8HG
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O6 | C6 | doub | 1.22Å | 1.23Å | |
C6 | N1 | sing | 1.35Å | 1.41Å | |
C6 | C5 | sing | 1.40Å | 1.44Å | |
N1 | C2 | sing | 1.36Å | 1.42Å | |
N1 | HN1 | sing | 0.97Å | 1.00Å | |
C2 | N2 | sing | 1.37Å | 1.38Å | |
C2 | N3 | doub | 1.31Å | 1.32Å | |
N2 | HN21 | sing | 0.97Å | 1.00Å | |
N2 | HN22 | sing | 0.97Å | 1.00Å | |
N3 | C4 | sing | 1.34Å | 1.36Å | |
C4 | C5 | doub | 1.39Å | 1.36Å | |
C4 | N9 | sing | 1.38Å | 1.42Å | |
C5 | N7 | sing | 1.40Å | 1.43Å | |
N7 | C8 | sing | 1.35Å | 1.43Å | |
C8 | O20 | doub | 1.22Å | 1.23Å | |
C8 | N9 | sing | 1.35Å | 1.41Å | |
N9 | C1' | sing | 1.47Å | 1.46Å | |
C1' | O4' | sing | 1.44Å | 1.42Å | |
C1' | C2' | sing | 1.54Å | 1.51Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
O4' | C4' | sing | 1.44Å | 1.45Å | |
C2' | C3' | sing | 1.55Å | 1.53Å | |
C2' | H2'1 | sing | 1.09Å | 1.10Å | |
C2' | H2'2 | sing | 1.09Å | 1.10Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C4' | sing | 1.54Å | 1.54Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | H1 | sing | 0.97Å | 0.95Å | |
C4' | C5' | sing | 1.53Å | 1.55Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | O5' | sing | 1.43Å | 1.37Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
O5' | H5' | sing | 0.97Å | 0.95Å | |
N7 | H13 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O6 | C6 | N1 | 117.3° | 120.7° |
O6 | C6 | C5 | 129.1° | 120.8° |
N1 | C6 | C5 | 113.6° | 118.5° |
C6 | N1 | C2 | 123.1° | 120.2° |
C6 | N1 | HN1 | 118.5° | 119.9° |
C6 | C5 | C4 | 119.7° | 119.0° |
C6 | C5 | N7 | 130.7° | 134.0° |
C2 | N1 | HN1 | 118.5° | 119.9° |
N1 | C2 | N2 | 117.2° | 119.1° |
N1 | C2 | N3 | 120.4° | 121.7° |
N2 | C2 | N3 | 122.3° | 119.2° |
C2 | N2 | HN21 | 108.3° | 120.0° |
C2 | N2 | HN22 | 125.9° | 120.0° |
C2 | N3 | C4 | 118.2° | 121.1° |
HN21 | N2 | HN22 | 125.9° | 120.0° |
N3 | C4 | C5 | 124.9° | 119.6° |
N3 | C4 | N9 | 126.6° | 133.4° |
C5 | C4 | N9 | 108.5° | 107.0° |
C4 | C5 | N7 | 109.6° | 107.0° |
C4 | N9 | C8 | 108.1° | 108.8° |
C4 | N9 | C1' | 126.1° | 125.6° |
C5 | N7 | C8 | 106.5° | 107.8° |
C5 | N7 | H13 | 126.7° | 126.1° |
N7 | C8 | O20 | 127.1° | 125.2° |
N7 | C8 | N9 | 107.2° | 109.4° |
C8 | N7 | H13 | 126.8° | 126.1° |
O20 | C8 | N9 | 125.7° | 125.3° |
C8 | N9 | C1' | 125.6° | 125.6° |
N9 | C1' | O4' | 104.5° | 110.3° |
N9 | C1' | C2' | 119.2° | 110.4° |
N9 | C1' | H1' | 105.3° | 110.3° |
O4' | C1' | C2' | 105.7° | 104.8° |
O4' | C1' | H1' | 118.9° | 110.3° |
C1' | O4' | C4' | 111.4° | 105.2° |
C2' | C1' | H1' | 104.1° | 110.5° |
C1' | C2' | C3' | 103.1° | 104.0° |
C1' | C2' | H2'1 | 111.6° | 110.5° |
C1' | C2' | H2'2 | 113.0° | 110.5° |
O4' | C4' | C3' | 105.4° | 104.9° |
O4' | C4' | C5' | 115.4° | 110.4° |
O4' | C4' | H4' | 108.4° | 110.4° |
C3' | C2' | H2'1 | 111.7° | 110.5° |
