8DT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.44Å
C3'	C4'	sing	1.55Å	1.49Å
C3'	C2'	sing	1.55Å	1.52Å
C4'	C5'	sing	1.53Å	1.50Å
C4'	O4'	sing	1.44Å	1.44Å
OP1	P	doub	1.48Å	1.51Å
C2'	C1'	sing	1.54Å	1.53Å
C5'	O5'	sing	1.43Å	1.43Å
O4'	C1'	sing	1.44Å	1.41Å
C1'	N1	sing	1.46Å	1.45Å
O5'	P	sing	1.61Å	1.63Å
P	OP2	sing	1.61Å	1.53Å
O2	C2	doub	1.22Å	1.25Å
N1	C2	sing	1.34Å	1.37Å
N1	C6	sing	1.37Å	1.34Å
C2	N3	sing	1.35Å	1.37Å
C6	C5	doub	1.37Å	1.39Å
N3	C4	sing	1.35Å	1.37Å
C5	C4	sing	1.47Å	1.38Å
C5	C7	sing	1.48Å	1.49Å
C4	O4	doub	1.22Å	1.26Å
C7	C1	doub	1.33Å	1.33Å
C1	C3	sing	1.51Å	1.51Å
C3	N9	sing	1.46Å	1.46Å
N9	C32	sing	1.35Å	1.35Å
O34	C32	doub	1.21Å	1.27Å
C32	C33	sing	1.51Å	1.54Å
OP2	H2	sing	0.97Å	0.95Å
C5'	H3	sing	1.09Å	1.10Å
C5'	H4	sing	1.09Å	1.10Å
C4'	H5	sing	1.09Å	1.10Å
C3'	H6	sing	1.09Å	1.10Å
O3'	H7	sing	0.97Å	0.95Å
C2'	H8	sing	1.09Å	1.10Å
C2'	H9	sing	1.09Å	1.10Å
C1'	H10	sing	1.09Å	1.10Å
C6	H11	sing	1.08Å	1.08Å
N3	H12	sing	0.97Å	1.00Å
C7	H13	sing	1.08Å	1.08Å
C1	H14	sing	1.08Å	1.08Å
C3	H15	sing	1.09Å	1.10Å
C3	H16	sing	1.09Å	1.10Å
N9	H17	sing	0.97Å	1.00Å
C33	H18	sing	1.09Å	1.10Å
C33	H19	sing	1.09Å	1.10Å
C33	H20	sing	1.09Å	1.10Å
P	OP3	sing	1.61Å	1.54Å
OP3	H1	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C4'	110.9°	110.9°
O3'	C3'	C2'	105.3°	110.9°
O3'	C3'	H6	112.9°	110.8°
C3'	O3'	H7	109.5°	114.0°
C4'	C3'	C2'	103.4°	102.1°
C3'	C4'	C5'	117.2°	110.6°
C3'	C4'	O4'	106.5°	103.5°
C3'	C4'	H5	108.1°	110.7°
C4'	C3'	H6	112.0°	110.9°
C3'	C2'	C1'	102.0°	104.2°
C2'	C3'	H6	111.7°	110.9°
C3'	C2'	H8	111.3°	110.5°
C3'	C2'	H9	111.3°	110.5°
C5'	C4'	O4'	108.0°	110.6°
C4'	C5'	O5'	115.0°	109.5°
C4'	C5'	H3	108.0°	109.5°
C4'	C5'	H4	108.1°	109.5°
C5'	C4'	H5	108.1°	110.5°
C4'	O4'	C1'	110.7°	107.0°
O4'	C4'	H5	108.7°	110.6°
OP1	P	O5'	98.3°	109.5°
OP1	P	OP2	108.7°	109.4°
OP1	P	OP3	128.2°	109.5°
C2'	C1'	O4'	104.5°	107.3°
C2'	C1'	N1	114.8°	109.9°
C1'	C2'	H8	111.3°	110.5°
C1'	C2'	H9	111.3°	110.5°
C2'	C1'	H10	108.6°	109.9°
