8AN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3P | P | doub | 1.48Å | 1.59Å | |
O2P | P | sing | 1.61Å | 1.47Å | |
P | O1P | sing | 1.61Å | 1.45Å | |
P | O5' | sing | 1.61Å | 1.57Å | |
O1P | HO1P | sing | 0.97Å | 0.95Å | |
O2P | HO2P | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.40Å | |
C4' | C5' | sing | 1.53Å | 1.45Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
O4' | C4' | sing | 1.44Å | 1.40Å | |
C4' | C3' | sing | 1.54Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.40Å | |
C1' | C2' | sing | 1.54Å | 1.53Å | |
C1' | N9 | sing | 1.47Å | 1.48Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C4 | N9 | sing | 1.37Å | 1.38Å | Aromatic |
N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
N3 | C4 | doub | 1.33Å | 1.34Å | Aromatic |
C4 | C5 | sing | 1.41Å | 1.39Å | Aromatic |
N3 | C2 | sing | 1.32Å | 1.32Å | Aromatic |
C2 | N1 | doub | 1.32Å | 1.34Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.08Å | |
N1 | C6 | sing | 1.33Å | 1.35Å | Aromatic |
C5 | C6 | doub | 1.40Å | 1.40Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.33Å | |
N6 | HN6 | sing | 0.97Å | 1.00Å | |
N6 | HN6A | sing | 0.97Å | 1.00Å | |
C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
O2' | C2' | sing | 1.43Å | 1.40Å | |
C2' | C3' | sing | 1.55Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
N3' | C3' | sing | 1.47Å | 1.43Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
N3' | HN3' | sing | 1.01Å | 1.00Å | |
N3' | HN3A | sing | 1.01Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3P | P | O2P | 112.3° | 109.5° |
O3P | P | O1P | 102.5° | 109.5° |
O3P | P | O5' | 101.8° | 109.4° |
O2P | P | O1P | 120.4° | 109.5° |
O2P | P | O5' | 107.9° | 109.5° |
P | O2P | HO2P | 109.5° | 114.0° |
O1P | P | O5' | 110.4° | 109.5° |
P | O1P | HO1P | 109.5° | 114.1° |
P | O5' | C5' | 121.0° | 123.0° |
O5' | C5' | C4' | 117.0° | 109.5° |
O5' | C5' | H5' | 107.1° | 109.5° |
O5' | C5' | H5'A | 105.3° | 109.4° |
C4' | C5' | H5' | 107.0° | 109.5° |
C4' | C5' | H5'A | 105.3° | 109.5° |
C5' | C4' | O4' | 113.6° | 110.4° |
C5' | C4' | C3' | 114.3° | 110.3° |
C5' | C4' | H4' | 102.8° | 110.3° |
H5' | C5' | H5'A | 115.6° | 109.4° |
O4' | C4' | C3' | 109.2° | 104.8° |
O4' | C4' | H4' | 108.7° | 110.5° |
C4' | O4' | C1' | 109.7° | 105.3° |
C3' | C4' | H4' | 107.8° | 110.4° |
