8GM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| OP1 | P | doub | 1.48Å | 1.51Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.55Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| O5' | P | sing | 1.61Å | 1.65Å | |
| P | OP3 | sing | 1.61Å | 1.54Å | |
| P | OP2 | sing | 1.61Å | 1.55Å | |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| O4' | C1' | sing | 1.44Å | 1.45Å | |
| C1' | N9 | sing | 1.47Å | 1.48Å | |
| N9 | C4 | sing | 1.38Å | 1.33Å | |
| N9 | C8 | sing | 1.35Å | 1.33Å | |
| O8 | C8 | doub | 1.22Å | 1.30Å | |
| N3 | C4 | sing | 1.34Å | 1.37Å | |
| N3 | C2 | doub | 1.32Å | 1.33Å | |
| C4 | C5 | doub | 1.39Å | 1.49Å | |
| C8 | N7 | sing | 1.35Å | 1.36Å | |
| N2 | C2 | sing | 1.37Å | 1.35Å | |
| C2 | N1 | sing | 1.36Å | 1.36Å | |
| N7 | C5 | sing | 1.40Å | 1.35Å | |
| C5 | C6 | sing | 1.40Å | 1.48Å | |
| N1 | C6 | sing | 1.35Å | 1.35Å | |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| OP3 | H1 | sing | 0.97Å | 0.95Å | |
| OP2 | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| O2' | H9 | sing | 0.97Å | 0.95Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| N2 | H11 | sing | 0.97Å | 1.00Å | |
| N2 | H12 | sing | 0.97Å | 1.00Å | |
| N1 | H13 | sing | 0.97Å | 1.00Å | |
| N7 | H14 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 107.9° | 110.5° |
| O3' | C3' | C2' | 106.0° | 110.5° |
| O3' | C3' | H6 | 113.4° | 110.5° |
| C3' | O3' | H7 | 109.5° | 114.0° |
| OP1 | P | O5' | 102.7° | 109.5° |
| OP1 | P | OP3 | 112.8° | 109.4° |
| OP1 | P | OP2 | 113.2° | 109.5° |
| C4' | C3' | C2' | 105.1° | 104.2° |
| C3' | C4' | C5' | 109.8° | 109.9° |
| C3' | C4' | O4' | 103.6° | 107.3° |
| C3' | C4' | H5 | 108.6° | 110.1° |
| C4' | C3' | H6 | 111.8° | 110.5° |
| C3' | C2' | O2' | 114.4° | 110.9° |
| C3' | C2' | C1' | 100.0° | 102.1° |
| C2' | C3' | H6 | 112.0° | 110.5° |
| C3' | C2' | H8 | 110.3° | 110.9° |
| C5' | C4' | O4' | 117.0° | 109.9° |
| C4' | C5' | O5' | 116.5° | 109.5° |
| C4' | C5' | H3 | 107.7° | 109.5° |
| C4' | C5' | H4 | 107.7° | 109.4° |
| C5' | C4' | H5 | 108.2° | 109.8° |
| C4' | O4' | C1' | 109.9° | 107.0° |
| O4' | C4' | H5 | 109.4° | 109.9° |
| C5' | O5' | P | 122.6° | 123.0° |
| O5' | C5' | H3 | 107.7° | 109.5° |
| O5' | C5' | H4 | 107.7° | 109.5° |
| O5' | P | OP3 | 102.1° | 109.5° |
| O5' | P | OP2 | 110.5° | 109.5° |
| OP3 | P | OP2 | 114.2° | 109.5° |
| P | OP3 | H1 | 109.5° | 114.0° |
