8EB
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O6 | C6 | doub | 1.22Å | 1.25Å | |
| C6 | N1 | sing | 1.34Å | 1.34Å | |
| C6 | C5 | sing | 1.47Å | 1.46Å | |
| N1 | C2 | doub | 1.31Å | 1.35Å | |
| C5 | N7 | sing | 1.35Å | 1.34Å | Aromatic |
| C5 | C4 | doub | 1.39Å | 1.46Å | Aromatic |
| C2 | N2 | sing | 1.37Å | 1.36Å | |
| C2 | N3 | sing | 1.36Å | 1.36Å | |
| N7 | C8 | doub | 1.30Å | 1.35Å | Aromatic |
| C4 | N3 | sing | 1.37Å | 1.35Å | |
| C4 | N9 | sing | 1.36Å | 1.33Å | Aromatic |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| O4' | C4' | sing | 1.44Å | 1.42Å | |
| C8 | N9 | sing | 1.36Å | 1.35Å | Aromatic |
| N9 | C1' | sing | 1.47Å | 1.49Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| O5' | PA | sing | 1.61Å | 1.62Å | |
| O1A | PA | doub | 1.48Å | 1.52Å | |
| C1' | C2' | sing | 1.55Å | 1.52Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| SEA | PA | sing | 2.27Å | 1.85Å | |
| C4' | C3' | sing | 1.55Å | 1.52Å | |
| PA | O3A | sing | 1.61Å | 1.64Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| O3A | PB | sing | 1.61Å | 1.64Å | |
| O2B | PB | doub | 1.48Å | 1.51Å | |
| PB | O3B | sing | 1.61Å | 1.61Å | |
| PB | O1B | sing | 1.61Å | 1.52Å | |
| O3B | H1 | sing | 0.97Å | 0.95Å | |
| O1B | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| C8 | H11 | sing | 1.08Å | 1.08Å | |
| N2 | H12 | sing | 0.97Å | 1.00Å | |
| N2 | H13 | sing | 0.97Å | 1.00Å | |
| N3 | H14 | sing | 0.97Å | 1.00Å | |
| SEA | H15 | sing | 1.56Å | 1.46Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O6 | C6 | N1 | 122.5° | 120.8° |
| O6 | C6 | C5 | 119.5° | 120.7° |
| N1 | C6 | C5 | 118.0° | 118.6° |
| C6 | N1 | C2 | 123.0° | 121.4° |
| C6 | C5 | N7 | 135.1° | 134.5° |
| C6 | C5 | C4 | 117.0° | 118.1° |
| N1 | C2 | N2 | 119.9° | 118.8° |
| N1 | C2 | N3 | 121.8° | 122.5° |
| N7 | C5 | C4 | 107.9° | 107.4° |
| C5 | N7 | C8 | 106.0° | 109.1° |
| C5 | C4 | N3 | 119.6° | 118.9° |
| C5 | C4 | N9 | 105.8° | 106.4° |
| N2 | C2 | N3 | 118.3° | 118.7° |
| C2 | N2 | H12 | 120.0° | 120.0° |
| C2 | N2 | H13 | 120.0° | 120.1° |
| C2 | N3 | C4 | 120.6° | 120.5° |
| C2 | N3 | H14 | 119.7° | 119.8° |
| N7 | C8 | N9 | 112.1° | 109.6° |
| N7 | C8 | H11 | 123.9° | 125.2° |
| N3 | C4 | N9 | 134.6° | 134.7° |
| C4 | N3 | H14 | 119.7° | 119.7° |
| C4 | N9 | C8 | 108.1° | 107.5° |
| C4 | N9 | C1' | 124.9° | 126.3° |
| C1' | O4' | C4' | 109.7° | 105.3° |
| O4' | C1' | N9 | 110.0° | 110.3° |
| O4' | C1' | C2' | 106.7° | 104.8° |
| O4' | C1' | H10 | 111.2° | 110.4° |
| O4' | C4' | C5' | 111.1° | 110.4° |
| O4' | C4' | C3' | 104.9° | 104.8° |
