Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

85Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C32C33doub1.36Å1.39ÅAromatic
C32C31sing1.39Å1.40ÅAromatic
C33C27sing1.40Å1.38ÅAromatic
C31C30doub1.36Å1.41ÅAromatic
C27C28doub1.41Å1.41ÅAromatic
C27C26sing1.42Å1.47ÅAromatic
C30C26sing1.41Å1.40ÅAromatic
C28C29sing1.36Å1.37ÅAromatic
C26C25doub1.40Å1.39ÅAromatic
C29C24doub1.39Å1.42ÅAromatic
C25C24sing1.36Å1.36ÅAromatic
C24C23sing1.51Å1.49Å
C23N22sing1.46Å1.47Å
N22C20sing1.35Å1.41Å
C20O21doub1.22Å1.38Å
C20C5sing1.47Å1.48Å
O4C4doub1.22Å1.25Å
C4C5sing1.47Å1.49Å
C4N3sing1.35Å1.33Å
C5C6doub1.38Å1.42Å
N3C2sing1.34Å1.37Å
C6N1sing1.36Å1.33Å
C2N1sing1.34Å1.43Å
C2O2doub1.22Å1.28Å
N1C1'sing1.46Å1.46Å
C2'C1'sing1.54Å1.49Å
C2'C3'sing1.55Å1.51Å
C1'O4'sing1.44Å1.41Å
O3'C3'sing1.43Å1.43Å
C3'C4'sing1.54Å1.53Å
O4'C4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.55Å
O5'C5'sing1.43Å1.45Å
O5'Psing1.61Å1.64Å
OP2Psing1.61Å1.50Å
POP3sing1.61Å1.46Å
C30H1sing1.08Å1.08Å
C33H2sing1.08Å1.08Å
C23H3sing1.09Å1.10Å
C23H4sing1.09Å1.10Å
C25H5sing1.08Å1.08Å
N3H6sing0.97Å1.00Å
C6H7sing1.08Å1.08Å
C1'H8sing1.09Å1.10Å
C2'H9sing1.09Å1.10Å
C2'H10sing1.09Å1.10Å
C3'H11sing1.09Å1.10Å
O3'H12sing0.97Å0.95Å
C4'H13sing1.09Å1.10Å
C5'H14sing1.09Å1.10Å
C5'H15sing1.09Å1.10Å
OP3HOP3sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
N22H18sing0.97Å1.00Å
C28H19sing1.08Å1.08Å
C29H20sing1.08Å1.08Å
C31H21sing1.08Å1.08Å
C32H22sing1.08Å1.08Å
POP1doub1.48Å1.51Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C33C32C31121.1°121.0°
C32C33C27119.1°119.7°
C32C33H2120.4°120.2°
C33C32H22119.5°119.5°
C32C31C30122.1°121.0°
C32C31H21118.9°119.5°
C31C32H22119.5°119.5°
C33C27C28121.5°121.3°
C33C27C26119.9°119.4°
C27C33H2120.4°120.2°
C31C30C26117.1°119.7°
C31C30H1121.5°120.2°
C30C31H21119.0°119.5°
C28C27C26118.5°119.3°
C27C28C29120.8°119.6°
C27C28H19119.6°120.1°
C27C26C30120.3°119.3°
C27C26C25118.4°119.4°
C30C26C25120.9°121.3°
C26C30H1121.4°120.2°
C28C29C24119.8°121.0°
C29C28H19119.6°120.2°
C28C29H20120.1°119.5°
C26C25C24120.9°119.7°
C26C25H5119.6°120.2°
