8GD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C2 | sing | 1.36Å | 1.38Å | |
| N1 | C6 | sing | 1.35Å | 1.39Å | |
| C2 | N2 | sing | 1.37Å | 1.34Å | |
| C2 | N3 | doub | 1.32Å | 1.32Å | |
| N3 | C4 | sing | 1.34Å | 1.36Å | |
| C4 | C5 | doub | 1.39Å | 1.37Å | |
| C4 | N9 | sing | 1.38Å | 1.37Å | |
| C5 | C6 | sing | 1.40Å | 1.41Å | |
| C5 | N7 | sing | 1.40Å | 1.38Å | |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| N7 | C8 | sing | 1.35Å | 1.31Å | |
| C8 | O8 | doub | 1.22Å | 1.23Å | |
| C8 | N9 | sing | 1.35Å | 1.38Å | |
| N9 | C1' | sing | 1.46Å | 1.47Å | |
| PA | O1A | doub | 1.48Å | 1.49Å | |
| PA | O2A | sing | 1.61Å | 1.50Å | |
| PA | O3A | sing | 1.61Å | 1.64Å | |
| PA | O5' | sing | 1.61Å | 1.60Å | |
| PB | O1B | sing | 1.61Å | 1.47Å | |
| PB | O2B | doub | 1.48Å | 1.45Å | |
| PB | O3A | sing | 1.61Å | 1.59Å | |
| PB | O3B | sing | 1.61Å | 1.59Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.55Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| N2 | HN2A | sing | 0.97Å | 1.00Å | |
| N7 | HN7 | sing | 0.97Å | 1.00Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O1B | HO1B | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| O2A | HO2A | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O3B | HO3B | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | N1 | C6 | 125.1° | 120.1° |
| N1 | C2 | N2 | 117.0° | 119.1° |
| N1 | C2 | N3 | 123.5° | 121.7° |
| C2 | N1 | HN1 | 117.4° | 119.9° |
| N1 | C6 | C5 | 111.9° | 118.5° |
| N1 | C6 | O6 | 120.2° | 120.8° |
| C6 | N1 | HN1 | 117.5° | 120.0° |
| N2 | C2 | N3 | 119.5° | 119.1° |
| C2 | N2 | HN2 | 120.0° | 120.0° |
| C2 | N2 | HN2A | 120.0° | 120.0° |
| C2 | N3 | C4 | 111.9° | 121.1° |
| N3 | C4 | C5 | 128.8° | 119.6° |
| N3 | C4 | N9 | 125.7° | 133.5° |
| C5 | C4 | N9 | 105.5° | 106.9° |
| C4 | C5 | C6 | 118.8° | 119.0° |
| C4 | C5 | N7 | 110.7° | 107.0° |
| C4 | N9 | C8 | 106.8° | 108.8° |
| C4 | N9 | C1' | 123.1° | 125.6° |
| C6 | C5 | N7 | 130.5° | 134.0° |
| C5 | C6 | O6 | 127.9° | 120.8° |
| C5 | N7 | C8 | 105.1° | 107.9° |
| C5 | N7 | HN7 | 127.4° | 126.1° |
| N7 | C8 | O8 | 121.6° | 125.3° |
| N7 | C8 | N9 | 112.0° | 109.5° |
| C8 | N7 | HN7 | 127.4° | 126.1° |
| O8 | C8 | N9 | 126.4° | 125.3° |
| C8 | N9 | C1' | 130.2° | 125.6° |
| N9 | C1' | C2' | 113.9° | 109.9° |
| N9 | C1' | O4' | 107.3° | 109.9° |
| N9 | C1' | H1' | 107.0° | 109.9° |
| O1A | PA | O2A | 118.7° | 109.4° |
| O1A | PA | O3A | 107.4° | 109.5° |
| O1A | PA | O5' | 112.3° | 109.4° |
| O2A | PA | O3A | 110.8° | 109.5° |
| O2A | PA | O5' | 110.5° | 109.5° |
