8C6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3'	C3'	sing	1.43Å	1.46Å
O	C2'	sing	1.43Å	1.46Å
C3'	C2'	sing	1.55Å	1.46Å
C3'	C4'	sing	1.54Å	1.48Å
C2'	C1'	sing	1.55Å	1.47Å
O1B	PB	doub	1.48Å	1.48Å
O2A	PA	sing	1.61Å	1.48Å
C4'	C5'	sing	1.53Å	1.50Å
C4'	O4'	sing	1.44Å	1.50Å
C5'	O5'	sing	1.43Å	1.44Å
C1'	O4'	sing	1.44Å	1.51Å
C1'	N9	sing	1.46Å	1.40Å
O2B	PB	sing	1.61Å	1.49Å
PB	C3A	sing	1.82Å	1.83Å
PB	O3B	sing	1.61Å	1.48Å
PA	O5'	sing	1.61Å	1.62Å
PA	C3A	sing	1.82Å	1.82Å
PA	O1A	doub	1.48Å	1.48Å
C3A	CL2	sing	1.80Å	1.73Å
N9	C4	sing	1.37Å	1.29Å	Aromatic
N9	C8	sing	1.36Å	1.28Å	Aromatic
N3	C4	doub	1.33Å	1.34Å	Aromatic
N3	C2	sing	1.32Å	1.35Å	Aromatic
C4	C5	sing	1.41Å	1.47Å	Aromatic
C8	N7	doub	1.30Å	1.37Å	Aromatic
C2	N1	doub	1.32Å	1.35Å	Aromatic
C5	N7	sing	1.35Å	1.53Å	Aromatic
C5	C6	doub	1.41Å	1.39Å	Aromatic
N1	C6	sing	1.33Å	1.34Å	Aromatic
C6	N6	sing	1.38Å	1.46Å
O2B	H1	sing	0.97Å	0.95Å
O3B	H2	sing	0.97Å	0.95Å
C5'	H4	sing	1.09Å	1.10Å
C5'	H5	sing	1.09Å	1.10Å
C4'	H6	sing	1.09Å	1.10Å
C3'	H7	sing	1.09Å	1.10Å
O3'	H8	sing	0.97Å	0.95Å
C2'	H9	sing	1.09Å	1.10Å
C1'	H10	sing	1.09Å	1.10Å
C8	H11	sing	1.08Å	1.08Å
N6	H12	sing	0.97Å	1.00Å
N6	H13	sing	0.97Å	1.00Å
C2	H14	sing	1.08Å	1.08Å
O	H15	sing	0.97Å	0.95Å
C3A	H16	sing	1.09Å	1.10Å
O2A	H3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C3'	C2'	110.6°	110.5°
O3'	C3'	C4'	110.7°	110.5°
O3'	C3'	H7	109.6°	110.6°
C3'	O3'	H8	109.5°	114.0°
O	C2'	C3'	109.6°	110.9°
O	C2'	C1'	109.3°	111.0°
O	C2'	H9	110.1°	110.8°
C2'	O	H15	109.5°	114.1°
C2'	C3'	C4'	106.8°	104.2°
C3'	C2'	C1'	107.6°	102.1°
C2'	C3'	H7	109.7°	110.5°
C3'	C2'	H9	110.2°	110.9°
C3'	C4'	C5'	110.6°	109.9°
C3'	C4'	O4'	107.1°	107.3°
C3'	C4'	H6	109.6°	110.0°
C4'	C3'	H7	109.4°	110.5°
C2'	C1'	O4'	107.8°	103.5°
C2'	C1'	N9	110.7°	110.6°
C1'	C2'	H9	110.1°	110.9°
C2'	C1'	H10	108.9°	110.6°
O1B	PB	O2B	103.7°	109.5°
O1B	PB	C3A	114.6°	109.4°
O1B	PB	O3B	104.8°	109.5°
O2A	PA	O5'	111.2°	109.5°
O2A	PA	C3A	111.6°	109.4°
