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8AG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO2Pdoub1.48Å1.50Å
PO1Psing1.61Å1.51Å
PO5'sing1.61Å1.61Å
PO3Psing1.61Å48.85Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.53Å
C4'O4'sing1.44Å1.42Å
C4'C3'sing1.55Å1.51Å
O4'C1'sing1.44Å1.42Å
C3'O3'sing1.43Å1.42Å
C3'C2'sing1.55Å1.51Å
O3'H3Asing0.97Å0.95Å
C2'C1'sing1.54Å1.51Å
C1'N9sing1.47Å1.47Å
N9C4sing1.39Å1.33Å
N9C8sing1.47Å1.33Å
C4N3sing1.34Å1.35Å
C4C5doub1.39Å1.38Å
N3C2doub1.31Å1.34Å
C2N2sing1.37Å1.47Å
C2N1sing1.36Å1.34Å
N1C6sing1.35Å1.33Å
C6O6doub1.22Å1.35Å
C6C5sing1.40Å1.47Å
C5N7sing1.41Å1.35Å
N7C8sing1.47Å1.33Å
C8N29sing1.46Å1.47Å
N29C30sing1.35Å1.38Å
N29C32sing1.40Å1.43Å
C30C45sing1.51Å1.50Å
C30O44doub1.21Å1.22Å
C32C31sing1.40Å1.39ÅAromatic
C32C33doub1.36Å1.38ÅAromatic
C31C36doub1.36Å1.39ÅAromatic
C36C35sing1.41Å1.38ÅAromatic
C35C34sing1.47Å1.47ÅAromatic
C35C1doub1.39Å1.39ÅAromatic
C34C33sing1.41Å1.37ÅAromatic
C34C37doub1.39Å1.38ÅAromatic
C1C39sing1.39Å1.39ÅAromatic
C39C38doub1.47Å1.38ÅAromatic
C39C43sing1.41Å1.38ÅAromatic
C38C37sing1.39Å1.38ÅAromatic
C38C40sing1.41Å1.38ÅAromatic
C40C41doub1.36Å1.38ÅAromatic
C43C42doub1.36Å1.38ÅAromatic
C42C41sing1.40Å1.38ÅAromatic
O1PH1Psing0.97Å0.95Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
C2'H2'1sing1.09Å1.10Å
C2'H2'2sing1.09Å1.10Å
N2H21Nsing0.97Å1.00Å
N2H22Nsing0.97Å1.00Å
N1H1sing0.97Å1.00Å
N7H7sing0.97Å1.00Å
C45H451sing1.09Å1.10Å
C45H452sing1.09Å1.10Å
C45H453sing1.09Å1.10Å
C31H31sing1.08Å1.08Å
C33H33sing1.08Å1.08Å
C36H36sing1.08Å1.08Å
C1HAsing1.08Å1.08Å
C37H37sing1.08Å1.08Å
C43H43sing1.08Å1.08Å
C40H40sing1.08Å1.08Å
C42H42sing1.08Å1.08Å
C41H41sing1.08Å1.08Å
C8H88sing1.09Å1.10Å
O3PH3Psing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2PPO1P118.4°109.5°
O2PPO5'107.8°109.5°
O2PPO3P35.3°109.5°
O1PPO5'108.6°109.5°
O1PPO3P149.4°109.5°
PO1PH1P109.5°114.0°
O5'PO3P78.3°109.4°
PO5'C5'119.6°123.0°
PO3PH3P90.0°114.0°
O5'C5'C4'113.6°109.5°
O5'C5'H5'1108.1°109.4°
O5'C5'H5'2107.2°109.5°
C5'C4'O4'115.0°110.6°
C5'C4'C3'115.5°110.6°
C4'C5'H5'1108.1°109.4°