| PA | O2A | HO2A | 109.5° | 114.0° |
| O3A | PA | O5' | 94.3° | 109.5° |
| PA | O3A | PB | 132.3° | 134.0° |
| PA | O5' | C5' | 120.4° | 123.0° |
| O1B | PB | O2B | 119.7° | 109.5° |
| O1B | PB | O3A | 105.5° | 109.4° |
| O1B | PB | O3B | 107.8° | 109.5° |
| PB | O1B | HO1B | 109.5° | 114.0° |
| O2B | PB | O3A | 111.4° | 109.5° |
| O2B | PB | O3B | 107.6° | 109.5° |
| O3A | PB | O3B | 103.6° | 109.5° |
| PB | O3B | HO3B | 109.5° | 114.0° |
| C2' | C1' | O4' | 106.1° | 107.3° |
| C1' | C2' | C3' | 101.6° | 104.2° |
| C2' | C1' | H1' | 108.1° | 109.9° |
| C1' | C2' | H2' | 112.2° | 110.4° |
| C1' | C2' | H2'A | 112.2° | 110.5° |
| C1' | O4' | C4' | 110.4° | 107.0° |
| O4' | C1' | H1' | 114.7° | 109.9° |
| C2' | C3' | O3' | 109.3° | 110.9° |
| C2' | C3' | C4' | 103.7° | 102.1° |
| C3' | C2' | H2' | 112.2° | 110.5° |
| C3' | C2' | H2'A | 112.2° | 110.6° |
| C2' | C3' | H3' | 112.9° | 110.9° |
| O3' | C3' | C4' | 108.4° | 110.9° |
| O3' | C3' | H3' | 108.5° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | O4' | 105.2° | 103.5° |
| C3' | C4' | C5' | 115.7° | 110.6° |
| C4' | C3' | H3' | 113.7° | 111.0° |
| C3' | C4' | H4' | 109.2° | 110.7° |
| O4' | C4' | C5' | 112.1° | 110.6° |
| O4' | C4' | H4' | 113.0° | 110.6° |
| C4' | C5' | O5' | 109.6° | 109.4° |
| C5' | C4' | H4' | 101.8° | 110.7° |
| C4' | C5' | H5' | 109.4° | 109.5° |
| C4' | C5' | H5'A | 109.4° | 109.4° |
| O5' | C5' | H5' | 109.4° | 109.5° |
| O5' | C5' | H5'A | 109.4° | 109.5° |
| HN2 | N2 | HN2A | 120.0° | 120.0° |
| H2' | C2' | H2'A | 106.6° | 110.6° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | N1 | C6 | HN1 | 180.0° | 179.7° |
| N1 | C2 | N2 | N3 | 179.9° | 180.0° |
| N1 | C2 | N3 | C4 | 0.2° | 0.1° |
| C2 | N1 | C6 | C5 | 0.3° | 0.0° |
| C2 | N1 | C6 | O6 | 179.8° | 179.9° |
| N1 | C2 | N2 | HN2 | 179.8° | 0.0° |
| N1 | C2 | N2 | HN2A | 0.1° | 179.9° |
| C6 | N1 | C2 | N2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.4° | 0.0° |
| N1 | C6 | C5 | C4 | 0.0° | 0.0° |
| N1 | C6 | C5 | O6 | 179.9° | 179.9° |
| N1 | C6 | C5 | N7 | 180.0° | 180.0° |
| N2 | C2 | N3 | C4 | 179.9° | 180.0° |
| N2 | C2 | N1 | HN1 | 0.3° | 0.3° |
| C2 | N2 | HN2 | HN2A | 180.0° | 179.9° |
| C2 | N3 | C4 | C5 | 0.1° | 0.1° |
| C2 | N3 | C4 | N9 | 179.8° | 180.0° |
| N3 | C2 | N1 | HN1 | 179.6° | 179.7° |
| N3 | C2 | N2 | HN2 | 0.0° | 180.0° |
| N3 | C2 | N2 | HN2A | 180.0° | 0.0° |
| N3 | C4 | C5 | N9 | 179.8° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.0° |
| N3 | C4 | C5 | N7 | 179.8° | 180.0° |
| N3 | C4 | N9 | C8 | 179.8° | 180.0° |
| N3 | C4 | N9 | C1' | 0.3° | 0.0° |