| P | OP2 | H2 | 109.5° | 114.0° |
| O2' | C2' | C1' | 109.5° | 111.0° |
| O2' | C2' | H8 | 111.9° | 110.8° |
| C2' | O2' | H9 | 109.5° | 114.0° |
| C2' | C1' | O4' | 106.1° | 103.5° |
| C2' | C1' | N9 | 114.7° | 110.6° |
| C1' | C2' | H8 | 110.1° | 110.9° |
| C2' | C1' | H10 | 108.8° | 110.6° |
| O4' | C1' | N9 | 108.0° | 110.6° |
| O4' | C1' | H10 | 109.7° | 110.6° |
| C1' | N9 | C4 | 125.4° | 125.6° |
| C1' | N9 | C8 | 128.2° | 125.6° |
| N9 | C1' | H10 | 109.4° | 110.6° |
| C4 | N9 | C8 | 106.2° | 108.8° |
| N9 | C4 | N3 | 132.2° | 133.5° |
| N9 | C4 | C5 | 105.4° | 107.0° |
| N9 | C8 | O8 | 122.3° | 125.2° |
| N9 | C8 | N7 | 117.2° | 109.4° |
| O8 | C8 | N7 | 120.6° | 125.3° |
| C4 | N3 | C2 | 118.3° | 121.1° |
| N3 | C4 | C5 | 122.3° | 119.6° |
| N3 | C2 | N2 | 117.9° | 119.2° |
| N3 | C2 | N1 | 121.7° | 121.7° |
| C4 | C5 | N7 | 109.8° | 106.9° |
| C4 | C5 | C6 | 115.6° | 119.0° |
| C8 | N7 | C5 | 101.4° | 107.9° |
| C8 | N7 | H14 | 129.3° | 126.0° |
| N2 | C2 | N1 | 120.4° | 119.1° |
| C2 | N2 | H11 | 120.0° | 120.0° |
| C2 | N2 | H12 | 120.0° | 120.1° |
| C2 | N1 | C6 | 126.5° | 120.1° |
| C2 | N1 | H13 | 116.7° | 119.9° |
| N7 | C5 | C6 | 134.6° | 134.0° |
| C5 | N7 | H14 | 129.3° | 126.0° |
| C5 | C6 | N1 | 115.5° | 118.5° |
| C5 | C6 | O6 | 122.5° | 120.7° |
| N1 | C6 | O6 | 122.0° | 120.8° |
| C6 | N1 | H13 | 116.7° | 119.9° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| H11 | N2 | H12 | 120.1° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | C2' | 112.8° | 118.6° |
| O3' | C3' | C4' | H6 | 125.4° | 122.6° |
| O3' | C3' | C2' | H6 | 124.2° | 122.6° |
| O3' | C3' | C4' | C5' | 150.4° | 119.9° |
| O3' | C3' | C4' | O4' | 83.9° | 120.7° |
| O3' | C3' | C2' | O2' | 41.2° | 20.4° |
| O3' | C3' | C2' | C1' | 75.7° | 97.8° |
| O3' | C3' | C4' | H5 | 32.3° | 1.2° |
| O3' | C3' | C2' | H8 | 168.4° | 144.0° |
| OP1 | P | O5' | C5' | 70.8° | 55.0° |
| OP1 | P | O5' | OP3 | 117.1° | 120.0° |
| OP1 | P | O5' | OP2 | 121.1° | 120.0° |
| OP1 | P | OP3 | OP2 | 131.2° | 120.0° |
| OP1 | P | OP3 | H1 | 0.0° | 60.0° |
| OP1 | P | OP2 | H2 | 0.0° | 180.0° |
| C4' | C3' | C2' | H6 | 121.7° | 118.8° |
| C3' | C4' | C5' | O4' | 117.6° | 117.8° |
| C3' | C4' | C5' | H5 | 118.4° | 121.2° |
| C3' | C4' | O4' | H5 | 115.6° | 119.6° |
| C3' | C4' | C5' | O5' | 167.7° | 175.7° |
| C4' | C3' | C2' | O2' | 155.3° | 139.1° |
