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Summary Geometry Related PDB entries

89Y

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5	C5	sing	1.43Å	1.44Å
C5	C3	sing	1.53Å	1.53Å
C3	C4	sing	1.54Å	1.54Å
C3	O3	sing	1.43Å	1.43Å
C3	C2	sing	1.55Å	1.54Å
C4	O4	sing	1.46Å	1.44Å
C2	O2	sing	1.43Å	1.43Å
C2	C1	sing	1.51Å	1.49Å
O4	C1	sing	1.34Å	1.45Å
C1	O1	doub	1.21Å	1.22Å
O2	H1	sing	0.97Å	0.95Å
C2	H2	sing	1.09Å	1.10Å
C4	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
O3	H5	sing	0.97Å	0.95Å
C5	H6	sing	1.09Å	1.10Å
C5	H7	sing	1.09Å	1.10Å
O5	H8	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5	C5	C3	114.0°	109.5°
O5	C5	H6	108.4°	109.5°
O5	C5	H7	108.3°	109.5°
C5	O5	H8	109.5°	114.0°
C5	C3	C4	115.3°	110.9°
C5	C3	O3	107.8°	110.7°
C5	C3	C2	112.6°	111.0°
C3	C5	H6	108.3°	109.5°
C3	C5	H7	108.3°	109.4°
C4	C3	O3	104.2°	110.9°
C4	C3	C2	105.8°	102.2°
C3	C4	O4	104.5°	104.4°
C3	C4	H3	110.7°	110.4°
C3	C4	H4	110.7°	110.6°
O3	C3	C2	110.8°	110.9°
C3	O3	H5	109.5°	114.0°
C3	C2	O2	113.5°	110.4°
C3	C2	C1	101.8°	104.8°
C3	C2	H2	108.8°	110.4°
C4	O4	C1	108.9°	109.9°
O4	C4	H3	110.7°	110.4°
O4	C4	H4	110.7°	110.4°
O2	C2	C1	112.5°	110.4°
C2	O2	H1	109.5°	114.0°
O2	C2	H2	110.3°	110.4°
C2	C1	O4	111.1°	109.8°
C2	C1	O1	124.1°	125.1°
C1	C2	H2	109.5°	110.4°
O4	C1	O1	124.8°	125.1°
H3	C4	H4	109.5°	110.4°
H6	C5	H7	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5	C5	C3	H6	120.7°	120.0°
O5	C5	C3	H7	120.7°	120.0°
O5	C5	C3	C4	88.9°	61.4°
O5	C5	C3	O3	155.1°	62.1°
O5	C5	C3	C2	32.6°	174.3°
O5	C5	H6	H7	118.0°	120.0°
C5	C3	C4	O3	118.0°	123.4°
C5	C3	C4	C2	125.1°	118.4°
C5	C3	O3	C2	123.6°	123.7°
C5	C3	C4	O4	153.3°	145.2°
C5	C3	C2	O2	86.7°	107.5°
C5	C3	C2	C1	152.1°	133.6°
C5	C3	C2	H2	36.5°	14.8°
C5	C3	C4	H3	87.5°	26.5°
C5	C3	C4	H4	34.1°	96.0°
C5	C3	O3	H5	180.0°	62.1°
C3	C5	H6	H7	117.9°	120.0°
C3	C5	O5	H8	180.0°	180.0°
C4	C3	O3	C2	113.4°	112.8°
C3	C4	O4	H3	119.2°	118.7°
C3	C4	O4	H4	119.2°	118.9°
C4	C3	C2	O2	146.5°	134.2°
C4	C3	C2	C1	25.3°	15.3°
C3	C4	O4	C1	19.5°	30.6°
C4	C3	C2	H2	90.3°	103.5°
C3	C4	H3	H4	122.3°	122.6°
C4	C3	O3	H5	56.9°	61.4°
C4	C3	C5	H6	150.4°	178.5°
C4	C3	C5	H7	31.7°	58.5°
O3	C3	C4	O4	88.7°	91.4°
O3	C3	C2	O2	34.1°	16.0°
O3	C3	C2	C1	87.1°	102.9°
O3	C3	C2	H2	157.3°	138.3°
O3	C3	C4	H3	30.5°	149.9°
O3	C3	C4	H4	152.1°	27.5°
O3	C3	C5	H6	34.4°	57.9°
O3	C3	C5	H7	84.3°	178.0°
C2	C3	C4	O4	28.1°	26.8°
C3	C2	O2	C1	115.0°	115.4°
C3	C2	O2	H2	122.4°	122.3°
C3	C2	C1	H2	115.1°	118.9°
C3	C2	C1	O4	14.0°	2.3°
C3	C2	C1	O1	166.6°	177.7°
C3	C2	O2	H1	132.3°	176.8°
C2	C3	C4	H3	147.3°	91.9°
C2	C3	C4	H4	91.1°	145.6°
C2	C3	O3	H5	56.4°	174.2°
C2	C3	C5	H6	88.1°	65.7°
C2	C3	C5	H7	153.3°	54.4°
C4	O4	C1	C2	3.5°	20.8°
C4	O4	C1	O1	175.9°	159.2°
O4	C4	H3	H4	122.3°	122.4°
O2	C2	C1	H2	123.1°	122.3°
O2	C2	C1	O4	135.9°	116.5°
O2	C2	C1	O1	44.8°	63.5°
C2	C1	O4	O1	179.3°	180.0°
C1	C2	O2	H1	17.3°	61.4°
O4	C1	C2	H2	101.1°	121.2°
C1	O4	C4	H3	138.8°	88.1°
C1	O4	C4	H4	99.7°	149.5°
O1	C1	C2	H2	78.3°	58.8°
H1	O2	C2	H2	105.3°	60.9°
H6	C5	O5	H8	59.3°	60.0°
H7	C5	O5	H8	59.4°	60.0°

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