C5'	O5'	P	115.6°	123.0°
O5'	C5'	H3	108.1°	109.4°
O5'	C5'	H4	108.1°	109.5°
O4'	C1'	N1	108.9°	109.9°
O4'	C1'	H10	110.3°	109.8°
C1'	N1	C2	120.0°	119.3°
C1'	N1	C6	119.2°	119.3°
N1	C1'	H10	109.7°	110.0°
O5'	P	OP2	98.8°	109.5°
O5'	P	OP3	106.9°	109.5°
P	OP2	H2	109.5°	114.0°
OP2	P	OP3	111.1°	109.5°
O2	C2	N1	116.9°	119.1°
O2	C2	N3	122.4°	119.0°
C2	N1	C6	120.6°	121.4°
N1	C2	N3	120.7°	121.9°
N1	C6	C5	120.4°	119.5°
N1	C6	H11	119.8°	120.2°
C2	N3	C4	118.6°	120.3°
C2	N3	H12	120.7°	119.9°
C6	C5	C4	118.6°	118.3°
C6	C5	C7	115.9°	120.8°
C5	C6	H11	119.8°	120.3°
N3	C4	C5	121.0°	118.7°
N3	C4	O4	119.5°	120.7°
C4	N3	H12	120.7°	119.9°
C4	C5	C7	125.4°	120.9°
C5	C4	O4	119.4°	120.7°
C5	C7	C1	124.0°	120.0°
C5	C7	H13	118.0°	120.0°
C7	C1	C3	123.4°	120.0°
C1	C7	H13	118.0°	120.0°
C7	C1	H14	118.3°	120.0°
C1	C3	N9	101.0°	109.4°
C3	C1	H14	118.3°	120.0°
C1	C3	H15	111.5°	109.5°
C1	C3	H16	111.5°	109.5°
C3	N9	C32	127.7°	120.0°
N9	C3	H15	111.5°	109.5°
N9	C3	H16	111.5°	109.4°
C3	N9	H17	116.2°	120.0°
N9	C32	O34	122.8°	120.0°
N9	C32	C33	111.3°	120.0°
C32	N9	H17	116.2°	119.9°
O34	C32	C33	125.8°	120.0°
C32	C33	H18	109.5°	109.4°
C32	C33	H19	109.5°	109.5°
C32	C33	H20	109.5°	109.5°
H3	C5'	H4	109.5°	109.5°
H8	C2'	H9	109.5°	110.5°
H15	C3	H16	109.5°	109.5°
H18	C33	H19	109.4°	109.5°
H18	C33	H20	109.5°	109.5°
H19	C33	H20	109.5°	109.4°
P	OP3	H1	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C4'	C2'	112.4°	118.2°
O3'	C3'	C4'	H6	127.1°	123.6°
O3'	C3'	C2'	H6	122.9°	123.6°
O3'	C3'	C4'	C5'	150.0°	86.2°
O3'	C3'	C4'	O4'	89.0°	155.2°
O3'	C3'	C2'	C1'	82.2°	139.1°
O3'	C3'	C4'	H5	27.7°	36.6°
O3'	C3'	C2'	H8	159.0°	102.3°
O3'	C3'	C2'	H9	36.6°	20.4°
C4'	C3'	C2'	H6	120.7°	118.2°
C3'	C4'	C5'	O4'	120.2°	114.1°
C3'	C4'	C5'	H5	122.3°	123.0°
C3'	C4'	O4'	H5	116.2°	118.6°
C4'	C3'	C2'	C1'	34.3°	20.9°
C3'	C4'	C5'	O5'	42.6°	179.5°
C3'	C4'	O4'	C1'	2.2°	40.0°
C3'	C4'	C5'	H3	163.4°	60.6°
C3'	C4'	C5'	H4	78.3°	59.4°
C4'	C3'	O3'	H7	180.0°	180.0°
C4'	C3'	C2'	H8	84.5°	139.5°
