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SummaryGeometryRelated PDB entries

8EK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O17C15doub1.21Å1.25Å
O16C15sing1.34Å1.24Å
C15C26sing1.51Å1.62Å
C26C13sing1.51Å1.58Å
C13C14doub1.38Å1.44ÅAromatic
C13C12sing1.38Å1.45ÅAromatic
C14C09sing1.38Å1.46ÅAromatic
C12C11doub1.38Å1.43ÅAromatic
C09C08sing1.51Å1.58Å
C09C10doub1.38Å1.42ÅAromatic
C11C10sing1.38Å1.45ÅAromatic
C08S07sing1.81Å1.93Å
O20C02doub1.22Å1.23Å
C02N03sing1.35Å1.49Å
C02C01sing1.42Å1.56Å
N03C04sing1.36Å1.42Å
S07C04sing1.76Å1.97Å
C04N05doub1.32Å1.35Å
C01C18sing1.43Å1.50Å
C01C06doub1.41Å1.42Å
C18N19trip1.14Å1.17Å
N05C06sing1.34Å1.48Å
C06C21sing1.47Å1.62Å
S25C21sing1.76Å1.76ÅAromatic
S25C24sing1.71Å1.72ÅAromatic
C21C22doub1.37Å1.40ÅAromatic
C24C23doub1.34Å1.35ÅAromatic
C22C23sing1.38Å1.50ÅAromatic
C10H1sing1.08Å1.08Å
C11H2sing1.08Å1.08Å
C12H3sing1.08Å1.08Å
C14H4sing1.08Å1.08Å
C08H5sing1.09Å1.10Å
C08H6sing1.09Å1.10Å
C22H7sing1.08Å1.08Å
C23H8sing1.08Å1.08Å
C24H9sing1.08Å1.08Å
C26H10sing1.09Å1.10Å
C26H11sing1.09Å1.10Å
N03H12sing0.97Å1.00Å
O16H13sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O17C15O16124.9°120.0°
O17C15C26119.1°120.0°
O16C15C26116.0°120.0°
C15O16H13109.5°117.0°
C15C26C13109.9°109.4°
C15C26H10109.3°109.5°
C15C26H11109.3°109.5°
C26C13C14119.2°120.0°
C26C13C12124.3°120.0°
C13C26H10109.4°109.5°
C13C26H11109.4°109.5°
C14C13C12116.5°120.0°
C13C14C09124.1°120.0°
C13C14H4118.0°119.9°
C13C12C11121.3°120.0°
C13C12H3119.4°120.0°
C14C09C08119.5°120.0°
C14C09C10116.6°120.0°
C09C14H4117.9°120.0°
C12C11C10120.0°120.0°
C12C11H2120.0°120.0°
C11C12H3119.3°120.0°
C08C09C10123.9°120.0°
C09C08S07112.6°109.5°
C09C08H5108.7°109.5°
C09C08H6108.7°109.5°
C09C10C11121.5°120.0°
C09C10H1119.3°120.0°
C11C10H1119.3°120.0°
C10C11H2120.0°119.9°
C08S07C04114.8°100.0°
S07C08H5108.7°109.5°
S07C08H6108.7°109.5°
O20C02N03118.8°120.7°
O20C02C01124.1°120.7°
N03C02C01117.2°118.6°
C02N03C04120.0°120.4°
C02N03H12120.0°119.8°
C02C01C18118.8°120.8°
C02C01C06118.5°118.3°
N03C04S07117.7°119.1°
N03C04N05122.4°121.9°
C04N03H12120.0°119.8°
S07C04N05119.9°119.1°
C04N05C06122.7°121.4°
C18C01C06122.7°120.9°
C01C18N19179.7°179.9°
C01C06N05119.3°119.4°
C01C06C21121.9°120.3°
N05C06C21118.9°120.3°
C06C21S25119.0°125.4°
C06C21C22136.8°125.5°
C21S25C2498.5°91.6°
S25C21C22104.1°109.1°
S25C24C23108.7°111.0°
S25C24H9125.7°124.6°
C21C22C23115.9°113.3°
C21C22H7122.1°123.3°
C24C23C22112.8°115.0°
C24C23H8123.6°122.5°
C23C24H9125.7°124.5°
C23C22H7122.1°123.3°
C22C23H8123.6°122.5°
H5C08H6109.5°109.4°
H10C26H11109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O17C15O16C26179.3°180.0°
O17C15C26C1387.5°0.0°
O17C15C26H10152.4°120.0°
O17C15C26H1132.6°120.0°