C29C24C25121.3°121.0°
C29C24C23118.9°119.5°
C24C29H20120.1°119.5°
C25C24C23119.8°119.5°
C24C25H5119.6°120.2°
C24C23N22118.5°109.5°
C24C23H3107.2°109.5°
C24C23H4107.2°109.5°
C23N22C20116.5°120.0°
N22C23H3107.1°109.5°
N22C23H4107.1°109.5°
C23N22H18121.7°120.0°
N22C20O21119.1°120.0°
N22C20C5115.9°120.0°
C20N22H18121.7°120.0°
O21C20C5114.3°120.0°
C20C5C4124.4°121.0°
C20C5C6114.6°120.9°
O4C4C5123.6°120.7°
O4C4N3118.1°120.8°
C5C4N3118.1°118.5°
C4C5C6120.2°118.1°
C4N3C2120.2°120.5°
C4N3H6119.9°119.8°
C5C6N1118.7°119.3°
C5C6H7120.6°120.4°
N3C2N1122.7°122.1°
N3C2O2119.1°119.0°
C2N3H6119.9°119.8°
C6N1C2119.7°121.5°
C6N1C1'124.8°119.3°
N1C6H7120.7°120.4°
N1C2O2118.1°118.9°
C2N1C1'115.1°119.3°
N1C1'C2'115.4°110.3°
N1C1'O4'111.2°110.4°
N1C1'H8108.3°110.3°
C1'C2'C3'102.3°104.0°
C2'C1'O4'104.9°104.8°
C2'C1'H8107.8°110.5°
C1'C2'H9111.2°110.5°
C1'C2'H10111.2°110.6°
C2'C3'O3'114.6°110.6°
C2'C3'C4'103.3°104.1°
C3'C2'H9111.3°110.5°
C3'C2'H10111.2°110.6°
C2'C3'H11109.3°110.5°
C1'O4'C4'107.3°105.3°
O4'C1'H8109.0°110.4°
O3'C3'C4'109.9°110.5°
O3'C3'H11110.4°110.6°
C3'O3'H12109.5°114.0°
C3'C4'O4'106.7°104.8°
C3'C4'C5'111.1°110.4°
C4'C3'H11109.1°110.5°
C3'C4'H13109.9°110.3°
O4'C4'C5'108.2°110.4°
O4'C4'H13111.2°110.4°
C4'C5'O5'109.9°109.5°
C5'C4'H13109.7°110.4°
C4'C5'H14109.4°109.4°
C4'C5'H15109.4°109.4°
C5'O5'P120.3°123.0°
O5'C5'H14109.4°109.5°
O5'C5'H15109.4°109.5°
O5'POP2103.8°109.5°
O5'POP3108.0°109.5°
O5'POP196.3°109.4°
OP2POP3122.0°109.5°
POP2HOP2109.5°114.0°
OP2POP1104.9°109.5°
POP3HOP3109.5°114.0°
OP3POP1118.0°109.5°
H3C23H4109.5°109.5°
H9C2'H10109.5°110.5°
H14C5'H15109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C33C32C31H22180.0°179.9°
C32C33C27H2180.0°179.9°
C33C32C31C303.6°0.1°
C32C33C27C28178.2°180.0°
C32C33C27C265.4°0.1°
C33C32C31H21176.5°180.0°
C31C32C33C270.7°0.1°
C32C31C30H21180.0°179.9°
C32C31C30C262.8°0.0°
C32C31C30H1177.3°180.0°
C31C32C33H2179.2°180.0°
C33C27C28C26176.4°180.0°
C33C27C26C306.2°0.0°
C33C27C28C29175.5°179.7°
C33C27C26C25179.0°179.9°
C33C27C28H194.5°0.0°
C27C33C32H22179.3°180.0°
C31C30C26C272.0°0.0°