C4'	C3'	C2'	H9	153.1°	97.8°
C2'	C3'	C4'	C5'	97.6°	155.5°
C2'	C3'	C4'	O4'	23.4°	37.0°
C3'	C2'	C1'	H8	118.8°	118.7°
C3'	C2'	C1'	H9	118.8°	118.7°
C3'	C2'	C1'	O4'	33.4°	2.0°
C3'	C2'	C1'	N1	152.6°	121.5°
C2'	C3'	C4'	H5	140.1°	81.6°
C2'	C3'	O3'	H7	68.7°	67.3°
C3'	C2'	H8	H9	123.5°	122.6°
C3'	C2'	C1'	H10	84.2°	117.3°
C5'	C4'	O4'	H5	117.0°	122.8°
C4'	C5'	O5'	H3	120.8°	119.9°
C4'	C5'	O5'	H4	120.8°	120.0°
C5'	C4'	O4'	C1'	124.6°	158.6°
C4'	C5'	O5'	P	166.8°	180.0°
C4'	C5'	H3	H4	117.5°	120.0°
C5'	C4'	C3'	H6	22.8°	37.4°
C4'	O4'	C1'	C2'	19.9°	26.5°
O4'	C4'	C5'	O5'	77.7°	66.4°
C4'	O4'	C1'	N1	143.0°	145.9°
O4'	C4'	C5'	H3	43.1°	53.5°
O4'	C4'	C5'	H4	161.5°	173.5°
O4'	C4'	C3'	H6	143.9°	81.2°
C4'	O4'	C1'	H10	96.6°	92.9°
OP1	P	O5'	C5'	61.0°	55.0°
OP1	P	O5'	OP2	110.6°	120.0°
OP1	P	O5'	OP3	134.2°	120.0°
OP1	P	OP2	OP3	146.1°	120.0°
OP1	P	OP2	H2	0.0°	180.0°
OP1	P	OP3	H1	0.0°	60.0°
C2'	C1'	O4'	N1	123.1°	119.5°
C2'	C1'	O4'	H10	116.5°	119.4°
C2'	C1'	N1	H10	122.6°	121.1°
C2'	C1'	N1	C2	118.5°	65.0°
C2'	C1'	N1	C6	66.0°	115.3°
C1'	C2'	C3'	H6	154.9°	97.3°
C1'	C2'	H8	H9	123.5°	122.6°
C5'	O5'	P	OP2	171.6°	65.0°
O5'	C5'	H3	H4	117.5°	120.0°
O5'	C5'	C4'	H5	164.9°	56.5°
C5'	O5'	P	OP3	73.2°	175.0°
O4'	C1'	N1	H10	120.7°	121.1°
O4'	C1'	N1	C2	124.8°	52.8°
O4'	C1'	N1	C6	50.7°	126.9°
C1'	O4'	C4'	H5	118.4°	78.6°
O4'	C1'	C2'	H8	85.3°	116.7°
O4'	C1'	C2'	H9	152.2°	120.7°
C1'	N1	C2	O2	1.0°	0.1°
C1'	N1	C2	C6	175.4°	179.7°
C1'	N1	C2	N3	177.6°	180.0°
C1'	N1	C6	C5	179.6°	180.0°
N1	C1'	C2'	H8	33.8°	2.8°
N1	C1'	C2'	H9	88.6°	119.9°
C1'	N1	C6	H11	0.4°	0.0°
O5'	P	OP2	OP3	112.0°	120.0°
O5'	P	OP2	H2	101.9°	60.0°
P	O5'	C5'	H3	72.4°	60.0°
P	O5'	C5'	H4	46.0°	60.0°
O5'	P	OP3	H1	115.5°	180.0°
OP2	P	OP3	H1	137.8°	59.9°
O2	C2	N1	N3	178.6°	179.9°
O2	C2	N1	C6	176.4°	179.8°
O2	C2	N3	C4	178.8°	180.0°
O2	C2	N3	H12	1.2°	0.1°
C2	N1	C6	C5	4.1°	0.3°
N1	C2	N3	C4	0.3°	0.0°
C2	N1	C1'	H10	4.1°	173.9°
C2	N1	C6	H11	175.9°	179.7°
N1	C2	N3	H12	179.8°	180.0°
C6	N1	C2	N3	2.2°	0.3°
