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87Z

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4C4doub1.22Å1.23Å
C4N3sing1.35Å1.34Å
C4C5sing1.42Å1.40Å
N3C2sing1.35Å1.33Å
C5MC5sing1.51Å1.57Å
C5C6doub1.35Å1.39Å
C2O2doub1.22Å1.18Å
C2N1sing1.35Å1.39Å
C6N1sing1.37Å1.38Å
N1C1'sing1.46Å1.49Å
C2'C1'sing1.54Å1.54Å
C2'C3'sing1.55Å1.53Å
C1'O4'sing1.44Å1.42Å
C3'O3'sing1.43Å1.44Å
C3'C4'sing1.55Å1.49Å
O4'C4'sing1.44Å1.42Å
C4'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.45Å
O5'PAsing1.61Å1.62Å
C3MC3sing1.51Å1.53Å
O2QC2Qsing1.43Å1.43Å
O2APAdoub1.48Å1.52Å
PAO3Asing1.61Å1.62Å
PAO1Asing1.61Å1.52Å
O3APBsing1.61Å1.65Å
O2BPBdoub1.48Å1.53Å
C3O3doub1.21Å1.18Å
C3N3Qsing1.35Å1.33Å
C2QC1Qsing1.53Å1.48Å
C2QC3Qsing1.53Å1.54Å
N3QC3Qsing1.46Å1.46Å
PBO3Bsing1.61Å1.63Å
PBO1Bsing1.61Å1.54Å
O3BC1Qsing1.43Å1.43Å
C1QO5Qsing1.43Å1.41Å
C3QC4Qsing1.53Å1.53Å
O5QC5Qsing1.43Å1.45Å
C4QO4Qsing1.43Å1.44Å
C4QC5Qsing1.53Å1.52Å
C5QC6Qsing1.53Å1.53Å
C3MH1sing1.09Å1.10Å
C3MH2sing1.09Å1.10Å
C3MH3sing1.09Å1.10Å
N3QH4sing0.97Å1.00Å
C3QH5sing1.09Å1.10Å
C4QH6sing1.09Å1.10Å
O4QH7sing0.97Å0.95Å
C2QH8sing1.09Å1.10Å
O2QH9sing0.97Å0.95Å
C1QH10sing1.09Å1.10Å
C5QH11sing1.09Å1.10Å
C6QH12sing1.09Å1.10Å
C6QH13sing1.09Å1.10Å
C6QH14sing1.09Å1.10Å
O1BH15sing0.97Å0.95Å
O1AH16sing0.97Å0.95Å
C5'H17sing1.09Å1.10Å
C5'H18sing1.09Å1.10Å
C4'H19sing1.09Å1.10Å
C3'H20sing1.09Å1.10Å
O3'H21sing0.97Å0.95Å
C2'H22sing1.09Å1.10Å
C2'H23sing1.09Å1.10Å
C1'H24sing1.09Å1.10Å
N3H25sing0.97Å1.00Å
C6H26sing1.08Å1.08Å
C5MH27sing1.09Å1.10Å
C5MH28sing1.09Å1.10Å
C5MH29sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4C4N3118.7°120.4°
O4C4C5121.0°120.3°
N3C4C5120.3°119.3°
C4N3C2122.5°120.3°
C4N3H25118.7°119.8°
C4C5C5M122.6°120.4°
C4C5C6118.3°119.1°
N3C2O2121.7°119.6°
N3C2N1119.3°120.9°
C2N3H25118.8°119.9°
C5MC5C6119.0°120.4°
C5C5MH27109.5°109.5°
C5C5MH28109.4°109.5°
C5C5MH29109.5°109.5°
C5C6N1119.4°119.7°
C5C6H26120.3°120.2°
O2C2N1118.6°119.5°
C2N1C6120.0°120.6°
C2N1C1'118.0°119.7°
C6N1C1'121.9°119.7°
N1C6H26120.3°120.1°