| C4 | C5 | C6 | N7 | 180.0° | 180.0° |
| C4 | C5 | C6 | O6 | 179.9° | 179.9° |
| C4 | C5 | N7 | C8 | 0.0° | 0.0° |
| C5 | C4 | N9 | C8 | 0.0° | 0.0° |
| C5 | C4 | N9 | C1' | 179.5° | 180.0° |
| C4 | C5 | N7 | HN7 | 180.0° | 179.9° |
| N9 | C4 | C5 | C6 | 180.0° | 180.0° |
| N9 | C4 | C5 | N7 | 0.0° | 0.0° |
| C4 | N9 | C8 | N7 | 0.0° | 0.0° |
| C4 | N9 | C8 | O8 | 180.0° | 180.0° |
| C4 | N9 | C8 | C1' | 179.5° | 180.0° |
| C4 | N9 | C1' | C2' | 149.3° | 115.0° |
| C4 | N9 | C1' | O4' | 32.2° | 127.2° |
| C4 | N9 | C1' | H1' | 91.3° | 6.1° |
| C6 | C5 | N7 | C8 | 180.0° | 180.0° |
| C5 | C6 | N1 | HN1 | 179.7° | 179.7° |
| C6 | C5 | N7 | HN7 | 0.0° | 0.0° |
| N7 | C5 | C6 | O6 | 0.1° | 0.1° |
| C5 | N7 | C8 | HN7 | 180.0° | 180.0° |
| C5 | N7 | C8 | O8 | 180.0° | 180.0° |
| C5 | N7 | C8 | N9 | 0.0° | 0.0° |
| O6 | C6 | N1 | HN1 | 0.2° | 0.2° |
| N7 | C8 | O8 | N9 | 180.0° | 180.0° |
| N7 | C8 | N9 | C1' | 179.5° | 180.0° |
| O8 | C8 | N9 | C1' | 0.5° | 0.0° |
| O8 | C8 | N7 | HN7 | 0.1° | 0.0° |
| C8 | N9 | C1' | C2' | 30.1° | 65.0° |
| C8 | N9 | C1' | O4' | 147.2° | 52.9° |
| N9 | C8 | N7 | HN7 | 180.0° | 180.0° |
| C8 | N9 | C1' | H1' | 89.3° | 174.0° |
| N9 | C1' | C2' | O4' | 117.8° | 119.4° |
| N9 | C1' | C2' | H1' | 118.7° | 121.1° |
| N9 | C1' | O4' | H1' | 118.6° | 121.1° |
| N9 | C1' | C2' | C3' | 151.1° | 121.5° |
| N9 | C1' | O4' | C4' | 141.0° | 145.9° |
| N9 | C1' | C2' | H2' | 88.8° | 119.9° |
| N9 | C1' | C2' | H2'A | 31.1° | 2.7° |
| O1A | PA | O2A | O3A | 125.0° | 120.0° |
| O1A | PA | O2A | O5' | 131.8° | 120.0° |
| O1A | PA | O3A | O5' | 115.0° | 120.0° |
| O1A | PA | O3A | PB | 97.8° | 40.0° |
| O1A | PA | O5' | C5' | 169.6° | 55.0° |
| O1A | PA | O2A | HO2A | 0.0° | 180.0° |
| O2A | PA | O3A | O5' | 113.9° | 120.0° |
| O2A | PA | O3A | PB | 33.4° | 80.0° |
| O2A | PA | O5' | C5' | 34.6° | 64.9° |
| PA | O3A | PB | O1B | 45.5° | 75.0° |
| PA | O3A | PB | O2B | 85.9° | 45.0° |
| PA | O3A | PB | O3B | 158.7° | 165.0° |
| O3A | PA | O5' | C5' | 79.5° | 175.0° |
| O3A | PA | O2A | HO2A | 125.0° | 60.0° |
| O5' | PA | O3A | PB | 147.2° | 160.0° |
| PA | O5' | C5' | C4' | 105.2° | 180.0° |
| O5' | PA | O2A | HO2A | 131.8° | 60.0° |
| PA | O5' | C5' | H5' | 14.8° | 60.0° |
| PA | O5' | C5' | H5'A | 134.8° | 60.1° |
| O1B | PB | O2B | O3A | 123.7° | 120.0° |
| O1B | PB | O2B | O3B | 123.4° | 120.0° |
| O1B | PB | O3A | O3B | 113.2° | 120.0° |
| O1B | PB | O3B | HO3B | 130.4° | 60.0° |
| O2B | PB | O3A | O3B | 115.4° | 120.0° |
| O2B | PB | O1B | HO1B | 0.0° | 180.0° |
| O2B | PB | O3B | HO3B | 0.0° | 60.0° |