N1	C6	C5	H11	180.0°	180.0°
N1	C6	C5	C4	3.6°	0.1°
N1	C6	C5	C7	178.1°	180.0°
C6	N1	C1'	H10	171.4°	5.8°
C2	N3	C4	H12	180.0°	180.0°
C2	N3	C4	C5	0.8°	0.2°
C2	N3	C4	O4	179.5°	179.9°
C6	C5	C4	N3	1.1°	0.2°
C6	C5	C4	C7	178.2°	180.0°
C6	C5	C4	O4	177.6°	180.0°
C6	C5	C7	C1	175.2°	174.4°
C6	C5	C7	H13	4.9°	5.6°
N3	C4	C5	O4	178.7°	179.9°
N3	C4	C5	C7	179.3°	179.8°
C4	C5	C7	C1	3.1°	5.6°
C4	C5	C6	H11	176.4°	180.0°
C5	C4	N3	H12	179.3°	179.8°
C4	C5	C7	H13	176.9°	174.4°
C7	C5	C4	O4	0.6°	0.1°
C5	C7	C1	H13	180.0°	179.9°
C5	C7	C1	C3	176.8°	175.0°
C7	C5	C6	H11	1.9°	0.0°
C5	C7	C1	H14	3.2°	5.1°
O4	C4	N3	H12	0.5°	0.1°
C7	C1	C3	H14	180.0°	179.9°
C7	C1	C3	N9	177.8°	125.0°
C7	C1	C3	H15	63.6°	115.0°
C7	C1	C3	H16	59.1°	5.1°
C1	C3	N9	H15	118.6°	120.0°
C1	C3	N9	H16	118.6°	120.0°
C1	C3	N9	C32	104.4°	180.0°
C3	C1	C7	H13	3.2°	5.0°
C1	C3	H15	H16	123.9°	120.0°
C1	C3	N9	H17	75.6°	0.0°
C3	N9	C32	H17	180.0°	179.9°
C3	N9	C32	O34	11.2°	0.1°
C3	N9	C32	C33	167.7°	180.0°
N9	C3	C1	H14	2.2°	55.0°
N9	C3	H15	H16	123.9°	120.0°
N9	C32	O34	C33	178.7°	179.9°
C32	N9	C3	H15	14.2°	60.0°
C32	N9	C3	H16	137.0°	60.0°
N9	C32	C33	H18	178.9°	60.1°
N9	C32	C33	H19	61.2°	179.9°
N9	C32	C33	H20	58.8°	60.0°
O34	C32	N9	H17	168.8°	180.0°
O34	C32	C33	H18	0.0°	120.0°
O34	C32	C33	H19	120.0°	0.0°
O34	C32	C33	H20	120.0°	119.9°
C33	C32	N9	H17	12.3°	0.1°
C32	C33	H18	H19	120.0°	120.0°
C32	C33	H18	H20	120.0°	120.0°
C32	C33	H19	H20	120.0°	120.0°
H2	OP2	P	OP3	146.1°	60.0°
H3	C5'	C4'	H5	74.3°	176.4°
H4	C5'	C4'	H5	44.1°	63.6°
H5	C4'	C3'	H6	99.5°	160.2°
H6	C3'	O3'	H7	53.3°	56.4°
H6	C3'	C2'	H8	36.2°	21.3°
H6	C3'	C2'	H9	86.3°	144.0°
H8	C2'	C1'	H10	157.0°	124.0°
H9	C2'	C1'	H10	34.6°	1.3°
H13	C7	C1	H14	176.8°	175.0°
H14	C1	C3	H15	116.4°	65.0°
H14	C1	C3	H16	120.9°	175.0°
H15	C3	N9	H17	165.8°	119.9°
H16	C3	N9	H17	43.1°	120.0°
H18	C33	H19	H20	120.0°	120.0°

Release date:	2016-09-21
Definition date:	2016-09-12
Last modified:	2016-09-16
Release status:	REL
Processing site:	EBI
Derived from:	5LUY