8AZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.50Å | |
| N7 | C5 | sing | 1.32Å | 1.36Å | Aromatic |
| N7 | N8 | doub | 1.29Å | 1.33Å | Aromatic |
| O6 | C6 | sing | 1.43Å | 1.43Å | |
| OP2 | P | sing | 1.61Å | 1.52Å | |
| C6 | C5 | sing | 1.51Å | 1.50Å | |
| C6 | N1 | sing | 1.47Å | 1.46Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| C5 | C4 | doub | 1.38Å | 1.39Å | Aromatic |
| N8 | N9 | sing | 1.41Å | 1.36Å | Aromatic |
| N1 | C2 | sing | 1.37Å | 1.34Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C4 | N9 | sing | 1.35Å | 1.36Å | Aromatic |
| C4 | N3 | sing | 1.36Å | 1.37Å | |
| N9 | C1' | sing | 1.46Å | 1.46Å | |
| C2 | N3 | doub | 1.31Å | 1.32Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| OP2 | H1 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C6 | H7 | sing | 1.09Å | 1.10Å | |
| O6 | H8 | sing | 0.97Å | 0.95Å | |
| N1 | H9 | sing | 0.97Å | 1.00Å | |
| C2 | H11 | sing | 1.08Å | 1.08Å | |
| C2' | H14 | sing | 1.09Å | 1.10Å | |
| O2' | H15 | sing | 0.97Å | 0.95Å | |
| C3' | H16 | sing | 1.09Å | 1.10Å | |
| O3' | H17 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| OP3 | H2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 123.1° | 109.4° |
| OP1 | P | O5' | 107.1° | 109.4° |
| OP1 | P | OP3 | 106.7° | 109.5° |
| C5 | N7 | N8 | 110.1° | 110.0° |
| N7 | C5 | C6 | 132.5° | 130.5° |
| N7 | C5 | C4 | 107.5° | 108.9° |
| N7 | N8 | N9 | 106.3° | 108.4° |
| O6 | C6 | C5 | 113.5° | 110.1° |
| O6 | C6 | N1 | 106.8° | 110.1° |
| O6 | C6 | H7 | 110.9° | 110.2° |
| C6 | O6 | H8 | 109.5° | 114.0° |
| OP2 | P | O5' | 105.4° | 109.5° |
| P | OP2 | H1 | 109.5° | 114.0° |
| OP2 | P | OP3 | 109.1° | 109.5° |
| C5 | C6 | N1 | 105.3° | 106.3° |
| C6 | C5 | C4 | 120.0° | 120.6° |
| C5 | C6 | H7 | 109.8° | 110.1° |
| C6 | N1 | C2 | 124.5° | 120.3° |
| N1 | C6 | H7 | 110.4° | 110.1° |
| C6 | N1 | H9 | 117.8° | 119.9° |
| P | O5' | C5' | 120.7° | 123.0° |
| O5' | P | OP3 | 103.9° | 109.5° |
| C5 | C4 | N9 | 105.2° | 106.6° |
| C5 | C4 | N3 | 128.3° | 122.0° |
| N8 | N9 | C4 | 110.8° | 106.1° |
| N8 | N9 | C1' | 124.6° | 126.9° |
| N1 | C2 | N3 | 125.0° | 122.0° |
| C2 | N1 | H9 | 117.8° | 119.8° |
| N1 | C2 | H11 | 117.5° | 118.9° |
| O5' | C5' | C4' | 111.1° | 109.5° |
| O5' | C5' | H3 | 109.1° | 109.5° |
| O5' | C5' | H4 | 109.1° | 109.5° |
