7VO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CD1 | CG1 | sing | 1.53Å | 1.54Å | |
| CG1 | CB | sing | 1.53Å | 1.51Å | |
| CG2 | CB | sing | 1.53Å | 1.56Å | |
| CB | CA | sing | 1.53Å | 1.55Å | |
| N | CA | sing | 1.47Å | 1.50Å | |
| N | C4A | sing | 1.47Å | 1.45Å | |
| O1P | P | doub | 1.48Å | 1.45Å | |
| C5A | C5 | sing | 1.51Å | 1.40Å | |
| C5A | O4P | sing | 1.43Å | 1.41Å | |
| CA | C | sing | 1.51Å | 1.55Å | |
| O2P | P | sing | 1.61Å | 1.47Å | |
| C6 | C5 | doub | 1.38Å | 1.39Å | Aromatic |
| C6 | N1 | sing | 1.32Å | 1.33Å | Aromatic |
| C5 | C4 | sing | 1.39Å | 1.42Å | Aromatic |
| C4 | C4A | sing | 1.51Å | 1.39Å | |
| C4 | C3 | doub | 1.39Å | 1.38Å | Aromatic |
| N1 | C2 | doub | 1.32Å | 1.41Å | Aromatic |
| C | OXT | doub | 1.21Å | 1.25Å | |
| C | O | sing | 1.34Å | 1.24Å | |
| P | O4P | sing | 1.61Å | 1.65Å | |
| P | O3P | sing | 1.61Å | 1.45Å | |
| C3 | C2 | sing | 1.39Å | 1.39Å | Aromatic |
| C3 | O3 | sing | 1.36Å | 1.37Å | |
| C2 | C2A | sing | 1.51Å | 1.37Å | |
| C5A | H1 | sing | 1.09Å | 1.10Å | |
| C5A | H2 | sing | 1.09Å | 1.10Å | |
| C6 | H3 | sing | 1.08Å | 1.08Å | |
| C2A | H4 | sing | 1.09Å | 1.10Å | |
| C2A | H5 | sing | 1.09Å | 1.10Å | |
| C2A | H6 | sing | 1.09Å | 1.10Å | |
| C4A | H7 | sing | 1.09Å | 1.10Å | |
| C4A | H8 | sing | 1.09Å | 1.10Å | |
| N | H9 | sing | 1.01Å | 1.00Å | |
| CA | H11 | sing | 1.09Å | 1.10Å | |
| CB | H12 | sing | 1.09Å | 1.10Å | |
| O | H13 | sing | 0.97Å | 0.95Å | |
| O3P | H14 | sing | 0.97Å | 0.95Å | |
| O2P | H15 | sing | 0.97Å | 0.95Å | |
| O3 | H16 | sing | 0.97Å | 0.95Å | |
| CG2 | H17 | sing | 1.09Å | 1.10Å | |
| CG2 | H18 | sing | 1.09Å | 1.10Å | |
| CG2 | H19 | sing | 1.09Å | 1.10Å | |
| CG1 | H20 | sing | 1.09Å | 1.10Å | |
| CG1 | H21 | sing | 1.09Å | 1.10Å | |
| CD1 | H22 | sing | 1.09Å | 1.10Å | |
| CD1 | H23 | sing | 1.09Å | 1.10Å | |
| CD1 | H24 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CD1 | CG1 | CB | 106.9° | 109.5° |
| CD1 | CG1 | H20 | 110.1° | 109.4° |
| CD1 | CG1 | H21 | 110.1° | 109.4° |
| CG1 | CD1 | H22 | 109.5° | 109.4° |
| CG1 | CD1 | H23 | 109.5° | 109.4° |
| CG1 | CD1 | H24 | 109.5° | 109.5° |
| CG1 | CB | CG2 | 112.3° | 109.5° |