C4' | C3' | C2' | 104.2° | 104.0° |
C4' | C3' | N3' | 100.3° | 110.5° |
C4' | C3' | H3' | 119.6° | 110.5° |
O4' | C1' | C2' | 109.3° | 104.8° |
O4' | C1' | N9 | 108.0° | 110.4° |
O4' | C1' | H1' | 114.9° | 110.3° |
C2' | C1' | N9 | 119.5° | 110.4° |
C2' | C1' | H1' | 101.9° | 110.4° |
C1' | C2' | O2' | 106.7° | 110.5° |
C1' | C2' | C3' | 102.4° | 104.1° |
C1' | C2' | H2' | 120.5° | 110.5° |
N9 | C1' | H1' | 103.4° | 110.4° |
C1' | N9 | C4 | 128.5° | 126.3° |
C1' | N9 | C8 | 126.5° | 126.3° |
C4 | N9 | C8 | 105.1° | 107.5° |
N9 | C4 | N3 | 127.2° | 135.0° |
N9 | C4 | C5 | 106.1° | 106.0° |
N9 | C8 | N7 | 114.3° | 110.0° |
N9 | C8 | H8 | 122.8° | 125.0° |
N3 | C4 | C5 | 126.7° | 119.0° |
C4 | N3 | C2 | 110.6° | 120.7° |
C4 | C5 | C6 | 117.0° | 118.2° |
C4 | C5 | N7 | 110.8° | 107.2° |
N3 | C2 | N1 | 129.4° | 122.4° |
N3 | C2 | H2 | 115.3° | 118.7° |
N1 | C2 | H2 | 115.3° | 118.8° |
C2 | N1 | C6 | 118.7° | 121.2° |
N1 | C6 | C5 | 117.5° | 118.5° |
N1 | C6 | N6 | 119.0° | 120.7° |
C5 | C6 | N6 | 123.4° | 120.8° |
C6 | C5 | N7 | 132.3° | 134.6° |
C6 | N6 | HN6 | 109.5° | 120.1° |
C6 | N6 | HN6A | 109.5° | 119.9° |
HN6 | N6 | HN6A | 109.4° | 120.0° |
C5 | N7 | C8 | 103.7° | 109.4° |
N7 | C8 | H8 | 122.8° | 125.0° |
O2' | C2' | C3' | 121.2° | 110.5° |
O2' | C2' | H2' | 101.4° | 110.6° |
C2' | O2' | HO2' | 109.5° | 114.0° |
C3' | C2' | H2' | 105.8° | 110.5° |
C2' | C3' | N3' | 113.4° | 110.5° |
C2' | C3' | H3' | 107.9° | 110.6° |
N3' | C3' | H3' | 111.4° | 110.6° |
C3' | N3' | HN3' | 109.5° | 111.0° |
C3' | N3' | HN3A | 109.5° | 111.0° |
HN3' | N3' | HN3A | 109.4° | 110.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3P | P | O2P | O1P | 120.8° | 120.0° |
O3P | P | O2P | O5' | 111.4° | 120.0° |
O3P | P | O1P | O5' | 107.8° | 120.0° |
O3P | P | O1P | HO1P | 53.4° | 60.0° |
O3P | P | O2P | HO2P | 153.9° | 180.0° |
O3P | P | O5' | C5' | 102.0° | 55.0° |
O2P | P | O1P | O5' | 126.7° | 120.0° |
O2P | P | O1P | HO1P | 72.1° | 60.0° |
O2P | P | O5' | C5' | 16.4° | 65.0° |
O1P | P | O2P | HO2P | 85.3° | 60.0° |
O1P | P | O5' | C5' | 149.8° | 175.0° |
O5' | P | O1P | HO1P | 161.2° | 180.0° |
O5' | P | O2P | HO2P | 42.5° | 60.0° |
P | O5' | C5' | C4' | 76.2° | 180.0° |
P | O5' | C5' | H5' | 163.8° | 60.0° |
P | O5' | C5' | H5'A | 40.3° | 60.0° |
O5' | C5' | C4' | H5' | 120.0° | 120.0° |