C4'C5'H5'2107.2°109.5°
C5'C4'H4'99.9°110.5°
O4'C4'C3'106.3°103.5°
C4'O4'C1'109.5°107.0°
O4'C4'H4'110.3°110.7°
C4'C3'O3'103.3°110.9°
C4'C3'C2'103.7°102.1°
C3'C4'H4'109.7°110.7°
C4'C3'H3'115.9°110.9°
O4'C1'C2'104.1°107.3°
O4'C1'N9105.8°109.9°
O4'C1'H1'115.7°109.9°
O3'C3'C2'106.6°110.9°
C3'O3'H3A109.5°114.0°
O3'C3'H3'113.3°110.8°
C3'C2'C1'100.9°104.2°
C2'C3'H3'113.0°110.9°
C3'C2'H2'1112.5°110.5°
C3'C2'H2'2114.2°110.5°
C2'C1'N9111.2°109.8°
C2'C1'H1'110.7°109.9°
C1'C2'H2'1112.4°110.5°
C1'C2'H2'2114.3°110.5°
C1'N9C4126.0°126.1°
C1'N9C8128.6°126.1°
N9C1'H1'109.1°110.0°
C4N9C8105.3°107.8°
N9C4N3132.3°130.6°
N9C4C5107.9°110.1°
N9C8N7114.2°105.6°
N9C8N29127.8°110.2°
N9C8H8880.2°110.2°
N3C4C5119.8°119.4°
C4N3C2121.1°121.3°
C4C5C6117.5°119.0°
C4C5N7109.1°109.9°
N3C2N2119.4°119.2°
N3C2N1122.1°121.5°
N2C2N1118.5°119.2°
C2N2H21N108.6°120.0°
C2N2H22N125.7°120.0°
C2N1C6120.9°120.0°
C2N1H1119.5°120.0°
N1C6O6120.4°120.5°
N1C6C5118.6°118.8°
C6N1H1119.6°120.0°
O6C6C5121.0°120.7°
C6C5N7133.4°131.2°
C5N7C8103.5°106.6°
C5N7H7111.5°126.7°
N7C8N29117.9°110.1°
C8N7H7111.5°126.7°
N7C8H88154.6°110.3°
C8N29C30120.4°120.0°
C8N29C32117.6°120.0°
N29C8H8853.3°110.3°
C30N29C32121.7°119.9°
N29C30C45117.7°120.0°
N29C30O44120.7°120.0°
N29C32C31122.9°119.3°
N29C32C33116.3°119.2°
C45C30O44121.6°120.0°
C30C45H451109.5°109.5°
C30C45H452109.5°109.5°
C30C45H453109.4°109.5°
C31C32C33120.2°121.5°
C32C31C36121.3°121.7°
C32C31H31119.3°119.1°
C32C33C34120.5°119.5°
C32C33H33119.8°120.2°
C31C36C35119.9°119.6°
C36C31H31119.4°119.1°
C31C36H36120.0°120.2°
C36C35C34118.5°118.8°
C36C35C1122.8°121.0°
C35C36H36120.0°120.2°
C34C35C1118.6°120.2°
C35C34C33119.4°118.8°
C35C34C37119.7°120.2°
C35C1C39119.4°119.6°
C35C1HA120.3°120.2°
C33C34C37121.0°121.0°
C34C33H33119.7°120.3°
C34C37C38119.7°119.6°
C34C37H37120.1°120.2°
C1C39C38121.4°120.2°
C1C39C43119.7°121.1°
C39C1HA120.3°120.2°
C38C39C43118.9°118.7°
C39C38C37121.1°120.2°
C39C38C40120.2°118.7°
C39C43C42120.9°119.5°
C39C43H43119.5°120.2°
C37C38C40118.6°121.1°
C38C37H37120.2°120.2°
C38C40C41121.0°119.6°
C38C40H40119.5°120.2°