N1C1'C2'109.9°109.9°
N1C1'O4'108.3°109.9°
N1C1'H24111.3°110.0°
C1'C2'C3'101.8°104.2°
C2'C1'O4'104.3°107.2°
C1'C2'H22111.4°110.5°
C1'C2'H23111.4°110.4°
C2'C1'H24110.5°109.9°
C2'C3'O3'107.2°110.9°
C2'C3'C4'102.9°102.1°
C2'C3'H20110.7°110.9°
C3'C2'H22111.3°110.5°
C3'C2'H23111.3°110.5°
C1'O4'C4'113.1°107.0°
O4'C1'H24112.4°109.9°
O3'C3'C4'112.3°110.9°
O3'C3'H20112.1°110.8°
C3'O3'H21109.5°114.0°
C3'C4'O4'102.1°103.6°
C3'C4'C5'110.9°110.6°
C3'C4'H19111.4°110.6°
C4'C3'H20111.3°111.0°
O4'C4'C5'108.6°110.6°
O4'C4'H19112.5°110.6°
C4'C5'O5'102.3°109.5°
C4'C5'H17111.3°109.5°
C4'C5'H18111.3°109.5°
C5'C4'H19110.9°110.6°
C5'O5'PA121.5°123.0°
O5'C5'H17111.2°109.5°
O5'C5'H18111.2°109.5°
O5'PAO2A111.3°109.5°
O5'PAO3A104.2°109.5°
O5'PAO1A106.1°109.4°
C3MC3O3119.7°120.0°
C3MC3N3Q116.1°120.1°
C3C3MH1109.5°109.5°
C3C3MH2109.4°109.5°
C3C3MH3109.5°109.5°
O2QC2QC1Q110.8°109.5°
O2QC2QC3Q109.4°109.5°
O2QC2QH8109.9°109.5°
C2QO2QH9109.5°114.0°
O2APAO3A104.0°109.5°
O2APAO1A118.0°109.5°
O3APAO1A112.5°109.5°
PAO3APB129.4°134.0°
PAO1AH16109.5°114.0°
O3APBO2B107.7°109.5°
O3APBO3B97.7°109.5°
O3APBO1B112.7°109.5°
O2BPBO3B105.5°109.5°
O2BPBO1B118.0°109.4°
O3C3N3Q124.2°119.9°
C3N3QC3Q121.3°120.0°
C3N3QH4119.3°119.9°
C1QC2QC3Q109.3°109.2°
C2QC1QO3B105.6°109.5°
C2QC1QO5Q115.8°109.4°
C1QC2QH8109.1°109.6°
C2QC1QH10107.6°109.5°
C2QC3QN3Q110.3°109.6°
C2QC3QC4Q108.7°109.0°
C2QC3QH5107.5°109.6°
C3QC2QH8108.3°109.5°
N3QC3QC4Q113.9°109.6°
C3QN3QH4119.3°120.0°
N3QC3QH5108.6°109.6°
O3BPBO1B113.0°109.5°
PBO3BC1Q124.2°123.0°
PBO1BH15109.5°114.0°
O3BC1QO5Q110.9°109.5°
O3BC1QH10108.2°109.5°
C1QO5QC5Q112.8°114.1°
O5QC1QH10108.5°109.5°
C3QC4QO4Q111.5°109.5°
C3QC4QC5Q108.8°109.2°
C4QC3QH5107.6°109.5°
C3QC4QH6107.9°109.5°
O5QC5QC4Q111.0°109.4°
O5QC5QC6Q106.0°109.5°
O5QC5QH11109.4°109.6°
O4QC4QC5Q111.4°109.5°
O4QC4QH6109.1°109.5°
C4QO4QH7109.5°114.0°
C4QC5QC6Q113.4°109.5°
C5QC4QH6108.1°109.6°
C4QC5QH11108.6°109.4°
C6QC5QH11108.4°109.5°
C5QC6QH12109.5°109.5°
C5QC6QH13109.5°109.4°
C5QC6QH14109.4°109.5°
H1C3MH2109.5°109.5°