| CG1 | CB | CA | 107.7° | 109.5° |
| CG1 | CB | H12 | 109.0° | 109.5° |
| CB | CG1 | H20 | 110.1° | 109.5° |
| CB | CG1 | H21 | 110.2° | 109.5° |
| CG2 | CB | CA | 110.9° | 109.5° |
| CG2 | CB | H12 | 108.4° | 109.5° |
| CB | CG2 | H17 | 109.5° | 109.4° |
| CB | CG2 | H18 | 109.5° | 109.5° |
| CB | CG2 | H19 | 109.5° | 109.4° |
| CB | CA | N | 112.0° | 109.5° |
| CB | CA | C | 109.5° | 109.5° |
| CB | CA | H11 | 107.4° | 109.5° |
| CA | CB | H12 | 108.5° | 109.4° |
| CA | N | C4A | 109.6° | 111.0° |
| N | CA | C | 112.5° | 109.4° |
| CA | N | H9 | 109.5° | 111.0° |
| N | CA | H11 | 107.9° | 109.5° |
| N | C4A | C4 | 121.4° | 109.5° |
| N | C4A | H7 | 106.4° | 109.5° |
| N | C4A | H8 | 106.4° | 109.4° |
| C4A | N | H9 | 109.4° | 111.0° |
| O1P | P | O2P | 119.0° | 109.5° |
| O1P | P | O4P | 100.6° | 109.5° |
| O1P | P | O3P | 116.3° | 109.5° |
| C5 | C5A | O4P | 117.9° | 109.5° |
| C5A | C5 | C6 | 117.5° | 120.4° |
| C5A | C5 | C4 | 122.4° | 120.4° |
| C5 | C5A | H1 | 107.3° | 109.5° |
| C5 | C5A | H2 | 107.3° | 109.5° |
| C5A | O4P | P | 118.3° | 123.0° |
| O4P | C5A | H1 | 107.3° | 109.5° |
| O4P | C5A | H2 | 107.3° | 109.5° |
| CA | C | OXT | 119.1° | 120.0° |
| CA | C | O | 116.7° | 120.0° |
| C | CA | H11 | 107.4° | 109.5° |
| O2P | P | O4P | 101.1° | 109.5° |
| O2P | P | O3P | 117.6° | 109.5° |
| P | O2P | H15 | 109.5° | 113.9° |
| C5 | C6 | N1 | 120.0° | 120.8° |
| C6 | C5 | C4 | 119.8° | 119.2° |
| C5 | C6 | H3 | 120.0° | 119.6° |
| C6 | N1 | C2 | 122.0° | 121.8° |
| N1 | C6 | H3 | 120.0° | 119.6° |
| C5 | C4 | C4A | 123.8° | 120.8° |
| C5 | C4 | C3 | 118.9° | 118.4° |
| C4A | C4 | C3 | 116.7° | 120.8° |
| C4 | C4A | H7 | 106.4° | 109.5° |
| C4 | C4A | H8 | 106.4° | 109.5° |
| C4 | C3 | C2 | 120.5° | 119.0° |
| C4 | C3 | O3 | 118.4° | 120.6° |
| N1 | C2 | C3 | 118.6° | 120.6° |
| N1 | C2 | C2A | 121.2° | 119.7° |
| OXT | C | O | 124.2° | 120.0° |
| C | O | H13 | 109.5° | 117.0° |
| O4P | P | O3P | 95.0° | 109.5° |
| P | O3P | H14 | 109.5° | 114.0° |
| C2 | C3 | O3 | 121.0° | 120.4° |
| C3 | C2 | C2A | 120.2° | 119.7° |
| C3 | O3 | H16 | 109.5° | 114.0° |
| C2 | C2A | H4 | 109.5° | 109.5° |
| C2 | C2A | H5 | 109.5° | 109.5° |
| C2 | C2A | H6 | 109.5° | 109.5° |