O5' | C5' | C4' | H5'A | 116.5° | 120.0° |
O5' | C5' | H5' | H5'A | 116.9° | 120.0° |
O5' | C5' | C4' | O4' | 29.0° | 69.6° |
O5' | C5' | C4' | C3' | 155.2° | 175.0° |
O5' | C5' | C4' | H4' | 88.2° | 52.8° |
C4' | C5' | H5' | H5'A | 116.9° | 120.0° |
C5' | C4' | O4' | C3' | 128.9° | 118.8° |
C5' | C4' | O4' | H4' | 113.8° | 122.3° |
C5' | C4' | C3' | H4' | 113.6° | 122.2° |
C5' | C4' | O4' | C1' | 132.9° | 159.3° |
C5' | C4' | C3' | C2' | 145.4° | 142.9° |
C5' | C4' | C3' | N3' | 97.1° | 98.6° |
C5' | C4' | C3' | H3' | 24.9° | 24.2° |
H5' | C5' | C4' | O4' | 91.0° | 50.4° |
H5' | C5' | C4' | C3' | 35.2° | 65.0° |
H5' | C5' | C4' | H4' | 151.8° | 172.8° |
H5'A | C5' | C4' | O4' | 145.5° | 170.4° |
H5'A | C5' | C4' | C3' | 88.3° | 55.0° |
H5'A | C5' | C4' | H4' | 28.3° | 67.2° |
O4' | C4' | C3' | H4' | 117.9° | 119.0° |
C4' | O4' | C1' | C2' | 10.9° | 40.5° |
C4' | O4' | C1' | N9 | 120.5° | 159.3° |
C4' | O4' | C1' | H1' | 124.7° | 78.4° |
O4' | C4' | C3' | C2' | 17.0° | 24.0° |
O4' | C4' | C3' | N3' | 134.5° | 142.6° |
O4' | C4' | C3' | H3' | 103.6° | 94.7° |
C3' | C4' | O4' | C1' | 4.0° | 40.5° |
C4' | C3' | C2' | C1' | 21.9° | 0.0° |
C4' | C3' | C2' | O2' | 96.7° | 118.7° |
C4' | C3' | C2' | N3' | 108.1° | 118.6° |
C4' | C3' | C2' | H3' | 128.1° | 118.7° |
C4' | C3' | C2' | H2' | 148.9° | 118.7° |
C4' | C3' | N3' | H3' | 127.6° | 122.7° |
C4' | C3' | N3' | HN3' | 121.9° | 180.0° |
C4' | C3' | N3' | HN3A | 1.9° | 56.2° |
H4' | C4' | O4' | C1' | 113.4° | 78.4° |
H4' | C4' | C3' | C2' | 100.9° | 95.0° |
H4' | C4' | C3' | N3' | 16.6° | 23.6° |
H4' | C4' | C3' | H3' | 138.5° | 146.3° |
O4' | C1' | C2' | N9 | 125.0° | 118.8° |
O4' | C1' | C2' | H1' | 122.0° | 118.8° |
O4' | C1' | N9 | H1' | 122.2° | 122.2° |
O4' | C1' | N9 | C4 | 133.5° | 156.1° |
O4' | C1' | N9 | C8 | 46.4° | 23.5° |
O4' | C1' | C2' | O2' | 107.6° | 142.6° |
O4' | C1' | C2' | C3' | 20.8° | 23.9° |
O4' | C1' | C2' | H2' | 137.8° | 94.7° |
C2' | C1' | N9 | H1' | 112.3° | 122.4° |
C2' | C1' | N9 | C4 | 100.9° | 88.5° |
C2' | C1' | N9 | C8 | 79.1° | 91.9° |
C1' | C2' | O2' | C3' | 116.4° | 114.7° |
C1' | C2' | O2' | H2' | 127.0° | 122.7° |
C1' | C2' | C3' | H2' | 127.1° | 118.6° |
C1' | C2' | O2' | HO2' | 132.9° | 61.4° |
C1' | C2' | C3' | N3' | 129.9° | 118.6° |
C1' | C2' | C3' | H3' | 106.2° | 118.7° |
