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Summary Geometry Related PDB entries

7ZL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C3	C1	doub	1.38Å	1.38Å	Aromatic
C3	C5	sing	1.38Å	1.38Å	Aromatic
C1	C2	sing	1.38Å	1.38Å	Aromatic
C5	C7	doub	1.39Å	1.37Å	Aromatic
C2	C4	doub	1.38Å	1.38Å	Aromatic
C7	C4	sing	1.39Å	1.39Å	Aromatic
C7	N14	sing	1.40Å	1.41Å
N14	C9	sing	1.39Å	1.40Å
C9	N12	doub	1.33Å	1.34Å	Aromatic
C9	C8	sing	1.40Å	1.38Å	Aromatic
CL1	C8	sing	1.74Å	1.72Å
N12	C10	sing	1.32Å	1.34Å	Aromatic
C8	C6	doub	1.38Å	1.37Å	Aromatic
C10	N13	sing	1.38Å	1.38Å
C10	N11	doub	1.32Å	1.34Å	Aromatic
C6	N11	sing	1.32Å	1.34Å	Aromatic
C4	H1	sing	1.08Å	1.08Å
C5	H2	sing	1.08Å	1.08Å
C6	H3	sing	1.08Å	1.08Å
C1	H4	sing	1.08Å	1.08Å
C2	H5	sing	1.08Å	1.08Å
C3	H6	sing	1.08Å	1.08Å
N13	H7	sing	0.97Å	1.00Å
N13	H8	sing	0.97Å	1.00Å
N14	H9	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C3	C5	121.7°	120.1°
C3	C1	C2	118.1°	120.1°
C3	C1	H4	120.9°	119.9°
C1	C3	H6	119.1°	120.0°
C3	C5	C7	120.1°	119.9°
C3	C5	H2	120.0°	120.1°
C5	C3	H6	119.1°	119.9°
C1	C2	C4	120.6°	120.1°
C2	C1	H4	120.9°	120.0°
C1	C2	H5	119.7°	119.9°
C5	C7	C4	118.7°	119.8°
C5	C7	N14	120.3°	120.1°
C7	C5	H2	120.0°	120.0°
C2	C4	C7	120.8°	119.9°
C2	C4	H1	119.6°	120.1°
C4	C2	H5	119.7°	120.0°
C4	C7	N14	121.0°	120.1°
C7	C4	H1	119.6°	120.0°
C7	N14	C9	126.1°	120.0°
C7	N14	H9	117.0°	120.0°
N14	C9	N12	118.9°	120.5°
N14	C9	C8	120.7°	120.5°
C9	N14	H9	116.9°	120.0°
N12	C9	C8	120.5°	119.0°
C9	N12	C10	116.8°	120.7°
C9	C8	CL1	123.5°	120.8°
C9	C8	C6	118.3°	118.4°
CL1	C8	C6	118.2°	120.8°
N12	C10	N13	116.0°	119.2°
N12	C10	N11	126.8°	121.6°
C8	C6	N11	122.6°	119.3°
C8	C6	H3	118.7°	120.3°
N13	C10	N11	117.2°	119.2°
C10	N13	H7	109.5°	120.0°
C10	N13	H8	109.5°	120.1°
C10	N11	C6	115.0°	121.0°
N11	C6	H3	118.7°	120.4°
H7	N13	H8	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C3	C5	H6	180.0°	179.6°
C3	C1	C2	H4	180.0°	179.9°
C1	C3	C5	C7	0.2°	0.3°
C3	C1	C2	C4	0.6°	0.1°
C1	C3	C5	H2	179.8°	179.7°
C3	C1	C2	H5	179.4°	180.0°
C5	C3	C1	C2	0.3°	0.3°
C3	C5	C7	H2	180.0°	180.0°
C3	C5	C7	C4	0.5°	0.0°
C3	C5	C7	N14	179.8°	180.0°
C5	C3	C1	H4	179.6°	179.7°
C1	C2	C4	H5	180.0°	180.0°
C1	C2	C4	C7	0.3°	0.2°
C1	C2	C4	H1	179.8°	179.9°
C2	C1	C3	H6	179.7°	180.0°
C5	C7	C4	C2	0.3°	0.3°
C5	C7	C4	N14	179.7°	180.0°
C5	C7	N14	C9	131.2°	144.2°
C5	C7	C4	H1	179.7°	180.0°
C7	C5	C3	H6	179.8°	179.9°
C5	C7	N14	H9	48.8°	35.8°
C2	C4	C7	H1	180.0°	179.7°
C2	C4	C7	N14	180.0°	179.8°
C4	C2	C1	H4	179.4°	180.0°
C4	C7	N14	C9	48.4°	35.8°
C4	C7	C5	H2	179.5°	180.0°
C7	C4	C2	H5	179.7°	179.7°
C4	C7	N14	H9	131.6°	144.2°
C7	N14	C9	H9	180.0°	180.0°
C7	N14	C9	N12	2.2°	5.7°
C7	N14	C9	C8	177.9°	174.3°
N14	C7	C4	H1	0.0°	0.0°
N14	C7	C5	H2	0.2°	0.1°
N14	C9	N12	C8	179.9°	180.0°
N14	C9	C8	CL1	0.7°	0.0°
N14	C9	N12	C10	179.3°	179.7°
N14	C9	C8	C6	178.9°	180.0°
N12	C9	C8	CL1	179.2°	180.0°
N12	C9	C8	C6	1.1°	0.0°
C9	N12	C10	N13	179.9°	179.9°
C9	N12	C10	N11	0.3°	0.6°
N12	C9	N14	H9	177.8°	174.3°
C9	C8	CL1	C6	179.6°	180.0°
C8	C9	N12	C10	0.7°	0.3°
C9	C8	C6	N11	0.6°	0.0°
C9	C8	C6	H3	179.4°	179.8°
C8	C9	N14	H9	2.1°	5.7°
CL1	C8	C6	N11	179.7°	180.0°
CL1	C8	C6	H3	0.3°	0.2°
N12	C10	N13	N11	179.8°	179.5°
N12	C10	N11	C6	0.8°	0.5°
N12	C10	N13	H7	0.0°	179.5°
N12	C10	N13	H8	120.0°	0.5°
C8	C6	N11	C10	0.3°	0.2°
C8	C6	N11	H3	180.0°	179.8°
N13	C10	N11	C6	179.4°	180.0°
C10	N13	H7	H8	120.0°	180.0°
C10	N11	C6	H3	179.7°	180.0°
N11	C10	N13	H7	179.9°	0.0°
N11	C10	N13	H8	59.8°	180.0°
H1	C4	C2	H5	0.2°	0.0°
H2	C5	C3	H6	0.2°	0.0°
H4	C1	C2	H5	0.6°	0.0°
H4	C1	C3	H6	0.3°	0.1°

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PDB entries from 2024-10-09

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