| O4' | C4' | H5 | 109.4° | 110.5° |
| C8 | N9 | C1' | 126.9° | 126.3° |
| N9 | C8 | H11 | 123.9° | 125.2° |
| N9 | C1' | C2' | 108.9° | 110.4° |
| N9 | C1' | H10 | 110.2° | 110.4° |
| C5' | O5' | PA | 121.0° | 122.9° |
| O5' | C5' | C4' | 111.5° | 109.4° |
| O5' | C5' | H3 | 108.9° | 109.5° |
| O5' | C5' | H4 | 109.0° | 109.5° |
| O5' | PA | O1A | 110.1° | 109.5° |
| O5' | PA | SEA | 103.6° | 109.5° |
| O5' | PA | O3A | 103.2° | 109.4° |
| O1A | PA | SEA | 114.5° | 109.5° |
| O1A | PA | O3A | 111.1° | 109.5° |
| C1' | C2' | C3' | 101.7° | 104.1° |
| C1' | C2' | H8 | 111.4° | 110.5° |
| C1' | C2' | H9 | 111.4° | 110.6° |
| C2' | C1' | H10 | 109.8° | 110.4° |
| C5' | C4' | C3' | 114.8° | 110.4° |
| C4' | C5' | H3 | 109.0° | 109.5° |
| C4' | C5' | H4 | 108.9° | 109.5° |
| C5' | C4' | H5 | 108.2° | 110.4° |
| SEA | PA | O3A | 113.4° | 109.4° |
| PA | SEA | H15 | 109.5° | 101.0° |
| C4' | C3' | C2' | 101.5° | 104.1° |
| C4' | C3' | O3' | 114.1° | 110.5° |
| C3' | C4' | H5 | 108.1° | 110.3° |
| C4' | C3' | H6 | 109.2° | 110.5° |
| PA | O3A | PB | 132.9° | 134.0° |
| C2' | C3' | O3' | 111.9° | 110.5° |
| C2' | C3' | H6 | 109.3° | 110.6° |
| C3' | C2' | H8 | 111.4° | 110.5° |
| C3' | C2' | H9 | 111.4° | 110.5° |
| O3' | C3' | H6 | 110.4° | 110.5° |
| C3' | O3' | H7 | 109.5° | 114.0° |
| O3A | PB | O2B | 112.3° | 109.5° |
| O3A | PB | O3B | 103.2° | 109.4° |
| O3A | PB | O1B | 109.8° | 109.4° |
| O2B | PB | O3B | 107.0° | 109.5° |
| O2B | PB | O1B | 117.5° | 109.5° |
| O3B | PB | O1B | 105.9° | 109.5° |
| PB | O3B | H1 | 109.5° | 114.0° |
| PB | O1B | H2 | 109.5° | 114.0° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| H8 | C2' | H9 | 109.4° | 110.5° |
| H12 | N2 | H13 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O6 | C6 | N1 | C5 | 179.8° | 179.9° |
| O6 | C6 | N1 | C2 | 179.5° | 180.0° |
| O6 | C6 | C5 | N7 | 0.0° | 0.0° |
| O6 | C6 | C5 | C4 | 179.8° | 179.8° |
| N1 | C6 | C5 | N7 | 179.8° | 180.0° |
| N1 | C6 | C5 | C4 | 0.0° | 0.3° |
| C6 | N1 | C2 | N2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.6° | 0.0° |
| C5 | C6 | N1 | C2 | 0.3° | 0.0° |
| C6 | C5 | N7 | C4 | 179.8° | 179.8° |
| C6 | C5 | N7 | C8 | 179.5° | 180.0° |
| C6 | C5 | C4 | N3 | 0.0° | 0.4° |
| C6 | C5 | C4 | N9 | 179.9° | 179.8° |
| N1 | C2 | N2 | N3 | 179.7° | 180.0° |
| N1 | C2 | N3 | C4 | 0.6° | 0.2° |
| N1 | C2 | N2 | H12 | 0.0° | 0.0° |
| N1 | C2 | N2 | H13 | 180.0° | 180.0° |
| N1 | C2 | N3 | H14 | 179.4° | 180.0° |
| N7 | C5 | C4 | N3 | 179.9° | 179.7° |
| N7 | C5 | C4 | N9 | 0.0° | 0.3° |