| N9 | C4 | N3 | 126.4° | 131.4° |
| C4 | N9 | C1' | 124.6° | 127.0° |
| C4 | N3 | C2 | 111.1° | 118.6° |
| N9 | C1' | O4' | 109.2° | 110.4° |
| N9 | C1' | C2' | 115.6° | 110.4° |
| N9 | C1' | H6 | 108.8° | 110.4° |
| N3 | C2 | H11 | 117.5° | 119.0° |
| C5' | C4' | O4' | 108.8° | 110.4° |
| C5' | C4' | C3' | 115.3° | 110.4° |
| C4' | C5' | H3 | 109.0° | 109.5° |
| C4' | C5' | H4 | 109.0° | 109.5° |
| C5' | C4' | H5 | 108.8° | 110.3° |
| C1' | O4' | C4' | 109.0° | 105.3° |
| O4' | C1' | C2' | 105.7° | 104.8° |
| O4' | C1' | H6 | 109.4° | 110.3° |
| O4' | C4' | C3' | 105.9° | 104.8° |
| O4' | C4' | H5 | 109.5° | 110.5° |
| C1' | C2' | O2' | 111.1° | 110.5° |
| C1' | C2' | C3' | 100.5° | 104.1° |
| C2' | C1' | H6 | 108.0° | 110.4° |
| C1' | C2' | H14 | 109.8° | 110.5° |
| O2' | C2' | C3' | 113.7° | 110.5° |
| O2' | C2' | H14 | 111.4° | 110.5° |
| C2' | O2' | H15 | 109.5° | 114.0° |
| C2' | C3' | C4' | 102.5° | 104.1° |
| C2' | C3' | O3' | 107.4° | 110.5° |
| C3' | C2' | H14 | 109.8° | 110.6° |
| C2' | C3' | H16 | 112.0° | 110.5° |
| C4' | C3' | O3' | 108.8° | 110.6° |
| C3' | C4' | H5 | 108.4° | 110.4° |
| C4' | C3' | H16 | 111.9° | 110.5° |
| O3' | C3' | H16 | 113.6° | 110.5° |
| C3' | O3' | H17 | 109.5° | 114.0° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| P | OP3 | H2 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 122.9° | 120.0° |
| OP1 | P | OP2 | OP3 | 126.1° | 120.0° |
| OP1 | P | O5' | OP3 | 112.7° | 120.0° |
| OP1 | P | O5' | C5' | 147.5° | 55.0° |
| OP1 | P | OP2 | H1 | 0.0° | 180.0° |
| OP1 | P | OP3 | H2 | 0.0° | 60.0° |
| N7 | C5 | C6 | O6 | 75.6° | 83.4° |
| N7 | C5 | C6 | C4 | 179.8° | 179.8° |
| N7 | C5 | C6 | N1 | 168.0° | 157.4° |
| C5 | N7 | N8 | N9 | 0.1° | 0.1° |
| N7 | C5 | C4 | N9 | 0.8° | 0.4° |
| N7 | C5 | C4 | N3 | 179.9° | 179.6° |
| N7 | C5 | C6 | H7 | 49.1° | 38.2° |
| N8 | N7 | C5 | C6 | 179.4° | 180.0° |
| N8 | N7 | C5 | C4 | 0.5° | 0.2° |
| N7 | N8 | N9 | C4 | 0.6° | 0.3° |
| N7 | N8 | N9 | C1' | 179.8° | 180.0° |
| O6 | C6 | C5 | N1 | 116.4° | 119.1° |
| O6 | C6 | C5 | H7 | 124.8° | 121.7° |
| O6 | C6 | N1 | H7 | 120.6° | 121.7° |
| O6 | C6 | C5 | C4 | 104.2° | 96.4° |
| O6 | C6 | N1 | C2 | 94.3° | 82.5° |
| O6 | C6 | N1 | H9 | 85.7° | 97.6° |
| OP2 | P | O5' | OP3 | 114.7° | 120.0° |