H1C3MH3109.5°109.4°
H2C3MH3109.5°109.4°
H12C6QH13109.4°109.4°
H12C6QH14109.5°109.5°
H13C6QH14109.5°109.5°
H17C5'H18109.4°109.4°
H22C2'H23109.4°110.6°
H27C5MH28109.5°109.5°
H27C5MH29109.4°109.5°
H28C5MH29109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4C4N3C5179.0°180.0°
O4C4N3C2178.1°180.0°
O4C4C5C5M0.6°0.0°
O4C4C5C6177.6°179.8°
O4C4N3H251.9°0.0°
C4N3C2H25180.0°179.9°
N3C4C5C5M179.5°180.0°
N3C4C5C63.5°0.2°
C4N3C2O2176.5°180.0°
C4N3C2N13.4°0.3°
C5C4N3C20.9°0.0°
C4C5C5MC6177.0°179.8°
C4C5C6N15.2°0.2°
C5C4N3H25179.1°180.0°
C4C5C6H26174.8°179.7°
C4C5C5MH27180.0°90.3°
C4C5C5MH2860.0°29.7°
C4C5C5MH2960.0°149.8°
N3C2O2N1173.1°179.7°
N3C2N1C61.5°0.3°
N3C2N1C1'173.5°179.7°
C5MC5C6N1177.7°180.0°
C5MC5C6H262.3°0.1°
C5C5MH27H28120.0°120.0°
C5C5MH27H29120.0°120.0°
C5C5MH28H29120.0°120.0°
C5C6N1C22.8°0.1°
C5C6N1H26180.0°179.9°
C5C6N1C1'177.6°180.0°
C6C5C5MH273.0°90.0°
C6C5C5MH28117.0°150.0°
C6C5C5MH29123.0°30.0°
O2C2N1C6174.8°180.0°
O2C2N1C1'0.1°0.0°
O2C2N3H253.5°0.1°
C2N1C6C1'174.8°180.0°
C2N1C1'C2'80.5°65.0°
C2N1C1'O4'166.2°52.8°
C2N1C1'H2442.3°173.9°
N1C2N3H25176.6°179.8°
C2N1C6H26177.2°179.9°
C6N1C1'C2'94.4°115.1°
C6N1C1'O4'18.9°127.2°
C6N1C1'H24142.8°6.1°
N1C1'C2'O4'115.9°119.4°
N1C1'C2'H24123.2°121.2°
N1C1'C2'C3'94.1°121.5°
N1C1'O4'H24123.3°121.2°
N1C1'O4'C4'119.2°145.9°
N1C1'C2'H22147.1°2.7°
N1C1'C2'H2324.6°119.9°
C1'N1C6H262.4°0.1°
C1'C2'C3'H22118.8°118.7°
C1'C2'C3'H23118.8°118.6°
C2'C1'O4'H24119.7°119.4°
C1'C2'C3'O3'155.6°139.0°
C1'C2'C3'C4'37.0°20.8°
C2'C1'O4'C4'2.2°26.5°
C1'C2'C3'H2081.9°97.5°
C1'C2'H22H23123.6°122.6°
C3'C2'C1'O4'21.7°2.1°
C2'C3'O3'C4'112.3°112.7°
C2'C3'O3'H20121.6°123.6°
C2'C3'C4'H20118.5°118.3°
C2'C3'C4'O4'38.3°37.0°
C2'C3'C4'C5'153.9°155.5°
C2'C3'C4'H1982.0°81.6°
C2'C3'O3'H21180.0°67.3°
C3'C2'H22H23123.5°122.7°
C3'C2'C1'H24142.7°117.3°
C1'O4'C4'C3'25.9°40.0°
C1'O4'C4'C5'143.1°158.6°
C1'O4'C4'H1993.7°78.6°
O4'C1'C2'H2297.0°116.7°
O4'C1'C2'H23140.5°120.7°
O3'C3'C4'H20126.5°123.5°
O3'C3'C4'O4'153.2°155.2°
O3'C3'C4'C5'91.2°86.3°
O3'C3'C4'H1932.9°36.6°