C3' | C2' | H2'2 | 113.0° | 110.6° |
C2' | C3' | O3' | 113.5° | 110.5° |
C2' | C3' | C4' | 102.9° | 104.1° |
C2' | C3' | H3' | 111.4° | 110.5° |
H2'1 | C2' | H2'2 | 104.7° | 110.5° |
O3' | C3' | C4' | 109.9° | 110.6° |
O3' | C3' | H3' | 104.6° | 110.4° |
C3' | O3' | H1 | 109.5° | 114.1° |
C4' | C3' | H3' | 114.9° | 110.7° |
C3' | C4' | C5' | 109.7° | 110.4° |
C3' | C4' | H4' | 114.2° | 110.4° |
C5' | C4' | H4' | 104.1° | 110.4° |
C4' | C5' | O5' | 116.8° | 109.5° |
C4' | C5' | H5'1 | 107.1° | 109.5° |
C4' | C5' | H5'2 | 105.4° | 109.4° |
O5' | C5' | H5'1 | 107.1° | 109.5° |
O5' | C5' | H5'2 | 105.4° | 109.5° |
C5' | O5' | H5' | 109.5° | 114.0° |
H5'1 | C5' | H5'2 | 115.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O6 | C6 | N1 | C5 | 179.5° | 179.6° |
O6 | C6 | N1 | C2 | 177.8° | 179.9° |
O6 | C6 | N1 | HN1 | 2.2° | 0.1° |
O6 | C6 | C5 | C4 | 176.8° | 179.8° |
O6 | C6 | C5 | N7 | 1.4° | 0.1° |
C6 | N1 | C2 | HN1 | 180.0° | 179.9° |
C6 | N1 | C2 | N2 | 178.2° | 180.0° |
C6 | N1 | C2 | N3 | 0.4° | 0.0° |
N1 | C6 | C5 | C4 | 2.6° | 0.5° |
N1 | C6 | C5 | N7 | 179.3° | 179.7° |
C5 | C6 | N1 | C2 | 1.7° | 0.3° |
C5 | C6 | N1 | HN1 | 178.4° | 179.8° |
C6 | C5 | C4 | N3 | 2.4° | 0.5° |
C6 | C5 | C4 | N7 | 178.5° | 179.8° |
C6 | C5 | C4 | N9 | 178.9° | 179.7° |
C6 | C5 | N7 | C8 | 176.8° | 180.0° |
C6 | C5 | N7 | H13 | 3.2° | 0.0° |
N1 | C2 | N2 | N3 | 177.8° | 180.0° |
N1 | C2 | N2 | HN21 | 180.0° | 0.0° |
N1 | C2 | N2 | HN22 | 0.0° | 180.0° |
N1 | C2 | N3 | C4 | 0.1° | 0.1° |
HN1 | N1 | C2 | N2 | 1.8° | 0.1° |
HN1 | N1 | C2 | N3 | 179.7° | 179.9° |
C2 | N2 | HN21 | HN22 | 180.0° | 180.0° |
N2 | C2 | N3 | C4 | 177.6° | 179.9° |
N3 | C2 | N2 | HN21 | 2.2° | 180.0° |
N3 | C2 | N2 | HN22 | 177.8° | 0.0° |
C2 | N3 | C4 | C5 | 1.0° | 0.2° |
C2 | N3 | C4 | N9 | 179.5° | 180.0° |
N3 | C4 | C5 | N9 | 178.7° | 179.9° |
N3 | C4 | C5 | N7 | 179.1° | 179.7° |
N3 | C4 | N9 | C8 | 179.2° | 179.3° |
N3 | C4 | N9 | C1' | 3.0° | 0.1° |
C4 | C5 | N7 | C8 | 1.5° | 0.2° |
C5 | C4 | N9 | C8 | 2.1° | 0.5° |
C5 | C4 | N9 | C1' | 178.3° | 179.7° |
C4 | C5 | N7 | H13 | 178.5° | 179.8° |
N9 | C4 | C5 | N7 | 0.3° | 0.2° |
C4 | N9 | C8 | N7 | 3.0° | 0.6° |
C4 | N9 | C8 | O20 | 177.0° | 180.0° |
C4 | N9 | C8 | C1' | 176.2° | 179.2° |
C4 | N9 | C1' | O4' | 67.6° | 126.5° |
C4 | N9 | C1' | C2' | 50.1° | 118.1° |
C4 | N9 | C1' | H1' | 166.4° | 4.3° |
C5 | N7 | C8 | H13 | 180.0° | 180.0° |
C5 | N7 | C8 | O20 | 177.2° | 179.9° |
C5 | N7 | C8 | N9 | 2.7° | 0.5° |
N7 | C8 | O20 | N9 | 179.9° | 179.3° |
N7 | C8 | N9 | C1' | 179.2° | 179.9° |
O20 | C8 | N9 | C1' | 0.7° | 0.7° |
O20 | C8 | N7 | H13 | 2.8° | 0.1° |
C8 | N9 | C1' | O4' | 108.0° | 54.4° |
C8 | N9 | C1' | C2' | 134.3° | 61.0° |
C8 | N9 | C1' | H1' | 18.1° | 176.6° |
N9 | C8 | N7 | H13 | 177.3° | 179.5° |