| OP2 | P | O5' | C5' | 14.9° | 64.9° |
| OP2 | P | OP3 | H2 | 135.0° | 60.0° |
| C5 | C6 | N1 | H7 | 118.5° | 119.2° |
| C5 | C6 | N1 | C2 | 26.6° | 36.6° |
| C6 | C5 | C4 | N9 | 179.1° | 179.8° |
| C6 | C5 | C4 | N3 | 0.0° | 0.5° |
| C5 | C6 | O6 | H8 | 180.0° | 180.0° |
| C5 | C6 | N1 | H9 | 153.4° | 143.3° |
| N1 | C6 | C5 | C4 | 12.2° | 22.7° |
| C6 | N1 | C2 | H9 | 180.0° | 179.9° |
| C6 | N1 | C2 | N3 | 30.4° | 29.3° |
| N1 | C6 | O6 | H8 | 64.4° | 63.2° |
| C6 | N1 | C2 | H11 | 149.6° | 150.7° |
| P | O5' | C5' | C4' | 138.9° | 180.0° |
| O5' | P | OP2 | H1 | 122.9° | 60.0° |
| P | O5' | C5' | H3 | 100.9° | 60.0° |
| P | O5' | C5' | H4 | 18.7° | 59.9° |
| O5' | P | OP3 | H2 | 113.0° | 180.0° |
| C5 | C4 | N9 | N8 | 0.9° | 0.4° |
| C5 | C4 | N9 | N3 | 179.1° | 179.2° |
| C5 | C4 | N9 | C1' | 179.9° | 179.9° |
| C5 | C4 | N3 | C2 | 1.1° | 11.9° |
| C4 | C5 | C6 | H7 | 131.0° | 141.9° |
| N8 | N9 | C4 | C1' | 179.2° | 179.7° |
| N8 | N9 | C4 | N3 | 180.0° | 179.6° |
| N8 | N9 | C1' | O4' | 55.3° | 43.6° |
| N8 | N9 | C1' | C2' | 63.7° | 71.8° |
| N8 | N9 | C1' | H6 | 174.6° | 165.9° |
| N1 | C2 | N3 | C4 | 13.3° | 2.3° |
| N1 | C2 | N3 | H11 | 180.0° | 180.0° |
| C2 | N1 | C6 | H7 | 145.1° | 155.8° |
| O5' | C5' | C4' | H3 | 120.3° | 120.0° |
| O5' | C5' | C4' | H4 | 120.2° | 120.0° |
| O5' | C5' | C4' | O4' | 63.7° | 69.6° |
| O5' | C5' | C4' | C3' | 55.1° | 175.0° |
| O5' | C5' | H3 | H4 | 119.3° | 120.0° |
| O5' | C5' | C4' | H5 | 177.1° | 52.8° |
| C5' | O5' | P | OP3 | 99.8° | 175.0° |
| N9 | C4 | N3 | C2 | 180.0° | 167.2° |
| C4 | N9 | C1' | O4' | 123.8° | 136.7° |
| C4 | N9 | C1' | C2' | 117.2° | 107.9° |
| C4 | N9 | C1' | H6 | 4.5° | 14.4° |
| N3 | C4 | N9 | C1' | 0.8° | 0.7° |
| C4 | N3 | C2 | H11 | 166.7° | 177.7° |
| N9 | C1' | O4' | C2' | 125.0° | 118.9° |
| N9 | C1' | O4' | H6 | 118.9° | 122.3° |
| N9 | C1' | O4' | C4' | 150.0° | 159.3° |
| N9 | C1' | C2' | H6 | 122.1° | 122.3° |
| N9 | C1' | C2' | O2' | 79.4° | 98.5° |
| N9 | C1' | C2' | C3' | 160.0° | 142.8° |
| N9 | C1' | C2' | H14 | 44.3° | 24.1° |
| N3 | C2 | N1 | H9 | 149.6° | 150.6° |
| C5' | C4' | O4' | C1' | 124.8° | 159.3° |
| C5' | C4' | O4' | C3' | 124.5° | 118.9° |
| C5' | C4' | O4' | H5 | 118.8° | 122.3° |
| C5' | C4' | C3' | C2' | 96.3° | 142.8° |
| C5' | C4' | C3' | H5 | 122.2° | 122.2° |