C40C41C42118.8°121.7°
C41C40H40119.5°120.2°
C40C41H41120.6°119.2°
C43C42C41120.2°121.8°
C42C43H43119.6°120.2°
C43C42H42119.9°119.2°
C41C42H42119.9°119.1°
C42C41H41120.6°119.1°
H5'1C5'H5'2112.8°109.5°
H2'1C2'H2'2103.0°110.5°
H21NN2H22N125.7°120.0°
H451C45H452109.5°109.4°
H451C45H453109.5°109.4°
H452C45H453109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2PPO1PO5'123.2°120.0°
O2PPO1PO3P24.8°120.0°
O2PPO5'O3P19.6°120.0°
O2PPO5'C5'104.4°54.9°
O2PPO1PH1P49.6°60.0°
O2PPO3PH3P90.0°180.0°
O1PPO5'O3P149.0°120.0°
O1PPO5'C5'24.9°175.0°
O1PPO3PH3P90.0°59.9°
PO5'C5'C4'176.5°180.0°
O5'PO1PH1P73.6°180.0°
PO5'C5'H5'163.6°60.0°
PO5'C5'H5'258.3°60.0°
O5'PO3PH3P90.0°60.0°
O3PPO5'C5'124.1°65.0°
O3PPO1PH1P24.8°60.0°
O5'C5'C4'H5'1120.0°119.9°
O5'C5'C4'H5'2118.2°120.0°
O5'C5'C4'O4'35.6°66.5°
O5'C5'C4'C3'88.8°179.5°
O5'C5'H5'1H5'2118.3°120.0°
O5'C5'C4'H4'153.6°56.5°
C5'C4'O4'C3'129.1°118.5°
C5'C4'O4'H4'112.0°122.9°
C5'C4'C3'H4'111.9°122.9°
C5'C4'O4'C1'135.5°158.6°
C5'C4'C3'O3'138.8°86.3°
C5'C4'C3'C2'110.1°155.5°
C4'C5'H5'1H5'2118.3°120.0°
C5'C4'C3'H3'14.2°37.4°
O4'C4'C3'H4'119.2°118.6°
O4'C4'C3'O3'92.4°155.2°
O4'C4'C3'C2'18.7°37.0°
C4'O4'C1'C2'28.8°26.6°
C4'O4'C1'N9146.2°145.9°
O4'C4'C5'H5'1155.6°53.5°
O4'C4'C5'H5'282.6°173.5°
O4'C4'C3'H3'143.1°81.1°
C4'O4'C1'H1'92.9°92.8°
C3'C4'O4'C1'6.3°40.1°
C4'C3'O3'C2'108.9°112.7°
C4'C3'O3'H3'126.2°123.7°
C4'C3'C2'H3'126.2°118.2°
C4'C3'O3'H3A109.1°180.0°
C4'C3'C2'C1'34.6°20.9°
C3'C4'C5'H5'131.2°60.6°
C3'C4'C5'H5'2153.0°59.5°
C4'C3'C2'H2'185.4°139.6°
C4'C3'C2'H2'2157.6°97.8°
O4'C1'C2'C3'38.9°2.1°
O4'C1'C2'N9113.5°119.4°
O4'C1'C2'H1'125.0°119.5°
O4'C1'N9H1'125.2°121.2°
O4'C1'N9C473.1°53.5°
O4'C1'N9C8103.5°126.8°
C1'O4'C4'H4'112.5°78.5°
O4'C1'C2'H2'181.1°116.6°
O4'C1'C2'H2'2162.0°120.8°
O3'C3'C2'H3'125.1°123.6°
O3'C3'C2'C1'74.0°139.1°
O3'C3'C4'H4'26.8°36.6°
O3'C3'C2'H2'1166.0°102.2°
O3'C3'C2'H2'249.0°20.4°
C2'C3'O3'H3A142.0°67.3°
C3'C2'C1'H2'1120.0°118.7°
C3'C2'C1'H2'2123.0°118.7°
C3'C2'C1'N9152.4°121.5°
C2'C3'C4'H4'137.9°81.6°
C3'C2'C1'H1'86.1°117.4°
C3'C2'H2'1H2'2123.5°122.6°