| H1 | C5A | H2 | 109.4° | 109.4° |
| H4 | C2A | H5 | 109.4° | 109.5° |
| H4 | C2A | H6 | 109.5° | 109.4° |
| H5 | C2A | H6 | 109.5° | 109.4° |
| H7 | C4A | H8 | 109.5° | 109.5° |
| H17 | CG2 | H18 | 109.4° | 109.5° |
| H17 | CG2 | H19 | 109.4° | 109.5° |
| H18 | CG2 | H19 | 109.5° | 109.5° |
| H20 | CG1 | H21 | 109.5° | 109.4° |
| H22 | CD1 | H23 | 109.5° | 109.5° |
| H22 | CD1 | H24 | 109.4° | 109.5° |
| H23 | CD1 | H24 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CD1 | CG1 | CB | H20 | 119.6° | 120.0° |
| CD1 | CG1 | CB | H21 | 119.6° | 120.0° |
| CD1 | CG1 | CB | CG2 | 63.8° | 65.0° |
| CD1 | CG1 | CB | CA | 173.8° | 175.0° |
| CD1 | CG1 | CB | H12 | 56.3° | 55.0° |
| CD1 | CG1 | H20 | H21 | 121.2° | 119.9° |
| CG1 | CD1 | H22 | H23 | 120.0° | 119.9° |
| CG1 | CD1 | H22 | H24 | 120.0° | 120.0° |
| CG1 | CD1 | H23 | H24 | 120.0° | 120.0° |
| CG1 | CB | CG2 | CA | 120.6° | 120.0° |
| CG1 | CB | CG2 | H12 | 120.4° | 120.0° |
| CG1 | CB | CA | H12 | 117.8° | 120.0° |
| CG1 | CB | CA | N | 56.2° | 175.0° |
| CG1 | CB | CA | C | 69.3° | 65.0° |
| CG1 | CB | CA | H11 | 174.5° | 55.0° |
| CG1 | CB | CG2 | H17 | 180.0° | 60.0° |
| CG1 | CB | CG2 | H18 | 60.0° | 60.0° |
| CG1 | CB | CG2 | H19 | 60.0° | 180.0° |
| CB | CG1 | H20 | H21 | 121.2° | 120.0° |
| CB | CG1 | CD1 | H22 | 180.0° | 60.0° |
| CB | CG1 | CD1 | H23 | 60.0° | 60.0° |
| CB | CG1 | CD1 | H24 | 60.0° | 180.0° |
| CG2 | CB | CA | H12 | 118.9° | 120.0° |
| CG2 | CB | CA | N | 67.1° | 65.0° |
| CG2 | CB | CA | C | 167.4° | 55.0° |
| CG2 | CB | CA | H11 | 51.2° | 175.0° |
| CB | CG2 | H17 | H18 | 120.0° | 120.0° |
| CB | CG2 | H17 | H19 | 120.0° | 119.9° |
| CB | CG2 | H18 | H19 | 120.0° | 120.0° |
| CG2 | CB | CG1 | H20 | 176.6° | 55.0° |
| CG2 | CB | CG1 | H21 | 55.8° | 175.0° |
| CB | CA | N | C | 123.8° | 120.0° |
| CB | CA | N | H11 | 118.0° | 120.1° |
| CB | CA | N | C4A | 157.4° | 155.0° |
| CB | CA | C | H11 | 116.2° | 120.1° |
| CB | CA | C | OXT | 122.1° | 120.0° |
| CB | CA | C | O | 59.5° | 60.0° |
| CB | CA | N | H9 | 82.6° | 81.0° |
| CA | CB | CG2 | H17 | 59.4° | 60.0° |
| CA | CB | CG2 | H18 | 60.6° | 180.0° |
| CA | CB | CG2 | H19 | 179.4° | 60.0° |