| C5' | C4' | C3' | O3' | 150.2° | 98.5° |
| C4' | C5' | H3 | H4 | 119.2° | 120.0° |
| C5' | C4' | C3' | H16 | 23.9° | 24.2° |
| O4' | C1' | C2' | H6 | 117.0° | 118.8° |
| O4' | C1' | C2' | O2' | 159.7° | 142.6° |
| O4' | C1' | C2' | C3' | 39.1° | 24.0° |
| C1' | O4' | C4' | C3' | 0.3° | 40.5° |
| C1' | O4' | C4' | H5 | 116.4° | 78.4° |
| O4' | C1' | C2' | H14 | 76.6° | 94.8° |
| C4' | O4' | C1' | C2' | 25.0° | 40.5° |
| O4' | C4' | C3' | C2' | 24.0° | 23.9° |
| O4' | C4' | C3' | H5 | 117.4° | 118.9° |
| O4' | C4' | C3' | O3' | 89.4° | 142.6° |
| O4' | C4' | C5' | H3 | 176.1° | 50.4° |
| O4' | C4' | C5' | H4 | 56.6° | 170.4° |
| C4' | O4' | C1' | H6 | 91.1° | 78.4° |
| O4' | C4' | C3' | H16 | 144.2° | 94.7° |
| C1' | C2' | O2' | C3' | 112.5° | 114.6° |
| C1' | C2' | O2' | H14 | 122.8° | 122.6° |
| C1' | C2' | C3' | H14 | 115.7° | 118.7° |
| C1' | C2' | C3' | C4' | 37.3° | 0.0° |
| C1' | C2' | C3' | O3' | 77.1° | 118.7° |
| C1' | C2' | O2' | H15 | 180.0° | 180.0° |
| C1' | C2' | C3' | H16 | 157.4° | 118.7° |
| O2' | C2' | C3' | H14 | 125.5° | 122.6° |
| O2' | C2' | C3' | C4' | 156.1° | 118.7° |
| O2' | C2' | C3' | O3' | 41.6° | 0.0° |
| O2' | C2' | C1' | H6 | 42.7° | 23.8° |
| O2' | C2' | C3' | H16 | 83.8° | 122.7° |
| C2' | C3' | C4' | O3' | 113.5° | 118.7° |
| C2' | C3' | C4' | H16 | 120.2° | 118.6° |
| C2' | C3' | O3' | H16 | 124.5° | 122.6° |
| C2' | C3' | C4' | H5 | 141.5° | 95.0° |
| C3' | C2' | C1' | H6 | 77.9° | 94.8° |
| C3' | C2' | O2' | H15 | 67.4° | 65.4° |
| C2' | C3' | O3' | H17 | 180.0° | 65.3° |
| C4' | C3' | O3' | H16 | 125.3° | 122.7° |
| C3' | C4' | C5' | H3 | 65.2° | 65.0° |
| C3' | C4' | C5' | H4 | 175.3° | 55.0° |
| C4' | C3' | C2' | H14 | 78.4° | 118.7° |
| C4' | C3' | O3' | H17 | 69.8° | 180.0° |
| O3' | C3' | C4' | H5 | 28.0° | 23.7° |
| O3' | C3' | C2' | H14 | 167.2° | 122.6° |
| H1 | OP2 | P | OP3 | 126.0° | 60.0° |
| H3 | C5' | C4' | H5 | 56.8° | 172.8° |
| H4 | C5' | C4' | H5 | 62.7° | 67.2° |
| H5 | C4' | C3' | H16 | 98.3° | 146.4° |
| H6 | C1' | C2' | H14 | 166.4° | 146.4° |
| H7 | C6 | O6 | H8 | 55.8° | 58.4° |
| H7 | C6 | N1 | H9 | 34.9° | 24.1° |
| H9 | N1 | C2 | H11 | 30.4° | 29.4° |
| H14 | C2' | O2' | H15 | 57.2° | 57.3° |
| H14 | C2' | C3' | H16 | 41.7° | 0.1° |
| H16 | C3' | O3' | H17 | 55.5° | 57.3° |