H3AO3'C3'H3'17.0°56.3°
C2'C1'N9H1'122.5°121.0°
C2'C1'N9C439.3°64.3°
C2'C1'N9C8144.1°115.4°
C1'C2'C3'H3'160.8°97.3°
C1'C2'H2'1H2'2123.5°122.6°
C1'N9C4C8177.2°179.7°
C1'N9C4N33.5°0.0°
C1'N9C4C5177.5°180.0°
C1'N9C8N7176.5°179.9°
C1'N9C8N290.2°61.0°
N9C1'C2'H2'132.4°2.8°
N9C1'C2'H2'284.5°119.9°
C1'N9C8H8825.4°60.9°
N9C4N3C5179.0°180.0°
N9C4N3C2179.2°180.0°
N9C4C5C6179.4°180.0°
N9C4C5N71.0°0.0°
C4N9C8N70.6°0.3°
C4N9C8N29176.9°119.3°
C4N9C1'H1'161.8°174.7°
C4N9C8H88157.5°118.8°
C8N9C4N3179.3°179.8°
C8N9C4C50.2°0.2°
N9C8N7C51.1°0.3°
N9C8N7N29176.8°119.0°
N9C8N7H88120.7°119.1°
N9C8N29H8832.0°121.9°
N9C8N29C3081.7°15.0°
N9C8N29C3291.5°165.0°
C8N9C1'H1'21.7°5.6°
N9C8N7H7118.9°179.8°
C4N3C2N2179.7°180.0°
C4N3C2N10.3°0.0°
N3C4C5C60.2°0.0°
N3C4C5N7179.8°180.0°
C5C4N3C20.2°0.0°
C4C5C6N10.1°0.0°
C4C5C6O6180.0°180.0°
C4C5C6N7179.6°180.0°
C4C5N7C81.2°0.2°
C4C5N7H7118.8°180.0°
N3C2N2N1179.9°180.0°
N3C2N1C60.2°0.0°
N3C2N2H21N180.0°0.1°
N3C2N2H22N0.0°180.0°
N3C2N1H1179.8°180.0°
N2C2N1C6179.8°180.0°
C2N2H21NH22N180.0°180.0°
N2C2N1H10.3°0.0°
C2N1C6H1180.0°180.0°
C2N1C6O6179.9°180.0°
C2N1C6C50.1°0.0°
N1C2N2H21N0.0°180.0°
N1C2N2H22N179.9°0.0°
N1C6O6C5179.9°180.0°
N1C6C5N7179.7°180.0°
O6C6C5N70.4°0.0°
O6C6N1H10.1°0.0°
C6C5N7C8179.2°179.8°
C5C6N1H1179.9°180.0°
C6C5N7H760.8°0.1°
C5N7C8H7120.0°179.8°
C5N7C8N29177.9°119.3°
C5N7C8H88119.6°118.8°
N7C8N29H88151.7°121.9°
N7C8N29C3094.5°101.2°
N7C8N29C3292.2°78.8°
C8N29C30C32173.0°180.0°
C8N29C30C45166.3°177.6°
C8N29C30O4413.8°2.4°
C8N29C32C31123.5°88.3°
C8N29C32C3365.1°91.3°
N29C8N7H757.9°60.9°
N29C30C45O44179.9°180.0°
C30N29C32C3149.7°91.7°
C30N29C32C33121.7°88.7°
N29C30C45H45190.7°84.9°
N29C30C45H452149.3°155.1°
N29C30C45H45329.3°35.1°
C30N29C8H88113.8°136.9°
C32N29C30C456.7°2.4°
C32N29C30O44173.3°177.6°
N29C32C31C33171.0°179.6°
N29C32C31C36175.7°179.9°
N29C32C33C34176.3°179.8°
N29C32C31H314.4°0.1°
N29C32C33H333.7°0.2°
C32N29C8H8859.5°43.1°
C30C45H451H452120.0°120.0°
C30C45H451H453120.0°120.0°
C30C45H452H453120.0°120.1°
O44C30C45H45189.4°95.2°
O44C30C45H45230.6°24.8°
O44C30C45H453150.6°144.9°