C31C30C26H1180.0°180.0°
C31C30C26C25174.7°179.9°
C30C31C32H22176.4°180.0°
C28C27C26C30177.4°180.0°
C27C28C29H19180.0°179.8°
C28C27C26C254.5°0.0°
C27C28C29C244.4°0.5°
C28C27C33H21.8°0.0°
C27C28C29H20175.5°180.0°
C27C26C30C25172.7°180.0°
C26C27C28C290.9°0.2°
C27C26C25C246.4°0.1°
C27C26C30H1178.0°180.0°
C26C27C33H2174.6°180.0°
C27C26C25H5173.7°179.9°
C26C27C28H19179.2°180.0°
C30C26C25C24179.2°180.0°
C30C26C25H50.8°0.1°
C26C30C31H21177.2°180.0°
C28C29C24H20180.0°179.5°
C28C29C24C252.7°0.5°
C28C29C24C23178.0°179.8°
C26C25C24C292.9°0.3°
C26C25C24H5180.0°179.9°
C26C25C24C23176.4°180.0°
C25C26C30H15.3°0.0°
C29C24C25C23179.3°179.7°
C29C24C23N22160.9°90.3°
C29C24C23H377.8°29.7°
C29C24C23H439.6°149.8°
C29C24C25H5177.1°179.8°
C24C29C28H19175.6°179.8°
C25C24C23N2218.5°90.0°
C25C24C23H3102.8°150.0°
C25C24C23H4139.8°30.0°
C25C24C29H20177.3°180.0°
C24C23N22H3121.3°120.0°
C24C23N22H4121.3°120.0°
C24C23N22C2088.9°180.0°
C24C23H3H4115.9°120.0°
C23C24C25H53.5°0.1°
C24C23N22H1891.0°0.0°
C23C24C29H202.0°0.2°
C23N22C20H18180.0°180.0°
C23N22C20O2130.5°5.1°
C23N22C20C5173.0°174.9°
N22C23H3H4115.9°120.0°
N22C20O21C5143.0°180.0°
N22C20C5C414.1°5.9°
N22C20C5C6176.8°174.3°
C20N22C23H332.4°60.0°
C20N22C23H4149.8°60.0°
O21C20C5C4158.4°174.1°
O21C20C5C632.5°5.6°
O21C20N22H18149.5°174.9°
C20C5C4O410.5°0.2°
C20C5C4C6168.6°179.7°
C20C5C4N3174.4°179.9°
C20C5C6N1176.7°179.8°
C20C5C6H73.2°0.0°
C5C20N22H187.1°5.1°
O4C4C5N3175.0°179.8°
O4C4C5C6179.1°180.0°
O4C4N3C2177.5°179.8°
O4C4N3H62.5°0.1°
C5C4N3C22.2°0.0°
C4C5C6N17.1°0.5°
C5C4N3H6177.8°180.0°
C4C5C6H7172.8°179.7°
N3C4C5C65.9°0.2°
C4N3C2H6180.0°179.9°
C4N3C2N10.1°0.0°
C4N3C2O2177.3°179.7°
C5C6N1H7180.0°179.8°
C5C6N1C24.7°0.5°
C5C6N1C1'177.7°179.5°
N3C2N1C61.1°0.3°
N3C2N1O2177.2°179.7°
N3C2N1C1'174.8°179.8°
C6N1C2C1'173.6°180.0°
C6N1C2O2176.1°180.0°
C6N1C1'C2'2.1°118.1°
C6N1C1'O4'121.5°126.5°
C6N1C1'H8118.8°4.2°
C2N1C1'C2'175.4°61.8°
C2N1C1'O4'65.3°53.6°
N1C2N3H6179.9°180.0°
C2N1C6H7175.2°179.7°
C2N1C1'H854.4°175.8°
O2C2N1C1'2.5°0.1°
O2C2N3H62.7°0.3°
N1C1'C2'O4'122.8°118.8°
N1C1'C2'H8121.1°122.3°