O3'C3'C2'H2236.8°102.3°
O3'C3'C2'H2385.6°20.4°
C3'C4'O4'C5'117.3°118.6°
C3'C4'O4'H19119.6°118.6°
C3'C4'C5'H19124.4°122.9°
C3'C4'C5'O5'174.3°177.2°
C3'C4'C5'H1755.5°62.7°
C3'C4'C5'H1866.8°57.2°
C4'C3'O3'H2167.7°180.0°
C4'C3'C2'H2281.8°139.5°
C4'C3'C2'H23155.8°97.8°
O4'C4'C5'H19124.1°122.9°
O4'C4'C5'O5'74.2°68.6°
O4'C4'C5'H17167.0°51.5°
O4'C4'C5'H1844.7°171.3°
O4'C4'C3'H2080.3°81.3°
C4'O4'C1'H24117.5°92.9°
C4'C5'O5'H17118.9°120.1°
C4'C5'O5'H18118.9°120.1°
C4'C5'O5'PA114.7°180.0°
C4'C5'H17H18123.4°120.0°
C5'C4'C3'H2035.4°37.2°
C5'O5'PAO2A49.5°55.0°
C5'O5'PAO3A62.0°175.0°
C5'O5'PAO1A179.1°65.0°
O5'C5'H17H18123.3°120.0°
O5'C5'C4'H1949.9°54.3°
O5'PAO2AO3A111.6°120.0°
O5'PAO2AO1A123.0°120.0°
O5'PAO3AO1A114.5°120.0°
O5'PAO3APB94.3°165.0°
O5'PAO1AH16125.6°60.0°
PAO5'C5'H174.1°60.0°
PAO5'C5'H18126.4°59.9°
C3MC3O3N3Q179.9°180.0°
C3MC3N3QC3Q157.7°180.0°
C3C3MH1H2120.0°120.0°
C3C3MH1H3120.0°120.0°
C3C3MH2H3120.0°120.0°
C3MC3N3QH422.3°0.0°
O2QC2QC1QC3Q120.6°119.9°
O2QC2QC1QH8121.1°120.2°
O2QC2QC3QH8119.7°120.1°
O2QC2QC3QN3Q58.2°63.2°
O2QC2QC1QO3B50.6°57.6°
O2QC2QC1QO5Q173.7°177.5°
O2QC2QC3QC4Q176.2°176.9°
O2QC2QC3QH560.0°57.1°
O2QC2QC1QH1064.8°62.5°
O2APAO3AO1A128.9°120.0°
O2APAO3APB149.0°45.0°
O2APAO1AH160.0°180.0°
PAO3APBO2B85.3°45.0°
PAO3APBO3B165.7°165.0°
PAO3APBO1B46.7°75.0°
O3APAO1AH16121.1°60.0°
O1APAO3APB20.2°75.0°
O3APBO2BO3B103.6°120.0°
O3APBO2BO1B129.0°120.0°
O3APBO3BO1B118.8°120.0°
O3APBO3BC1Q42.3°175.0°
O3APBO1BH15126.6°60.0°
O2BPBO3BO1B130.3°120.0°
O2BPBO3BC1Q153.2°55.0°
O2BPBO1BH150.0°180.0°
O3C3N3QC3Q22.4°0.0°
O3C3C3MH10.0°0.0°
O3C3C3MH2120.0°120.0°
O3C3C3MH3120.0°120.0°
O3C3N3QH4157.6°180.0°
C3N3QC3QC2Q108.0°85.4°
C3N3QC3QH4180.0°180.0°
C3N3QC3QC4Q129.5°155.0°
N3QC3C3MH1179.9°180.0°
N3QC3C3MH260.1°60.0°
N3QC3C3MH359.9°60.0°
C3N3QC3QH59.6°34.9°
C1QC2QC3QH8118.7°120.0°
C1QC2QC3QN3Q179.8°176.8°
C2QC1QO3BPB148.0°150.0°
C2QC1QO3BO5Q126.2°119.9°
C2QC1QO3BH10115.0°120.1°
C2QC1QO5QH10121.0°120.0°
C1QC2QC3QC4Q54.7°56.9°
C2QC1QO5QC5Q53.6°61.2°
C1QC2QC3QH561.5°62.9°