| C5 | N7 | C8 | N9 | 1.2° | 0.0° |
| C5 | N7 | C8 | H11 | 178.8° | 180.0° |
| C5 | C4 | N3 | C2 | 0.3° | 0.4° |
| C4 | C5 | N7 | C8 | 0.7° | 0.2° |
| C5 | C4 | N3 | N9 | 179.8° | 179.1° |
| C5 | C4 | N9 | C8 | 0.7° | 0.3° |
| C5 | C4 | N9 | C1' | 179.2° | 179.9° |
| C5 | C4 | N3 | H14 | 179.7° | 179.8° |
| N2 | C2 | N3 | C4 | 179.7° | 179.8° |
| C2 | N2 | H12 | H13 | 180.0° | 180.0° |
| N2 | C2 | N3 | H14 | 0.3° | 0.0° |
| C2 | N3 | C4 | H14 | 180.0° | 179.8° |
| C2 | N3 | C4 | N9 | 179.6° | 179.6° |
| N3 | C2 | N2 | H12 | 179.7° | 180.0° |
| N3 | C2 | N2 | H13 | 0.3° | 0.0° |
| N7 | C8 | N9 | C4 | 1.2° | 0.2° |
| N7 | C8 | N9 | H11 | 180.0° | 180.0° |
| N7 | C8 | N9 | C1' | 179.7° | 179.9° |
| N3 | C4 | N9 | C8 | 179.5° | 179.6° |
| N3 | C4 | N9 | C1' | 1.0° | 0.7° |
| C4 | N9 | C1' | O4' | 148.9° | 156.8° |
| C4 | N9 | C8 | C1' | 178.5° | 179.7° |
| C4 | N9 | C1' | C2' | 94.5° | 87.9° |
| C4 | N9 | C1' | H10 | 26.0° | 34.4° |
| C4 | N9 | C8 | H11 | 178.8° | 179.7° |
| N9 | C4 | N3 | H14 | 0.4° | 0.6° |
| O4' | C1' | N9 | C8 | 32.9° | 23.6° |
| O4' | C1' | N9 | C2' | 116.6° | 115.4° |
| O4' | C1' | N9 | H10 | 122.9° | 122.3° |
| O4' | C1' | C2' | H10 | 120.5° | 118.9° |
| C1' | O4' | C4' | C5' | 145.0° | 159.3° |
| C1' | O4' | C4' | C3' | 20.4° | 40.5° |
| O4' | C1' | C2' | C3' | 26.6° | 24.0° |
| C1' | O4' | C4' | H5 | 95.5° | 78.3° |
| O4' | C1' | C2' | H8 | 92.1° | 94.6° |
| O4' | C1' | C2' | H9 | 145.4° | 142.7° |
| C4' | O4' | C1' | N9 | 113.9° | 159.4° |
| O4' | C4' | C5' | O5' | 54.5° | 69.6° |
| C4' | O4' | C1' | C2' | 4.0° | 40.5° |
| O4' | C4' | C5' | C3' | 118.9° | 115.4° |
| O4' | C4' | C5' | H5 | 120.2° | 122.4° |
| O4' | C4' | C3' | H5 | 116.7° | 118.9° |
| O4' | C4' | C3' | C2' | 36.3° | 24.0° |
| O4' | C4' | C3' | O3' | 156.9° | 142.6° |
| O4' | C4' | C5' | H3 | 174.8° | 50.4° |
| O4' | C4' | C5' | H4 | 65.9° | 170.4° |
| O4' | C4' | C3' | H6 | 79.0° | 94.8° |
| C4' | O4' | C1' | H10 | 123.7° | 78.3° |
| C8 | N9 | C1' | C2' | 83.7° | 91.8° |
| C8 | N9 | C1' | H10 | 155.8° | 145.9° |
| N9 | C1' | C2' | H10 | 120.8° | 122.3° |
| N9 | C1' | C2' | C3' | 92.1° | 142.8° |
| N9 | C1' | C2' | H8 | 149.2° | 24.1° |
| N9 | C1' | C2' | H9 | 26.7° | 98.5° |
| C1' | N9 | C8 | H11 | 0.4° | 0.0° |
| C5' | O5' | PA | O1A | 178.2° | 75.0° |
| O5' | C5' | C4' | H3 | 120.3° | 120.0° |
| O5' | C5' | C4' | H4 | 120.3° | 120.0° |
| C5' | O5' | PA | SEA | 58.9° | 45.0° |
| O5' | C5' | C4' | C3' | 64.4° | 175.0° |
| C5' | O5' | PA | O3A | 59.5° | 165.0° |
| O5' | C5' | H3 | H4 | 119.1° | 120.1° |
| O5' | C5' | C4' | H5 | 174.7° | 52.8° |