N1C1'C2'C3'162.4°142.9°
N1C1'O4'H8119.3°122.2°
N1C1'O4'C4'161.5°159.3°
C1'N1C6H72.3°0.3°
N1C1'C2'H978.8°98.6°
N1C1'C2'H1043.5°24.1°
C1'C2'C3'H9118.9°118.6°
C1'C2'C3'H10118.8°118.7°
C2'C1'O4'H8115.3°119.0°
C1'C2'C3'O3'92.0°118.6°
C1'C2'C3'C4'27.6°0.0°
C2'C1'O4'C4'36.0°40.5°
C1'C2'H9H10123.3°122.7°
C1'C2'C3'H11143.5°118.7°
C3'C2'C1'O4'39.6°24.0°
C2'C3'O3'C4'115.8°114.7°
C2'C3'O3'H11123.8°122.7°
C2'C3'C4'H11116.1°118.6°
C2'C3'C4'O4'7.3°23.9°
C2'C3'C4'C5'110.5°142.8°
C3'C2'C1'H876.5°94.9°
C3'C2'H9H10123.3°122.7°
C2'C3'O3'H12180.0°61.4°
C2'C3'C4'H13128.0°94.9°
C1'O4'C4'C3'17.6°40.5°
C1'O4'C4'C5'137.2°159.3°
O4'C1'C2'H9158.5°142.6°
O4'C1'C2'H1079.2°94.7°
C1'O4'C4'H13102.2°78.3°
O3'C3'C4'H11121.2°122.7°
O3'C3'C4'O4'115.4°142.6°
O3'C3'C4'C5'126.9°98.5°
O3'C3'C2'H926.9°0.0°
O3'C3'C2'H10149.2°122.7°
O3'C3'C4'H135.3°23.8°
C3'C4'O4'C5'119.6°118.8°
C3'C4'O4'H13119.9°118.8°
C3'C4'C5'H13121.7°122.3°
C3'C4'C5'O5'53.2°178.1°
C4'C3'C2'H9146.4°118.6°
C4'C3'C2'H1091.3°118.7°
C4'C3'O3'H1264.2°176.1°
C3'C4'C5'H14173.3°58.1°
C3'C4'C5'H1566.8°61.9°
O4'C4'C5'H13121.5°122.3°
O4'C4'C5'O5'63.6°66.4°
C4'O4'C1'H879.2°78.4°
O4'C4'C3'H11123.4°94.7°
O4'C4'C5'H1456.5°173.5°
O4'C4'C5'H15176.4°53.6°
C4'C5'O5'H14120.0°120.0°
C4'C5'O5'H15120.1°120.0°
C4'C5'O5'P172.1°180.0°
C5'C4'C3'H115.7°24.2°
C4'C5'H14H15119.8°120.0°
C5'O5'POP2176.3°175.0°
C5'O5'POP345.5°65.0°
O5'C5'C4'H13174.9°55.9°
O5'C5'H14H15119.8°120.0°
C5'O5'POP176.6°55.0°
O5'POP2OP3121.9°120.0°
O5'POP2OP1100.5°120.0°
O5'POP3OP1107.6°119.9°
PO5'C5'H1452.1°60.0°
PO5'C5'H1567.8°60.0°
O5'POP3HOP3107.6°60.0°
O5'POP2HOP2100.5°180.0°
OP2POP3OP1132.4°120.1°
OP2POP3HOP3132.4°60.0°
OP3POP2HOP2137.6°60.0°
H1C30C31H212.7°0.0°
H2C33C32H220.7°0.0°
H3C23N22H18147.7°120.0°
H4C23N22H1830.2°120.0°
H8C1'C2'H942.4°23.7°
H8C1'C2'H10164.7°146.4°
H9C2'C3'H1197.6°122.7°
H10C2'C3'H1124.7°0.0°
H11C3'O3'H1256.1°61.2°
H11C3'C4'H13115.9°146.5°
H13C4'C5'H1465.0°64.1°
H13C4'C5'H1554.9°175.9°
HOP3OP3POP10.0°179.9°
HOP2OP2POP10.0°60.0°
H19C28C29H204.4°0.2°
H21C31C32H223.6°0.1°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon