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Summary Geometry Related PDB entries

7XM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N11	C8	sing	1.39Å	1.40Å
C9	C8	sing	1.40Å	1.40Å	Aromatic
C9	C5	doub	1.36Å	1.36Å	Aromatic
C8	C6	doub	1.38Å	1.39Å	Aromatic
C5	C1	sing	1.40Å	1.39Å	Aromatic
C6	C3	sing	1.40Å	1.38Å	Aromatic
C1	C3	doub	1.42Å	1.41Å	Aromatic
C1	C2	sing	1.41Å	1.41Å	Aromatic
C3	C12	sing	1.41Å	1.40Å	Aromatic
N7	C2	sing	1.38Å	1.39Å
C2	N4	doub	1.32Å	1.32Å	Aromatic
C12	C10	doub	1.36Å	1.36Å	Aromatic
N4	C10	sing	1.33Å	1.34Å	Aromatic
C5	H1	sing	1.08Å	1.08Å
C6	H2	sing	1.08Å	1.08Å
C10	H3	sing	1.08Å	1.08Å
N7	H4	sing	0.97Å	1.00Å
N7	H5	sing	0.97Å	1.00Å
C9	H6	sing	1.08Å	1.08Å
N11	H7	sing	0.97Å	1.00Å
N11	H8	sing	0.97Å	1.00Å
C12	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N11	C8	C9	118.7°	119.7°
N11	C8	C6	119.6°	119.6°
C8	N11	H7	109.5°	120.0°
C8	N11	H8	109.5°	120.0°
C8	C9	C5	120.5°	121.0°
C9	C8	C6	121.7°	120.7°
C8	C9	H6	119.8°	119.5°
C9	C5	C1	118.8°	119.7°
C9	C5	H1	120.6°	120.1°
C5	C9	H6	119.8°	119.5°
C8	C6	C3	117.7°	119.3°
C8	C6	H2	121.1°	120.3°
C5	C1	C3	120.9°	119.7°
C5	C1	C2	120.3°	121.9°
C1	C5	H1	120.6°	120.1°
C6	C3	C1	120.4°	119.6°
C6	C3	C12	120.9°	122.1°
C3	C6	H2	121.1°	120.4°
C3	C1	C2	118.9°	118.4°
C1	C3	C12	118.8°	118.3°
C1	C2	N7	120.6°	120.1°
C1	C2	N4	119.3°	119.8°
C3	C12	C10	119.0°	118.9°
C3	C12	H9	120.5°	120.6°
N7	C2	N4	120.1°	120.1°
C2	N7	H4	109.5°	120.0°
C2	N7	H5	109.5°	120.0°
C2	N4	C10	123.0°	122.6°
C12	C10	N4	121.0°	122.0°
C12	C10	H3	119.5°	119.1°
C10	C12	H9	120.5°	120.5°
N4	C10	H3	119.5°	119.0°
H4	N7	H5	109.5°	120.0°
H7	N11	H8	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N11	C8	C9	C6	180.0°	179.2°
N11	C8	C9	C5	179.8°	179.7°
N11	C8	C6	C3	179.8°	179.9°
N11	C8	C6	H2	0.3°	0.6°
N11	C8	C9	H6	0.2°	0.8°
C8	N11	H7	H8	120.0°	179.9°
C8	C9	C5	H6	180.0°	179.5°
C8	C9	C5	C1	0.8°	0.1°
C9	C8	C6	C3	0.3°	0.8°
C8	C9	C5	H1	179.2°	179.7°
C9	C8	C6	H2	179.7°	179.8°
C9	C8	N11	H7	180.0°	179.2°
C9	C8	N11	H8	60.0°	0.9°
C5	C9	C8	C6	0.2°	0.5°
C9	C5	C1	H1	180.0°	179.7°
C9	C5	C1	C3	0.9°	0.3°
C9	C5	C1	C2	179.6°	179.7°
C8	C6	C3	H2	180.0°	179.5°
C8	C6	C3	C1	0.2°	0.5°
C8	C6	C3	C12	179.5°	179.5°
C6	C8	C9	H6	179.8°	180.0°
C6	C8	N11	H7	0.1°	0.0°
C6	C8	N11	H8	120.1°	180.0°
C5	C1	C3	C6	0.4°	0.0°
C5	C1	C3	C2	179.5°	180.0°
C5	C1	C3	C12	178.9°	180.0°
C5	C1	C2	N7	0.3°	0.0°
C5	C1	C2	N4	179.7°	180.0°
C1	C5	C9	H6	179.2°	179.5°
C6	C3	C1	C12	179.4°	180.0°
C6	C3	C1	C2	179.9°	180.0°
C6	C3	C12	C10	180.0°	179.9°
C6	C3	C12	H9	0.0°	0.0°
C3	C1	C2	N7	179.8°	180.0°
C3	C1	C2	N4	0.8°	0.1°
C1	C3	C12	C10	0.7°	0.1°
C3	C1	C5	H1	179.1°	179.9°
C1	C3	C6	H2	179.8°	180.0°
C1	C3	C12	H9	179.3°	180.0°
C2	C1	C3	C12	0.5°	0.1°
C1	C2	N7	N4	179.4°	179.9°
C1	C2	N4	C10	2.2°	0.1°
C2	C1	C5	H1	0.4°	0.0°
C1	C2	N7	H4	179.3°	0.0°
C1	C2	N7	H5	60.7°	179.9°
C3	C12	C10	H9	180.0°	179.9°
C3	C12	C10	N4	0.6°	0.1°
C12	C3	C6	H2	0.5°	0.1°
C3	C12	C10	H3	179.4°	180.0°
N7	C2	N4	C10	178.4°	180.0°
C2	N7	H4	H5	120.0°	179.9°
C2	N4	C10	C12	2.1°	0.1°
C2	N4	C10	H3	177.9°	180.0°
N4	C2	N7	H4	0.0°	179.9°
N4	C2	N7	H5	120.0°	0.0°
C12	C10	N4	H3	180.0°	179.9°
N4	C10	C12	H9	179.4°	180.0°
H1	C5	C9	H6	0.8°	0.2°
H3	C10	C12	H9	0.6°	0.1°

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PDB entries from 2024-11-13

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