| C4' | C3' | C2' | C1' | 38.5° | 20.8° |
| C3' | C4' | O4' | C1' | 6.7° | 26.5° |
| C3' | C4' | C5' | H3 | 71.3° | 64.2° |
| C3' | C4' | C5' | H4 | 46.7° | 55.7° |
| C4' | C3' | O3' | H7 | 180.0° | 180.0° |
| C4' | C3' | C2' | H8 | 77.5° | 97.3° |
| C2' | C3' | C4' | C5' | 96.8° | 121.5° |
| C2' | C3' | C4' | O4' | 28.9° | 2.1° |
| C3' | C2' | O2' | C1' | 111.2° | 112.7° |
| C3' | C2' | O2' | H8 | 126.4° | 123.6° |
| C3' | C2' | C1' | H8 | 116.1° | 118.1° |
| C3' | C2' | C1' | O4' | 34.4° | 37.0° |
| C3' | C2' | C1' | N9 | 153.6° | 155.5° |
| C2' | C3' | C4' | H5 | 145.1° | 117.5° |
| C2' | C3' | O3' | H7 | 67.7° | 65.2° |
| C3' | C2' | O2' | H9 | 180.0° | 61.4° |
| C3' | C2' | C1' | H10 | 83.6° | 81.5° |
| C5' | C4' | O4' | H5 | 123.4° | 121.0° |
| C4' | C5' | O5' | H3 | 121.0° | 120.0° |
| C4' | C5' | O5' | H4 | 121.0° | 120.0° |
| C4' | C5' | O5' | P | 178.3° | 180.0° |
| C5' | C4' | O4' | C1' | 114.2° | 145.9° |
| C4' | C5' | H3 | H4 | 116.8° | 119.9° |
| C5' | C4' | C3' | H6 | 25.1° | 2.7° |
| O4' | C4' | C5' | O5' | 50.1° | 66.5° |
| C4' | O4' | C1' | C2' | 17.8° | 40.1° |
| C4' | O4' | C1' | N9 | 141.3° | 158.6° |
| O4' | C4' | C5' | H3 | 171.1° | 53.6° |
| O4' | C4' | C5' | H4 | 70.9° | 173.5° |
| O4' | C4' | C3' | H6 | 150.7° | 116.7° |
| C4' | O4' | C1' | H10 | 99.5° | 78.5° |
| C5' | O5' | P | OP3 | 172.2° | 175.0° |
| C5' | O5' | P | OP2 | 50.3° | 65.0° |
| O5' | C5' | H3 | H4 | 116.8° | 120.0° |
| O5' | C5' | C4' | H5 | 73.9° | 54.5° |
| O5' | P | OP3 | OP2 | 119.3° | 120.0° |
| O5' | P | OP3 | H1 | 109.5° | 180.0° |
| O5' | P | OP2 | H2 | 114.6° | 60.0° |
| P | O5' | C5' | H3 | 60.6° | 60.0° |
| P | O5' | C5' | H4 | 57.3° | 60.0° |
| OP3 | P | OP2 | H2 | 131.0° | 60.0° |
| OP2 | P | OP3 | H1 | 131.2° | 60.0° |
| O2' | C2' | C1' | H8 | 123.4° | 123.6° |
| O2' | C2' | C1' | O4' | 154.9° | 155.2° |
| O2' | C2' | C1' | N9 | 85.9° | 86.3° |
| O2' | C2' | C3' | H6 | 83.0° | 102.2° |
| O2' | C2' | C1' | H10 | 36.9° | 36.7° |
| C2' | C1' | O4' | N9 | 123.5° | 118.5° |
| C2' | C1' | O4' | H10 | 117.4° | 118.5° |
| C2' | C1' | N9 | H10 | 122.5° | 122.9° |
| C2' | C1' | N9 | C4 | 65.9° | 119.5° |
| C2' | C1' | N9 | C8 | 120.6° | 60.3° |
| C1' | C2' | C3' | H6 | 160.2° | 139.6° |
| C1' | C2' | O2' | H9 | 68.8° | 174.1° |
| O4' | C1' | N9 | H10 | 119.4° | 122.9° |
| O4' | C1' | N9 | C4 | 52.3° | 126.4° |
| O4' | C1' | N9 | C8 | 121.3° | 53.8° |