C1' | N9 | C4 | C8 | 179.9° | 179.7° |
C1' | N9 | C4 | N3 | 1.2° | 0.1° |
C1' | N9 | C4 | C5 | 178.5° | 179.9° |
C1' | N9 | C8 | N7 | 178.9° | 179.9° |
C1' | N9 | C8 | H8 | 1.1° | 0.0° |
N9 | C1' | C2' | O2' | 127.5° | 98.5° |
N9 | C1' | C2' | C3' | 104.2° | 142.8° |
N9 | C1' | C2' | H2' | 12.8° | 24.2° |
H1' | C1' | N9 | C4 | 11.3° | 33.9° |
H1' | C1' | N9 | C8 | 168.6° | 145.8° |
H1' | C1' | C2' | O2' | 14.4° | 23.8° |
H1' | C1' | C2' | C3' | 142.8° | 94.9° |
H1' | C1' | C2' | H2' | 100.3° | 146.5° |
N9 | C4 | N3 | C5 | 179.6° | 180.0° |
N9 | C4 | N3 | C2 | 178.6° | 180.0° |
N9 | C4 | C5 | C6 | 178.4° | 179.9° |
N9 | C4 | C5 | N7 | 1.5° | 0.0° |
C4 | N9 | C8 | N7 | 1.2° | 0.4° |
C4 | N9 | C8 | H8 | 178.9° | 179.7° |
C8 | N9 | C4 | N3 | 178.8° | 179.8° |
C8 | N9 | C4 | C5 | 1.6° | 0.2° |
N9 | C8 | N7 | C5 | 0.2° | 0.4° |
N9 | C8 | N7 | H8 | 180.0° | 179.9° |
C4 | N3 | C2 | N1 | 0.1° | 0.1° |
C4 | N3 | C2 | H2 | 179.9° | 180.0° |
N3 | C4 | C5 | C6 | 1.2° | 0.0° |
N3 | C4 | C5 | N7 | 178.8° | 180.0° |
C5 | C4 | N3 | C2 | 1.0° | 0.0° |
C4 | C5 | C6 | N1 | 0.5° | 0.1° |
C4 | C5 | C6 | N7 | 180.0° | 179.9° |
C4 | C5 | C6 | N6 | 179.3° | 180.0° |
C4 | C5 | N7 | C8 | 0.8° | 0.3° |
N3 | C2 | N1 | H2 | 180.0° | 180.0° |
N3 | C2 | N1 | C6 | 0.4° | 0.0° |
C2 | N1 | C6 | C5 | 0.2° | 0.0° |
C2 | N1 | C6 | N6 | 180.0° | 180.0° |
H2 | C2 | N1 | C6 | 179.6° | 180.0° |
N1 | C6 | C5 | N6 | 179.8° | 179.9° |
N1 | C6 | N6 | HN6 | 37.6° | 0.1° |
N1 | C6 | N6 | HN6A | 157.6° | 180.0° |
N1 | C6 | C5 | N7 | 179.5° | 180.0° |
C5 | C6 | N6 | HN6 | 142.6° | 180.0° |
C5 | C6 | N6 | HN6A | 22.6° | 0.1° |
C6 | C5 | N7 | C8 | 179.2° | 179.8° |
C6 | N6 | HN6 | HN6A | 120.0° | 179.9° |
N6 | C6 | C5 | N7 | 0.7° | 0.1° |
C5 | N7 | C8 | H8 | 179.8° | 179.7° |
O2' | C2' | C3' | H2' | 114.4° | 122.7° |
O2' | C2' | C3' | N3' | 11.4° | 0.1° |
O2' | C2' | C3' | H3' | 135.2° | 122.7° |
C3' | C2' | O2' | HO2' | 110.7° | 176.1° |
C2' | C3' | N3' | H3' | 121.9° | 122.7° |
C2' | C3' | N3' | HN3' | 127.6° | 65.4° |
C2' | C3' | N3' | HN3A | 112.4° | 170.7° |
H2' | C2' | O2' | HO2' | 5.9° | 61.3° |
H2' | C2' | C3' | N3' | 103.0° | 122.7° |
H2' | C2' | C3' | H3' | 20.8° | 0.0° |
C3' | N3' | HN3' | HN3A | 120.0° | 123.9° |
H3' | C3' | N3' | HN3' | 5.7° | 57.3° |
H3' | C3' | N3' | HN3A | 125.7° | 66.6° |