| CA | CB | CG1 | H20 | 54.2° | 65.0° |
| CA | CB | CG1 | H21 | 66.6° | 55.0° |
| CA | N | C4A | H9 | 120.0° | 124.0° |
| N | CA | C | H11 | 118.6° | 120.0° |
| CA | N | C4A | C4 | 174.0° | 180.0° |
| N | CA | C | OXT | 3.1° | 0.0° |
| N | CA | C | O | 175.3° | 180.0° |
| CA | N | C4A | H7 | 64.4° | 60.0° |
| CA | N | C4A | H8 | 52.3° | 59.9° |
| N | CA | CB | H12 | 174.0° | 55.1° |
| C4A | N | CA | C | 78.8° | 85.0° |
| N | C4A | C4 | C5 | 96.1° | 90.0° |
| N | C4A | C4 | H7 | 121.6° | 120.0° |
| N | C4A | C4 | H8 | 121.6° | 120.0° |
| N | C4A | C4 | C3 | 92.1° | 89.8° |
| N | C4A | H7 | H8 | 114.6° | 120.0° |
| C4A | N | CA | H11 | 39.4° | 34.9° |
| O1P | P | O4P | C5A | 18.0° | 55.0° |
| O1P | P | O2P | O4P | 108.8° | 120.0° |
| O1P | P | O2P | O3P | 149.5° | 120.0° |
| O1P | P | O4P | O3P | 118.0° | 120.0° |
| O1P | P | O3P | H14 | 0.0° | 60.0° |
| O1P | P | O2P | H15 | 0.0° | 180.0° |
| C5 | C5A | O4P | H1 | 121.2° | 120.0° |
| C5 | C5A | O4P | H2 | 121.2° | 120.0° |
| C5A | C5 | C6 | C4 | 173.7° | 179.7° |
| C5A | C5 | C6 | N1 | 176.9° | 180.0° |
| C5A | C5 | C4 | C4A | 10.7° | 0.0° |
| C5A | C5 | C4 | C3 | 177.7° | 179.8° |
| C5 | C5A | O4P | P | 158.0° | 180.0° |
| C5 | C5A | H1 | H2 | 116.2° | 120.0° |
| C5A | C5 | C6 | H3 | 3.1° | 0.1° |
| C5A | O4P | P | O2P | 104.5° | 65.0° |
| O4P | C5A | C5 | C6 | 74.1° | 0.3° |
| O4P | C5A | C5 | C4 | 112.3° | 180.0° |
| C5A | O4P | P | O3P | 136.0° | 175.0° |
| O4P | C5A | H1 | H2 | 116.2° | 120.0° |
| CA | C | OXT | O | 178.3° | 180.0° |
| C | CA | N | H9 | 41.2° | 39.0° |
| C | CA | CB | H12 | 48.5° | 175.0° |
| CA | C | O | H13 | 178.3° | 180.0° |
| O2P | P | O4P | O3P | 119.5° | 120.0° |
| O2P | P | O3P | H14 | 150.3° | 60.0° |
| C5 | C6 | N1 | H3 | 180.0° | 179.9° |
| C6 | C5 | C4 | C4A | 175.9° | 179.7° |
| C6 | C5 | C4 | C3 | 4.3° | 0.5° |
| C5 | C6 | N1 | C2 | 0.1° | 0.0° |
| C6 | C5 | C5A | H1 | 47.1° | 120.3° |
| C6 | C5 | C5A | H2 | 164.7° | 119.7° |
| N1 | C6 | C5 | C4 | 3.1° | 0.3° |
| C6 | N1 | C2 | C3 | 1.7° | 0.0° |
| C6 | N1 | C2 | C2A | 180.0° | 180.0° |
| C5 | C4 | C4A | C3 | 171.8° | 179.8° |
| C5 | C4 | C3 | C2 | 2.4° | 0.5° |
| C5 | C4 | C3 | O3 | 176.5° | 179.8° |
| C4 | C5 | C5A | H1 | 126.4° | 60.0° |
