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Summary Geometry Related PDB entries

8G2

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C8	C5	sing	1.51Å	1.50Å
C8	N	sing	1.47Å	1.49Å
C5	C4	doub	1.38Å	1.39Å	Aromatic
C5	C6	sing	1.38Å	1.39Å	Aromatic
C4	C3	sing	1.38Å	1.38Å	Aromatic
C6	C7	doub	1.38Å	1.38Å	Aromatic
C3	C2	doub	1.40Å	1.39Å	Aromatic
C7	C2	sing	1.40Å	1.39Å	Aromatic
C2	C1	sing	1.48Å	1.48Å
C1	O	sing	1.35Å	1.33Å
C1	O1	doub	1.22Å	1.21Å
O	C	sing	1.45Å	1.44Å
C4	H7	sing	1.08Å	1.08Å
C6	H8	sing	1.08Å	1.08Å
C7	H9	sing	1.08Å	1.08Å
C8	H11	sing	1.09Å	1.10Å
C8	H10	sing	1.09Å	1.10Å
C	H4	sing	1.09Å	1.10Å
C	H3	sing	1.09Å	1.10Å
C	H5	sing	1.09Å	1.10Å
C3	H6	sing	1.08Å	1.08Å
N	H2	sing	1.01Å	1.00Å
N	H	sing	1.01Å	1.00Å
N	H1	sing	1.01Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C5	C8	N	112.4°	109.5°
C8	C5	C4	120.8°	119.8°
C8	C5	C6	120.8°	119.9°
C5	C8	H11	108.8°	109.4°
C5	C8	H10	108.7°	109.5°
N	C8	H11	108.7°	109.5°
N	C8	H10	108.7°	109.5°
C8	N	H2	109.5°	109.5°
C8	N	H	109.5°	109.5°
C8	N	H1	109.5°	109.5°
C4	C5	C6	118.4°	120.3°
C5	C4	C3	121.0°	120.2°
C5	C4	H7	119.5°	119.9°
C5	C6	C7	121.0°	120.1°
C5	C6	H8	119.5°	120.0°
C4	C3	C2	120.5°	119.8°
C3	C4	H7	119.5°	119.9°
C4	C3	H6	119.7°	120.1°
C6	C7	C2	120.6°	119.8°
C7	C6	H8	119.5°	119.9°
C6	C7	H9	119.7°	120.1°
C3	C2	C7	118.5°	119.7°
C3	C2	C1	120.4°	120.1°
C2	C3	H6	119.7°	120.0°
C7	C2	C1	121.1°	120.2°
C2	C7	H9	119.7°	120.1°
C2	C1	O	112.0°	120.0°
C2	C1	O1	124.3°	120.0°
O	C1	O1	123.7°	120.0°
C1	O	C	116.1°	117.0°
O	C	H4	109.5°	109.5°
O	C	H3	109.5°	109.5°
O	C	H5	109.5°	109.5°
H11	C8	H10	109.4°	109.4°
H4	C	H3	109.5°	109.5°
H4	C	H5	109.5°	109.5°
H3	C	H5	109.5°	109.5°
H2	N	H	109.4°	109.5°
H2	N	H1	109.5°	109.5°
H	N	H1	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C5	C8	N	H11	120.5°	120.0°
C5	C8	N	H10	120.5°	120.1°
C8	C5	C4	C6	179.8°	180.0°
C8	C5	C4	C3	179.5°	180.0°
C8	C5	C6	C7	179.6°	180.0°
C8	C5	C4	H7	0.5°	0.2°
C8	C5	C6	H8	0.4°	0.0°
C5	C8	H11	H10	118.7°	120.0°
C5	C8	N	H2	180.0°	180.0°
C5	C8	N	H	60.0°	60.0°
C5	C8	N	H1	60.0°	60.0°
N	C8	C5	C4	131.3°	90.0°
N	C8	C5	C6	49.0°	90.0°
N	C8	H11	H10	118.6°	120.0°
C8	N	H2	H	120.0°	120.0°
C8	N	H2	H1	120.1°	120.0°
C8	N	H	H1	120.0°	120.0°
C5	C4	C3	H7	180.0°	179.8°
C4	C5	C6	C7	0.2°	0.0°
C5	C4	C3	C2	0.2°	0.1°
C4	C5	C6	H8	179.8°	180.0°
C4	C5	C8	H11	10.8°	150.0°
C4	C5	C8	H10	108.3°	30.1°
C5	C4	C3	H6	179.7°	179.7°
C6	C5	C4	C3	0.2°	0.0°
C5	C6	C7	H8	180.0°	180.0°
C5	C6	C7	C2	0.1°	0.0°
C6	C5	C4	H7	179.7°	179.8°
C5	C6	C7	H9	179.8°	179.9°
C6	C5	C8	H11	169.4°	30.0°
C6	C5	C8	H10	71.5°	149.9°
C4	C3	C2	H6	180.0°	179.7°
C4	C3	C2	C7	0.2°	0.1°
C4	C3	C2	C1	179.1°	180.0°
C6	C7	C2	C3	0.1°	0.1°
C6	C7	C2	H9	180.0°	180.0°
C6	C7	C2	C1	179.1°	180.0°
C3	C2	C7	C1	179.2°	179.9°
C3	C2	C1	O	0.6°	0.0°
C3	C2	C1	O1	178.2°	179.9°
C2	C3	C4	H7	179.7°	179.8°
C3	C2	C7	H9	179.9°	179.9°
C7	C2	C1	O	179.8°	179.9°
C7	C2	C1	O1	1.0°	0.0°
C2	C7	C6	H8	179.9°	180.0°
C7	C2	C3	H6	179.8°	179.7°
C2	C1	O	O1	178.8°	179.9°
C2	C1	O	C	174.8°	180.0°
C1	C2	C7	H9	0.9°	0.0°
C1	C2	C3	H6	1.0°	0.3°
C1	O	C	H4	180.0°	180.0°
C1	O	C	H3	60.0°	60.0°
C1	O	C	H5	60.0°	59.9°
O1	C1	O	C	3.9°	0.1°
O	C	H4	H3	120.0°	120.0°
O	C	H4	H5	120.0°	120.0°
O	C	H3	H5	120.0°	120.0°
H7	C4	C3	H6	0.3°	0.1°
H8	C6	C7	H9	0.1°	0.1°
H11	C8	N	H2	59.6°	60.0°
H11	C8	N	H	179.5°	180.0°
H11	C8	N	H1	60.5°	60.0°
H10	C8	N	H2	59.5°	59.9°
H10	C8	N	H	60.4°	60.1°
H10	C8	N	H1	179.5°	179.9°
H4	C	H3	H5	120.0°	120.0°
H2	N	H	H1	120.0°	120.0°

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PDB entries from 2026-01-21

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