| O3A | PB | O1B | HO1B | 126.5° | 60.0° |
| O3A | PB | O3B | HO3B | 118.1° | 180.0° |
| O3B | PB | O1B | HO1B | 123.3° | 60.0° |
| C2' | C1' | O4' | H1' | 119.3° | 119.5° |
| C1' | C2' | C3' | H2' | 120.0° | 118.6° |
| C1' | C2' | C3' | H2'A | 120.0° | 118.7° |
| C1' | C2' | C3' | O3' | 80.6° | 139.1° |
| C1' | C2' | C3' | C4' | 34.8° | 20.9° |
| C2' | C1' | O4' | C4' | 18.9° | 26.5° |
| C1' | C2' | H2' | H2'A | 123.2° | 122.6° |
| C1' | C2' | C3' | H3' | 158.4° | 97.4° |
| O4' | C1' | C2' | C3' | 33.4° | 2.0° |
| C1' | O4' | C4' | C3' | 3.7° | 40.0° |
| C1' | O4' | C4' | C5' | 122.8° | 158.5° |
| O4' | C1' | C2' | H2' | 153.4° | 120.7° |
| O4' | C1' | C2' | H2'A | 86.7° | 116.7° |
| C1' | O4' | C4' | H4' | 122.8° | 78.5° |
| C2' | C3' | O3' | C4' | 112.5° | 112.7° |
| C2' | C3' | O3' | H3' | 123.5° | 123.5° |
| C2' | C3' | C4' | H3' | 123.0° | 118.2° |
| C2' | C3' | C4' | O4' | 24.6° | 37.0° |
| C2' | C3' | C4' | C5' | 99.7° | 155.5° |
| C3' | C2' | C1' | H1' | 90.1° | 117.5° |
| C3' | C2' | H2' | H2'A | 123.2° | 122.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | H4' | 146.2° | 81.5° |
| O3' | C3' | C4' | H3' | 120.8° | 123.6° |
| O3' | C3' | C4' | O4' | 91.6° | 155.2° |
| O3' | C3' | C4' | C5' | 144.2° | 86.3° |
| O3' | C3' | C2' | H2' | 39.4° | 20.5° |
| O3' | C3' | C2' | H2'A | 159.4° | 102.2° |
| O3' | C3' | C4' | H4' | 30.0° | 36.7° |
| C3' | C4' | O4' | C5' | 126.5° | 118.5° |
| C3' | C4' | O4' | H4' | 119.1° | 118.5° |
| C3' | C4' | C5' | H4' | 118.3° | 123.0° |
| C3' | C4' | C5' | O5' | 87.0° | 175.0° |
| C4' | C3' | C2' | H2' | 154.9° | 97.7° |
| C4' | C3' | C2' | H2'A | 85.1° | 139.5° |
| C4' | C3' | O3' | HO3' | 67.5° | 174.1° |
| C3' | C4' | C5' | H5' | 33.0° | 55.0° |
| C3' | C4' | C5' | H5'A | 153.0° | 65.0° |
| O4' | C4' | C5' | H4' | 121.1° | 122.9° |
| O4' | C4' | C5' | O5' | 152.4° | 70.9° |
| C4' | O4' | C1' | H1' | 100.3° | 93.0° |
| O4' | C4' | C3' | H3' | 147.6° | 81.2° |
| O4' | C4' | C5' | H5' | 87.6° | 169.1° |
| O4' | C4' | C5' | H5'A | 32.4° | 49.1° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C5' | C4' | C3' | H3' | 23.3° | 37.3° |
| C4' | C5' | H5' | H5'A | 119.9° | 120.0° |
| O5' | C5' | C4' | H4' | 31.3° | 52.0° |
| O5' | C5' | H5' | H5'A | 120.0° | 120.1° |
| H1' | C1' | C2' | H2' | 29.9° | 1.1° |
| H1' | C1' | C2' | H2'A | 149.9° | 123.8° |
| H2' | C2' | C3' | H3' | 81.6° | 144.0° |
| H2'A | C2' | C3' | H3' | 38.4° | 21.3° |
| H3' | C3' | O3' | HO3' | 56.5° | 62.1° |
| H3' | C3' | C4' | H4' | 90.8° | 160.3° |
| H4' | C4' | C5' | H5' | 151.4° | 68.0° |
| H4' | C4' | C5' | H5'A | 88.6° | 172.0° |