| O5' | PA | O1A | SEA | 116.2° | 120.0° |
| O5' | PA | O1A | O3A | 113.7° | 120.0° |
| PA | O5' | C5' | C4' | 122.1° | 180.0° |
| O5' | PA | SEA | O3A | 111.1° | 120.0° |
| O5' | PA | O3A | PB | 118.7° | 180.0° |
| PA | O5' | C5' | H3 | 1.8° | 60.0° |
| PA | O5' | C5' | H4 | 117.6° | 60.0° |
| O5' | PA | SEA | H15 | 180.0° | 60.0° |
| O1A | PA | SEA | O3A | 128.9° | 120.0° |
| O1A | PA | O3A | PB | 123.3° | 60.0° |
| O1A | PA | SEA | H15 | 60.0° | 180.0° |
| C1' | C2' | C3' | C4' | 37.4° | 0.0° |
| C1' | C2' | C3' | H8 | 118.8° | 118.6° |
| C1' | C2' | C3' | H9 | 118.7° | 118.8° |
| C1' | C2' | C3' | O3' | 159.5° | 118.6° |
| C1' | C2' | C3' | H6 | 77.8° | 118.7° |
| C1' | C2' | H8 | H9 | 123.6° | 122.7° |
| C5' | C4' | C3' | H5 | 121.0° | 122.2° |
| C5' | C4' | C3' | C2' | 158.6° | 142.8° |
| C5' | C4' | C3' | O3' | 80.8° | 98.6° |
| C4' | C5' | H3 | H4 | 119.1° | 120.0° |
| C5' | C4' | C3' | H6 | 43.3° | 24.1° |
| SEA | PA | O3A | PB | 7.4° | 60.0° |
| C4' | C3' | C2' | O3' | 122.1° | 118.6° |
| C4' | C3' | C2' | H6 | 115.2° | 118.7° |
| C4' | C3' | O3' | H6 | 123.4° | 122.6° |
| C3' | C4' | C5' | H3 | 55.9° | 65.0° |
| C3' | C4' | C5' | H4 | 175.2° | 55.0° |
| C4' | C3' | O3' | H7 | 180.0° | 180.0° |
| C4' | C3' | C2' | H8 | 81.3° | 118.6° |
| C4' | C3' | C2' | H9 | 156.2° | 118.8° |
| PA | O3A | PB | O2B | 26.2° | 39.9° |
| PA | O3A | PB | O3B | 88.7° | 160.0° |
| PA | O3A | PB | O1B | 158.8° | 80.0° |
| O3A | PA | SEA | H15 | 68.9° | 60.0° |
| C2' | C3' | O3' | H6 | 122.0° | 122.8° |
| C2' | C3' | C4' | H5 | 80.4° | 94.9° |
| C2' | C3' | O3' | H7 | 65.5° | 65.4° |
| C3' | C2' | H8 | H9 | 123.6° | 122.7° |
| C3' | C2' | C1' | H10 | 147.2° | 94.9° |
| O3' | C3' | C4' | H5 | 40.1° | 23.7° |
| O3' | C3' | C2' | H8 | 40.8° | 122.7° |
| O3' | C3' | C2' | H9 | 81.7° | 0.1° |
| O3A | PB | O2B | O3B | 112.5° | 120.0° |
| O3A | PB | O2B | O1B | 128.7° | 119.9° |
| O3A | PB | O3B | O1B | 115.3° | 120.0° |
| O3A | PB | O3B | H1 | 118.6° | 180.0° |
| O3A | PB | O1B | H2 | 129.8° | 60.0° |
| O2B | PB | O3B | O1B | 126.1° | 120.1° |
| O2B | PB | O3B | H1 | 0.0° | 60.1° |
| O2B | PB | O1B | H2 | 0.0° | 180.0° |
| O3B | PB | O1B | H2 | 119.4° | 59.9° |
| O1B | PB | O3B | H1 | 126.1° | 60.0° |
| H3 | C5' | C4' | H5 | 65.1° | 172.8° |
| H4 | C5' | C4' | H5 | 54.3° | 67.2° |
| H5 | C4' | C3' | H6 | 164.2° | 146.3° |
| H6 | C3' | O3' | H7 | 56.5° | 57.4° |
| H6 | C3' | C2' | H8 | 163.4° | 0.1° |
| H6 | C3' | C2' | H9 | 40.9° | 122.5° |
| H8 | C2' | C1' | H10 | 28.4° | 146.5° |
| H9 | C2' | C1' | H10 | 94.1° | 23.8° |