O2A	PA	O1A	100.8°	109.5°
PA	O2A	H3	109.5°	114.0°
C5'	C4'	O4'	111.0°	109.9°
C4'	C5'	O5'	110.4°	109.4°
C4'	C5'	H4	109.3°	109.4°
C4'	C5'	H5	109.3°	109.5°
C5'	C4'	H6	109.3°	109.9°
C4'	O4'	C1'	105.0°	107.0°
O4'	C4'	H6	109.2°	109.8°
C5'	O5'	PA	121.0°	123.0°
O5'	C5'	H4	109.2°	109.5°
O5'	C5'	H5	109.2°	109.5°
O4'	C1'	N9	111.1°	110.6°
O4'	C1'	H10	108.4°	110.6°
C1'	N9	C4	119.1°	126.3°
C1'	N9	C8	119.8°	126.3°
N9	C1'	H10	109.9°	110.7°
O2B	PB	C3A	114.1°	109.5°
O2B	PB	O3B	104.5°	109.5°
PB	O2B	H1	109.5°	114.0°
C3A	PB	O3B	114.0°	109.5°
PB	C3A	PA	109.6°	109.5°
PB	C3A	CL2	109.6°	109.5°
PB	C3A	H16	109.1°	109.5°
PB	O3B	H2	109.5°	114.0°
O5'	PA	C3A	111.2°	109.5°
O5'	PA	O1A	110.9°	109.5°
C3A	PA	O1A	110.6°	109.5°
PA	C3A	CL2	109.2°	109.5°
PA	C3A	H16	109.1°	109.5°
CL2	C3A	H16	110.2°	109.4°
C4	N9	C8	121.1°	107.4°
N9	C4	N3	139.1°	134.9°
N9	C4	C5	103.1°	106.0°
N9	C8	N7	107.2°	110.0°
N9	C8	H11	126.4°	125.0°
C4	N3	C2	119.4°	120.6°
N3	C4	C5	117.8°	119.1°
N3	C2	N1	123.9°	122.5°
N3	C2	H14	118.0°	118.8°
C4	C5	N7	103.6°	107.2°
C4	C5	C6	119.3°	118.1°
C8	N7	C5	105.1°	109.5°
N7	C8	H11	126.4°	125.1°
C2	N1	C6	120.5°	121.2°
N1	C2	H14	118.1°	118.8°
N7	C5	C6	137.0°	134.7°
C5	C6	N1	119.0°	118.4°
C5	C6	N6	120.6°	120.8°
N1	C6	N6	120.5°	120.8°
C6	N6	H12	109.5°	120.0°
C6	N6	H13	109.5°	120.0°
H4	C5'	H5	109.5°	109.5°
H12	N6	H13	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C3'	C2'	O	25.0°	20.4°
O3'	C3'	C2'	C4'	120.6°	118.7°
O3'	C3'	C2'	H7	121.0°	122.6°
O3'	C3'	C4'	H7	120.9°	122.7°
O3'	C3'	C2'	C1'	143.7°	97.9°
O3'	C3'	C4'	C5'	94.5°	119.9°
O3'	C3'	C4'	O4'	144.4°	120.7°
O3'	C3'	C4'	H6	26.0°	1.3°
O3'	C3'	C2'	H9	96.3°	144.0°
O	C2'	C3'	C1'	118.7°	118.3°
O	C2'	C3'	H9	121.3°	123.6°
O	C2'	C3'	C4'	95.6°	139.1°
O	C2'	C1'	H9	121.0°	123.6°
O	C2'	C1'	O4'	105.4°	155.2°
O	C2'	C1'	N9	133.0°	86.2°
O	C2'	C3'	H7	146.0°	102.2°
O	C2'	C1'	H10	12.0°	36.7°
C2'	C3'	C4'	H7	118.6°	118.6°
C3'	C2'	C1'	H9	120.1°	118.2°
C2'	C3'	C4'	C5'	145.0°	121.5°
C2'	C3'	C4'	O4'	23.8°	2.0°