| C1' | O4' | C4' | H5 | 122.3° | 93.1° |
| O4' | C1' | C2' | H8 | 81.7° | 81.1° |
| C1' | N9 | C4 | C8 | 174.7° | 179.8° |
| C1' | N9 | C8 | O8 | 4.3° | 0.0° |
| C1' | N9 | C4 | N3 | 8.0° | 0.0° |
| C1' | N9 | C4 | C5 | 176.6° | 180.0° |
| C1' | N9 | C8 | N7 | 176.2° | 180.0° |
| N9 | C1' | C2' | H8 | 37.5° | 37.4° |
| C4 | N9 | C8 | O8 | 178.8° | 179.7° |
| N9 | C4 | N3 | C5 | 174.8° | 179.9° |
| N9 | C4 | N3 | C2 | 179.1° | 180.0° |
| C4 | N9 | C8 | N7 | 1.7° | 0.2° |
| N9 | C4 | C5 | N7 | 1.6° | 0.1° |
| N9 | C4 | C5 | C6 | 179.9° | 180.0° |
| C4 | N9 | C1' | H10 | 171.6° | 3.5° |
| N9 | C8 | O8 | N7 | 179.5° | 180.0° |
| C8 | N9 | C4 | N3 | 177.3° | 179.7° |
| C8 | N9 | C4 | C5 | 1.9° | 0.2° |
| N9 | C8 | N7 | C5 | 0.6° | 0.2° |
| C8 | N9 | C1' | H10 | 2.0° | 176.8° |
| N9 | C8 | N7 | H14 | 179.3° | 179.9° |
| O8 | C8 | N7 | C5 | 179.9° | 179.8° |
| O8 | C8 | N7 | H14 | 0.2° | 0.0° |
| C4 | N3 | C2 | N2 | 178.5° | 179.9° |
| C4 | N3 | C2 | N1 | 1.6° | 0.0° |
| N3 | C4 | C5 | N7 | 177.6° | 179.9° |
| N3 | C4 | C5 | C6 | 3.9° | 0.1° |
| C2 | N3 | C4 | C5 | 4.3° | 0.0° |
| N3 | C2 | N2 | N1 | 179.9° | 179.9° |
| N3 | C2 | N1 | C6 | 1.7° | 0.1° |
| N3 | C2 | N2 | H11 | 0.0° | 0.1° |
| N3 | C2 | N2 | H12 | 180.0° | 180.0° |
| N3 | C2 | N1 | H13 | 178.4° | 180.0° |
| C4 | C5 | N7 | C8 | 0.6° | 0.1° |
| C4 | C5 | N7 | C6 | 178.0° | 179.9° |
| C4 | C5 | C6 | N1 | 0.8° | 0.0° |
| C4 | C5 | C6 | O6 | 178.5° | 179.9° |
| C4 | C5 | N7 | H14 | 179.4° | 179.8° |
| C8 | N7 | C5 | H14 | 180.0° | 179.7° |
| C8 | N7 | C5 | C6 | 178.6° | 179.8° |
| N2 | C2 | N1 | C6 | 178.2° | 180.0° |
| C2 | N2 | H11 | H12 | 180.0° | 179.9° |
| N2 | C2 | N1 | H13 | 1.8° | 0.1° |
| C2 | N1 | C6 | C5 | 1.9° | 0.0° |
| C2 | N1 | C6 | H13 | 180.0° | 180.0° |
| C2 | N1 | C6 | O6 | 175.8° | 179.9° |
| N1 | C2 | N2 | H11 | 179.9° | 180.0° |
| N1 | C2 | N2 | H12 | 0.1° | 0.1° |
| N7 | C5 | C6 | N1 | 178.8° | 179.9° |
| N7 | C5 | C6 | O6 | 3.5° | 0.2° |
| C5 | C6 | N1 | O6 | 177.7° | 179.9° |
| C5 | C6 | N1 | H13 | 178.1° | 180.0° |
| C6 | C5 | N7 | H14 | 1.4° | 0.1° |
| O6 | C6 | N1 | H13 | 4.2° | 0.1° |
| H3 | C5' | C4' | H5 | 47.1° | 174.6° |
| H4 | C5' | C4' | H5 | 165.1° | 65.5° |
| H5 | C4' | C3' | H6 | 93.1° | 123.8° |
| H6 | C3' | O3' | H7 | 55.6° | 57.4° |
| H6 | C3' | C2' | H8 | 44.2° | 21.4° |
| H8 | C2' | O2' | H9 | 53.6° | 62.2° |
| H8 | C2' | C1' | H10 | 160.4° | 160.3° |