C32C31C36H31180.0°180.0°
C32C31C36C352.2°0.0°
C31C32C33C344.6°0.6°
C31C32C33H33175.3°179.8°
C32C31C36H36177.8°179.9°
C33C32C31C364.6°0.3°
C32C33C34C352.3°0.5°
C32C33C34H33180.0°179.6°
C32C33C34C37177.6°179.7°
C33C32C31H31175.4°179.7°
C31C36C35H36180.0°179.9°
C31C36C35C340.1°0.1°
C31C36C35C1179.9°180.0°
C36C35C34C1180.0°179.9°
C36C35C34C330.0°0.2°
C36C35C34C37179.9°180.0°
C36C35C1C39179.9°180.0°
C35C36C31H31177.8°179.9°
C36C35C1HA0.1°0.1°
C35C34C33C37179.9°179.8°
C34C35C1C390.1°0.1°
C35C34C37C380.1°0.0°
C35C34C33H33177.7°179.8°
C34C35C36H36179.9°180.0°
C34C35C1HA179.9°180.0°
C35C34C37H37179.9°179.9°
C1C35C34C33180.0°179.8°
C1C35C34C370.1°0.1°
C35C1C39HA180.0°179.9°
C35C1C39C380.3°0.0°
C35C1C39C43179.7°180.0°
C1C35C36H360.1°0.1°
C33C34C37C38180.0°179.8°
C33C34C37H370.0°0.2°
C34C37C38C390.1°0.0°
C34C37C38H37180.0°180.0°
C34C37C38C40179.3°180.0°
C37C34C33H332.5°0.0°
C1C39C38C43180.0°180.0°
C1C39C38C370.3°0.0°
C1C39C38C40179.5°180.0°
C1C39C43C42179.8°180.0°
C1C39C43H430.2°0.0°
C39C38C37C40179.3°180.0°
C39C38C40C410.5°0.0°
C38C39C43C420.2°0.0°
C38C39C1HA179.7°180.0°
C39C38C37H37179.9°180.0°
C38C39C43H43179.8°180.0°
C39C38C40H40179.5°180.0°
C43C39C38C37179.7°180.0°
C43C39C38C400.5°0.0°
C39C43C42H43180.0°180.0°
C39C43C42C410.0°0.0°
C43C39C1HA0.3°0.0°
C39C43C42H42180.0°180.0°
C37C38C40C41179.8°180.0°
C37C38C40H400.2°0.0°
C38C40C41H40180.0°179.9°
C38C40C41C420.3°0.1°
C40C38C37H370.7°0.0°
C38C40C41H41179.6°180.0°
C40C41C42C430.1°0.1°
C40C41C42H41180.0°180.0°
C40C41C42H42179.9°180.0°
C43C42C41H42180.0°179.9°
C43C42C41H41179.9°180.0°
C41C42C43H43180.0°180.0°
C42C41C40H40179.7°180.0°
H5'1C5'C4'H4'86.4°176.4°
H5'2C5'C4'H4'35.4°63.5°
H4'C4'C3'H3'97.7°160.3°
H3'C3'C2'H2'140.8°21.4°
H3'C3'C2'H2'276.1°144.0°
H1'C1'C2'H2'1154.0°123.9°
H1'C1'C2'H2'237.0°1.3°
H7N7C8H88120.4°61.0°
H451C45H452H453120.0°119.9°
H31C31C36H362.2°0.1°
H43C43C42H420.0°0.0°
H40C40C41H410.4°0.0°
H42C42C41H410.1°0.0°

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PDB entries from 2024-07-17

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