C3'	C2'	C1'	O4'	13.5°	37.0°
C3'	C2'	C1'	N9	108.1°	155.5°
C2'	C3'	C4'	H6	94.5°	117.4°
C2'	C3'	O3'	H8	180.0°	61.4°
C3'	C2'	C1'	H10	130.9°	81.5°
C3'	C2'	O	H15	180.0°	61.5°
C4'	C3'	C2'	C1'	23.1°	20.8°
C3'	C4'	C5'	O4'	118.8°	117.8°
C3'	C4'	C5'	H6	120.7°	121.2°
C3'	C4'	O4'	H6	118.6°	119.6°
C3'	C4'	C5'	O5'	76.5°	175.7°
C3'	C4'	O4'	C1'	15.1°	26.5°
C3'	C4'	C5'	H4	163.4°	64.3°
C3'	C4'	C5'	H5	43.7°	55.7°
C4'	C3'	O3'	H8	61.8°	176.2°
C4'	C3'	C2'	H9	143.1°	97.3°
C2'	C1'	O4'	C4'	1.1°	40.0°
C2'	C1'	O4'	N9	121.4°	118.6°
C2'	C1'	O4'	H10	117.8°	118.4°
C2'	C1'	N9	H10	120.4°	122.9°
C2'	C1'	N9	C4	98.0°	84.9°
C2'	C1'	N9	C8	82.1°	94.7°
C1'	C2'	C3'	H7	95.2°	139.5°
C1'	C2'	O	H15	62.3°	174.2°
O1B	PB	O2B	C3A	125.3°	119.9°
O1B	PB	O2B	O3B	109.5°	120.0°
O1B	PB	C3A	O3B	120.7°	120.0°
O1B	PB	C3A	PA	52.7°	60.0°
O1B	PB	C3A	CL2	172.5°	60.0°
O1B	PB	O2B	H1	0.0°	179.9°
O1B	PB	O3B	H2	0.0°	60.0°
O1B	PB	C3A	H16	66.8°	180.0°
O2A	PA	O5'	C5'	66.0°	65.0°
O2A	PA	C3A	PB	49.7°	60.0°
O2A	PA	O5'	C3A	125.1°	120.0°
O2A	PA	O5'	O1A	111.4°	120.0°
O2A	PA	C3A	O1A	111.4°	120.0°
O2A	PA	C3A	CL2	169.8°	180.0°
O2A	PA	C3A	H16	69.8°	60.0°
C5'	C4'	O4'	H6	120.5°	121.0°
C4'	C5'	O5'	H4	120.1°	120.0°
C4'	C5'	O5'	H5	120.2°	120.0°
C5'	C4'	O4'	C1'	136.0°	145.9°
C4'	C5'	O5'	PA	143.6°	180.0°
C4'	C5'	H4	H5	119.6°	120.0°
C5'	C4'	C3'	H7	26.4°	2.8°
O4'	C4'	C5'	O5'	42.3°	66.5°
C4'	O4'	C1'	N9	122.5°	158.6°
O4'	C4'	C5'	H4	77.8°	53.5°
O4'	C4'	C5'	H5	162.5°	173.5°
O4'	C4'	C3'	H7	94.8°	116.6°
C4'	O4'	C1'	H10	116.7°	78.4°
C5'	O5'	PA	C3A	59.1°	175.0°
C5'	O5'	PA	O1A	177.4°	55.0°
O5'	C5'	H4	H5	119.6°	120.0°
O5'	C5'	C4'	H6	162.8°	54.5°
O4'	C1'	N9	H10	119.9°	122.9°
O4'	C1'	N9	C4	142.2°	160.9°
O4'	C1'	N9	C8	37.7°	19.4°
C1'	O4'	C4'	H6	103.5°	93.1°
O4'	C1'	C2'	H9	133.6°	81.2°
C1'	N9	C4	C8	179.9°	179.7°
C1'	N9	C4	N3	0.0°	0.7°
C1'	N9	C4	C5	179.7°	179.9°
C1'	N9	C8	N7	179.8°	179.9°
N9	C1'	C2'	H9	12.0°	37.4°
C1'	N9	C8	H11	0.2°	0.1°
O2B	PB	C3A	O3B	120.0°	120.0°
O2B	PB	C3A	PA	172.0°	60.0°