N9 | C1' | O4' | C2' | 126.6° | 118.8° |
N9 | C1' | O4' | H1' | 117.0° | 122.2° |
N9 | C1' | C2' | H1' | 116.9° | 122.4° |
N9 | C1' | O4' | C4' | 147.0° | 159.4° |
N9 | C1' | C2' | C3' | 149.6° | 142.8° |
N9 | C1' | C2' | H2'1 | 90.3° | 98.6° |
N9 | C1' | C2' | H2'2 | 27.3° | 24.1° |
O4' | C1' | C2' | H1' | 126.0° | 118.9° |
O4' | C1' | C2' | C3' | 32.6° | 24.0° |
O4' | C1' | C2' | H2'1 | 152.6° | 142.6° |
O4' | C1' | C2' | H2'2 | 89.7° | 94.7° |
C1' | O4' | C4' | C3' | 0.5° | 40.5° |
C1' | O4' | C4' | C5' | 120.6° | 159.4° |
C1' | O4' | C4' | H4' | 123.2° | 78.4° |
C2' | C1' | O4' | C4' | 20.4° | 40.5° |
C1' | C2' | C3' | H2'1 | 120.0° | 118.6° |
C1' | C2' | C3' | H2'2 | 122.3° | 118.7° |
C1' | C2' | H2'1 | H2'2 | 122.6° | 122.7° |
C1' | C2' | C3' | O3' | 86.7° | 118.7° |
C1' | C2' | C3' | C4' | 32.0° | 0.1° |
C1' | C2' | C3' | H3' | 155.6° | 118.9° |
H1' | C1' | O4' | C4' | 96.0° | 78.5° |
H1' | C1' | C2' | C3' | 93.5° | 94.8° |
H1' | C1' | C2' | H2'1 | 26.6° | 23.8° |
H1' | C1' | C2' | H2'2 | 144.2° | 146.5° |
O4' | C4' | C3' | C2' | 20.6° | 24.0° |
O4' | C4' | C3' | O3' | 100.6° | 142.7° |
O4' | C4' | C3' | C5' | 124.8° | 118.9° |
O4' | C4' | C3' | H4' | 118.9° | 118.9° |
O4' | C4' | C3' | H3' | 141.8° | 94.7° |
O4' | C4' | C5' | H4' | 118.6° | 122.3° |
O4' | C4' | C5' | O5' | 67.9° | 66.4° |
O4' | C4' | C5' | H5'1 | 52.1° | 173.6° |
O4' | C4' | C5' | H5'2 | 175.5° | 53.6° |
C3' | C2' | H2'1 | H2'2 | 122.6° | 122.7° |
C2' | C3' | O3' | C4' | 114.6° | 114.7° |
C2' | C3' | O3' | H3' | 121.6° | 122.5° |
C2' | C3' | C4' | H3' | 121.2° | 118.7° |
C2' | C3' | O3' | H1 | 98.1° | 61.4° |
C2' | C3' | C4' | C5' | 104.2° | 142.8° |
C2' | C3' | C4' | H4' | 139.4° | 94.9° |
H2'1 | C2' | C3' | O3' | 33.3° | 0.1° |
H2'1 | C2' | C3' | C4' | 152.0° | 118.7° |
H2'1 | C2' | C3' | H3' | 84.4° | 122.5° |
H2'2 | C2' | C3' | O3' | 151.0° | 122.6° |
H2'2 | C2' | C3' | C4' | 90.3° | 118.6° |
H2'2 | C2' | C3' | H3' | 33.3° | 0.2° |
O3' | C3' | C4' | H3' | 117.6° | 122.6° |
O3' | C3' | C4' | C5' | 134.6° | 98.5° |
O3' | C3' | C4' | H4' | 18.3° | 23.8° |
C4' | C3' | O3' | H1 | 16.5° | 176.1° |
C3' | C4' | C5' | H4' | 122.6° | 122.3° |
C3' | C4' | C5' | O5' | 50.9° | 178.2° |
C3' | C4' | C5' | H5'1 | 170.9° | 58.1° |
C3' | C4' | C5' | H5'2 | 65.7° | 61.9° |
H3' | C3' | O3' | H1 | 140.3° | 61.1° |
H3' | C3' | C4' | C5' | 17.0° | 24.2° |
H3' | C3' | C4' | H4' | 99.3° | 146.4° |
C4' | C5' | O5' | H5'1 | 120.0° | 120.0° |
C4' | C5' | O5' | H5'2 | 116.6° | 119.9° |
C4' | C5' | H5'1 | H5'2 | 117.0° | 119.9° |
C4' | C5' | O5' | H5' | 54.3° | 180.0° |
H4' | C4' | C5' | O5' | 173.5° | 55.9° |
H4' | C4' | C5' | H5'1 | 66.5° | 64.2° |
H4' | C4' | C5' | H5'2 | 56.9° | 175.9° |
O5' | C5' | H5'1 | H5'2 | 117.0° | 120.0° |
H5'1 | C5' | O5' | H5' | 174.3° | 59.9° |
H5'2 | C5' | O5' | H5' | 62.4° | 60.1° |