH30124.7°122.7°
C2XC3XO3XH10180.0°65.4°
C2XC3XC4XH26142.0°94.8°
C3XC2XC1XH2784.2°94.9°
C3XC2XO2XH2965.7°65.3°
C5XC4XC3XH26121.5°122.2°
C5XC4XC3XO3X145.6°98.5°
C5XC4XC3XH3022.2°24.3°
C4XC5XH31H32119.9°120.0°
C4XC3XO3XH30122.4°122.7°
C4XC3XO3XH1067.1°180.0°
C4XC3XC2XH2882.2°118.7°
C3XC4XC5XH3178.5°65.0°
C3XC4XC5XH32161.6°55.0°
O3XC3XC4XH2624.1°23.8°
O3XC3XC2XH28161.6°122.6°
H5C1MH6H7120.0°120.0°
H5C1MCPH858.8°60.0°
H5C1MCPH958.9°180.0°
H6C1MCPH861.2°180.0°
H6C1MCPH9178.9°60.0°
H7C1MCPH8178.8°60.0°
H7C1MCPH961.1°59.9°
H10O3XC3XH3055.3°57.2°
H11N4C3H3638.9°120.0°
H11N4C3H37157.4°119.9°
H12C6C7H1450.1°180.0°
H12C6C7H1568.3°59.9°
H13C6C7H14169.4°60.0°
H13C6C7H1551.0°180.0°
H14C7N8H1634.6°120.1°
H15C7N8H16153.0°120.0°
H17C13H18H19120.0°120.0°
H20C14H21H22120.0°120.0°
H26C4XC3XH3099.3°146.6°
H26C4XC5XH3142.9°172.7°
H26C4XC5XH3277.0°67.2°
H27C1XC2XH28160.6°146.4°
H28C2XO2XH2957.4°57.4°
H28C2XC3XH3036.2°0.1°
H34C10O10H3561.6°180.0°
H36C3C2H38152.4°60.0°
H36C3C2H3987.1°180.0°
H37C3C2H3833.9°180.0°
H37C3C2H39154.4°59.9°

223790

PDB entries from 2024-08-14

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