O2B	PB	C3A	CL2	68.2°	180.0°
O2B	PB	O3B	H2	108.7°	60.0°
O2B	PB	C3A	H16	52.5°	60.1°
PB	C3A	PA	O5'	174.5°	180.0°
PB	C3A	PA	CL2	120.1°	120.0°
PB	C3A	PA	H16	119.4°	120.1°
PB	C3A	PA	O1A	61.7°	60.0°
PB	C3A	CL2	H16	120.1°	120.0°
C3A	PB	O2B	H1	125.3°	60.0°
C3A	PB	O3B	H2	126.1°	180.0°
O3B	PB	C3A	PA	68.0°	180.0°
O3B	PB	C3A	CL2	51.8°	60.0°
O3B	PB	O2B	H1	109.5°	60.0°
O3B	PB	C3A	H16	172.5°	60.0°
O5'	PA	C3A	O1A	123.8°	120.0°
O5'	PA	C3A	CL2	65.4°	60.0°
PA	O5'	C5'	H4	96.3°	60.0°
PA	O5'	C5'	H5	23.4°	60.0°
O5'	PA	C3A	H16	55.1°	59.9°
O5'	PA	O2A	H3	117.7°	59.9°
PA	C3A	CL2	H16	119.8°	120.0°
C3A	PA	O2A	H3	117.5°	60.0°
O1A	PA	C3A	CL2	58.4°	60.0°
O1A	PA	C3A	H16	178.8°	180.0°
O1A	PA	O2A	H3	0.0°	180.0°
N9	C4	N3	C5	179.6°	179.1°
N9	C4	N3	C2	179.5°	179.6°
C4	N9	C8	N7	0.1°	0.2°
N9	C4	C5	N7	0.2°	0.4°
N9	C4	C5	C6	179.9°	179.8°
C4	N9	C1'	H10	22.3°	38.0°
C4	N9	C8	H11	179.9°	179.8°
C8	N9	C4	N3	179.9°	179.6°
C8	N9	C4	C5	0.2°	0.4°
N9	C8	N7	H11	180.0°	180.0°
N9	C8	N7	C5	0.1°	0.0°
C8	N9	C1'	H10	157.6°	142.4°
C4	N3	C2	N1	0.3°	0.2°
N3	C4	C5	N7	180.0°	179.7°
N3	C4	C5	C6	0.4°	0.5°
C4	N3	C2	H14	179.7°	179.8°
C2	N3	C4	C5	0.1°	0.5°
N3	C2	N1	H14	180.0°	180.0°
N3	C2	N1	C6	0.1°	0.1°
C4	C5	N7	C8	0.2°	0.2°
C4	C5	N7	C6	179.6°	179.8°
C4	C5	C6	N1	0.7°	0.2°
C4	C5	C6	N6	179.1°	179.7°
C8	N7	C5	C6	179.8°	180.0°
C2	N1	C6	C5	0.7°	0.0°
C2	N1	C6	N6	179.2°	180.0°
N7	C5	C6	N1	179.7°	180.0°
N7	C5	C6	N6	0.4°	0.0°
C5	N7	C8	H11	179.9°	180.0°
C5	C6	N1	N6	179.9°	179.9°
C5	C6	N6	H12	179.9°	0.1°
C5	C6	N6	H13	60.1°	180.0°
N1	C6	N6	H12	0.0°	180.0°
N1	C6	N6	H13	120.0°	0.1°
C6	N1	C2	H14	179.9°	180.0°
C6	N6	H12	H13	120.0°	179.9°
H4	C5'	C4'	H6	42.7°	174.5°
H5	C5'	C4'	H6	77.0°	65.5°
H6	C4'	C3'	H7	146.9°	123.9°
H7	C3'	O3'	H8	58.9°	61.2°
H7	C3'	C2'	H9	24.7°	21.4°
H9	C2'	C1'	H10	109.0°	160.3°
H9	C2'	O	H15	58.7°	62.1°

Release date:	2017-09-06
Definition date:	2017-06-07
Last modified:	2017-09-01
Release status:	REL
Processing site:	PDBJ
Derived from:	5XP7