O17C15O16H130.0°0.1°
O16C15C26C1391.9°180.0°
O16C15C26H1028.2°60.0°
O16C15C26H11148.0°60.0°
C15C26C13H10120.0°120.0°
C15C26C13H11120.1°120.0°
C15C26C13C145.8°90.0°
C15C26C13C12173.9°89.8°
C15C26H10H11119.8°120.0°
C26C15O16H13179.3°179.9°
C26C13C14C12179.7°179.8°
C26C13C14C09179.7°180.0°
C26C13C12C11179.8°179.8°
C26C13C12H30.2°0.2°
C26C13C14H40.3°0.2°
C13C26H10H11119.8°120.0°
C13C14C09H4180.0°179.8°
C14C13C12C110.1°0.0°
C13C14C09C08179.8°180.0°
C13C14C09C100.1°0.5°
C14C13C12H3179.9°180.0°
C14C13C26H10114.2°149.9°
C14C13C26H11125.9°30.0°
C12C13C14C090.0°0.2°
C13C12C11H3180.0°180.0°
C13C12C11C100.2°0.1°
C13C12C11H2179.8°179.9°
C12C13C14H4180.0°180.0°
C12C13C26H1066.1°30.3°
C12C13C26H1153.8°150.2°
C14C09C08C10179.9°179.4°
C14C09C10C110.1°0.6°
C14C09C08S07162.4°90.0°
C14C09C10H1180.0°179.7°
C14C09C08H542.0°150.0°
C14C09C08H677.1°30.1°
C12C11C10C090.1°0.4°
C12C11C10H2180.0°179.9°
C12C11C10H1179.9°179.9°
C08C09C10C11179.9°179.9°
C09C08S07H5120.4°120.0°
C09C08S07H6120.5°120.0°
C09C08S07C0458.3°180.0°
C08C09C10H10.1°0.3°
C08C09C14H40.2°0.2°
C09C08H5H6118.6°119.9°
C09C10C11H1180.0°179.7°
C10C09C08S0717.5°90.6°
C09C10C11H2179.9°179.7°
C10C09C14H4179.9°179.7°
C10C09C08H5138.0°29.4°
C10C09C08H6102.9°149.4°
C10C11C12H3179.8°180.0°
C08S07C04N0382.7°179.7°
C08S07C04N0597.0°0.0°
S07C08H5H6118.6°120.0°
O20C02N03C01179.9°180.0°
O20C02N03C04179.9°180.0°
O20C02C01C180.0°0.0°
O20C02C01C06179.8°179.8°
O20C02N03H120.1°0.0°
C02N03C04H12180.0°180.0°
C02N03C04S07180.0°180.0°
C02N03C04N050.4°0.3°
N03C02C01C18179.9°180.0°
N03C02C01C060.3°0.3°
C01C02N03C040.0°0.0°
C02C01C18C06179.8°179.7°
C02C01C18N19177.1°140.5°
C02C01C06N050.2°0.3°
C02C01C06C21179.7°179.8°
C01C02N03H12180.0°180.0°
N03C04S07N05179.7°179.7°
N03C04N05C060.4°0.3°
S07C04N05C06179.9°180.0°
C04S07C08H562.1°60.0°
C04S07C08H6178.8°60.0°
S07C04N03H120.1°0.0°
C04N05C06C010.1°0.0°
C04N05C06C21179.4°179.9°
N05C04N03H12179.6°179.7°
C18C01C06N05180.0°180.0°
C18C01C06C210.5°0.1°
C06C01C18N192.6°39.2°
C01C06N05C21179.5°179.9°
C01C06C21S25150.1°0.4°
C01C06C21C2229.3°180.0°
N05C06C21S2530.4°179.7°
N05C06C21C22150.2°0.1°
C06C21S25C22179.6°179.6°
C06C21S25C24179.6°179.9°
C06C21C22C23179.6°180.0°
C06C21C22H70.5°0.1°
C21S25C24C230.1°0.4°
S25C21C22C230.1°0.3°
S25C21C22H7179.9°179.8°
C21S25C24H9179.9°179.9°
C24S25C21C220.0°0.4°
S25C24C23H9180.0°179.7°
S25C24C23C220.1°0.3°
S25C24C23H8179.9°179.7°
C21C22C23C240.2°0.0°
C21C22C23H7180.0°179.9°
C21C22C23H8179.8°180.0°
C24C23C22H8180.0°180.0°
C24C23C22H7179.8°179.9°
C22C23C24H9179.9°179.9°
H1C10C11H20.1°0.1°
H2C11C12H30.1°0.1°
H7C22C23H80.2°0.1°
H8C23C24H90.1°0.0°

222415

PDB entries from 2024-07-10

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