| C4 | C5 | C5A | H2 | 8.9° | 60.0° |
| C4 | C5 | C6 | H3 | 176.9° | 179.8° |
| C5 | C4 | C4A | H7 | 25.5° | 150.0° |
| C5 | C4 | C4A | H8 | 142.3° | 29.9° |
| C4A | C4 | C3 | C2 | 174.6° | 179.7° |
| C4A | C4 | C3 | O3 | 4.3° | 0.1° |
| C4 | C4A | H7 | H8 | 114.6° | 120.0° |
| C4 | C4A | N | H9 | 54.0° | 56.1° |
| C4 | C3 | C2 | N1 | 0.5° | 0.2° |
| C4 | C3 | C2 | O3 | 178.9° | 179.8° |
| C4 | C3 | C2 | C2A | 178.7° | 179.8° |
| C3 | C4 | C4A | H7 | 146.3° | 30.2° |
| C3 | C4 | C4A | H8 | 29.5° | 150.2° |
| C4 | C3 | O3 | H16 | 180.0° | 89.7° |
| N1 | C2 | C3 | C2A | 178.3° | 180.0° |
| N1 | C2 | C3 | O3 | 179.3° | 180.0° |
| C2 | N1 | C6 | H3 | 179.9° | 179.9° |
| N1 | C2 | C2A | H4 | 0.0° | 90.0° |
| N1 | C2 | C2A | H5 | 120.0° | 150.0° |
| N1 | C2 | C2A | H6 | 120.0° | 30.0° |
| OXT | C | CA | H11 | 121.7° | 120.0° |
| OXT | C | O | H13 | 0.0° | 0.0° |
| O | C | CA | H11 | 56.7° | 60.1° |
| P | O4P | C5A | H1 | 80.8° | 60.0° |
| P | O4P | C5A | H2 | 36.8° | 60.0° |
| O4P | P | O3P | H14 | 104.5° | 180.0° |
| O4P | P | O2P | H15 | 108.8° | 60.0° |
| O3P | P | O2P | H15 | 149.5° | 60.0° |
| C3 | C2 | C2A | H4 | 178.2° | 90.0° |
| C3 | C2 | C2A | H5 | 61.8° | 30.0° |
| C3 | C2 | C2A | H6 | 58.2° | 150.0° |
| C2 | C3 | O3 | H16 | 1.1° | 90.0° |
| O3 | C3 | C2 | C2A | 2.4° | 0.0° |
| C2 | C2A | H4 | H5 | 120.0° | 120.1° |
| C2 | C2A | H4 | H6 | 120.0° | 120.0° |
| C2 | C2A | H5 | H6 | 120.0° | 120.0° |
| H4 | C2A | H5 | H6 | 120.0° | 119.9° |
| H7 | C4A | N | H9 | 175.6° | 63.9° |
| H8 | C4A | N | H9 | 67.7° | 176.1° |
| H9 | N | CA | H11 | 159.4° | 158.9° |
| H11 | CA | CB | H12 | 67.7° | 65.0° |
| H12 | CB | CG2 | H17 | 59.6° | 180.0° |
| H12 | CB | CG2 | H18 | 179.6° | 60.0° |
| H12 | CB | CG2 | H19 | 60.4° | 60.0° |
| H12 | CB | CG1 | H20 | 63.3° | 175.0° |
| H12 | CB | CG1 | H21 | 175.9° | 65.0° |
| H17 | CG2 | H18 | H19 | 120.0° | 120.1° |
| H20 | CG1 | CD1 | H22 | 60.4° | 179.9° |
| H20 | CG1 | CD1 | H23 | 59.6° | 60.1° |
| H20 | CG1 | CD1 | H24 | 179.6° | 60.0° |
| H21 | CG1 | CD1 | H22 | 60.4° | 60.0° |
| H21 | CG1 | CD1 | H23 | 179.6° | 180.0° |
| H21 | CG1 | CD1 | H24 | 59.6° | 59.9° |
| H22 | CD1 | H23 | H24 | 120.0° | 120.1° |