C1QC2QO2QH9180.0°60.0°
C2QC3QN3QC4Q122.5°119.6°
C2QC3QN3QH5117.6°120.3°
C3QC2QC1QO3B70.0°62.4°
C3QC2QC1QO5Q53.1°57.6°
C2QC3QC4QH5116.2°119.9°
C2QC3QC4QO4Q64.6°63.0°
C2QC3QC4QC5Q58.7°56.9°
C2QC3QN3QH472.0°94.6°
C2QC3QC4QH6175.7°176.9°
C3QC2QO2QH959.4°179.7°
C3QC2QC1QH10174.6°177.6°
N3QC3QC4QH5120.5°120.2°
N3QC3QC4QO4Q58.8°57.0°
N3QC3QC4QC5Q178.0°176.9°
N3QC3QC4QH660.9°63.1°
N3QC3QC2QH861.5°56.9°
PBO3BC1QO5Q85.8°90.1°
PBO3BC1QH1033.0°29.9°
O3BPBO1BH15123.7°60.0°
O1BPBO3BC1Q76.5°65.0°
O3BC1QO5QH10118.7°120.0°
O3BC1QO5QC5Q66.6°58.8°
O3BC1QC2QH8171.7°177.7°
C1QO5QC5QC4Q55.3°61.2°
C1QO5QC5QC6Q178.8°178.8°
O5QC1QC2QH865.2°62.3°
C1QO5QC5QH1164.5°58.8°
C3QC4QC5QO5Q58.8°57.6°
C3QC4QO4QC5Q121.8°119.7°
C3QC4QO4QH6119.0°120.1°
C3QC4QC5QH6116.9°120.0°
C3QC4QC5QC6Q177.9°177.6°
C4QC3QN3QH450.5°25.0°
C3QC4QO4QH7180.0°180.0°
C4QC3QC2QH864.0°63.0°
C3QC4QC5QH1161.5°62.4°
O5QC5QC4QO4Q64.5°62.3°
O5QC5QC4QC6Q119.1°120.0°
O5QC5QC4QH11120.3°120.0°
O5QC5QC6QH11117.4°120.1°
O5QC5QC4QH6175.7°177.6°
C5QO5QC1QH10174.7°178.8°
O5QC5QC6QH12180.0°59.9°
O5QC5QC6QH1360.0°60.1°
O5QC5QC6QH1460.0°179.9°
O4QC4QC5QH6119.8°120.1°
O4QC4QC5QC6Q54.6°57.7°
O4QC4QC3QH5179.3°177.2°
O4QC4QC5QH11175.2°177.7°
C4QC5QC6QH11120.7°120.0°
C5QC4QC3QH557.5°62.9°
C5QC4QO4QH758.2°60.3°
C4QC5QC6QH1258.1°60.0°
C4QC5QC6QH1361.9°180.0°
C4QC5QC6QH14178.0°60.0°
C6QC5QC4QH665.2°62.4°
C5QC6QH12H13120.0°119.9°
C5QC6QH12H14120.0°120.0°
C5QC6QH13H14120.0°120.0°
H1C3MH2H3120.0°119.9°
H4N3QC3QH5170.4°145.1°
H5C3QC4QH659.5°57.1°
H5C3QC2QH8179.8°177.2°
H6C4QO4QH761.0°59.8°
H6C4QC5QH1155.4°57.6°
H8C2QO2QH959.4°60.2°
H8C2QC1QH1056.3°57.7°
H11C5QC6QH1262.6°180.0°
H11C5QC6QH13177.4°60.1°
H11C5QC6QH1457.4°60.0°
H12C6QH13H14120.0°120.0°
H17C5'C4'H1968.9°174.3°
H18C5'C4'H19168.8°65.8°
H19C4'C3'H20159.4°160.1°
H20C3'O3'H2158.4°56.4°
H20C3'C2'H22159.3°21.2°
H20C3'C2'H2336.9°143.9°
H22C2'C1'H2423.9°123.9°
H23C2'C1'H2498.5°1.3°
H27C5MH28H29120.0°120.0°

222415

PDB entries from 2024-07-10

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