7V5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C5'X | N4' | sing | 1.47Å | 1.48Å | |
| N4' | C3' | sing | 1.47Å | 1.48Å | |
| N4' | C5'A | sing | 1.47Å | 1.48Å | |
| C3' | C2' | sing | 1.53Å | 1.54Å | |
| C2' | C1' | sing | 1.53Å | 1.53Å | |
| C1' | N11 | sing | 1.47Å | 1.47Å | |
| C9 | C9A | sing | 1.39Å | 1.40Å | Aromatic |
| C9 | C8 | doub | 1.38Å | 1.41Å | Aromatic |
| N10 | C9A | sing | 1.38Å | 1.40Å | Aromatic |
| N10 | C10A | sing | 1.39Å | 1.39Å | Aromatic |
| C9A | C6A | doub | 1.40Å | 1.43Å | Aromatic |
| N11 | C11A | sing | 1.39Å | 1.41Å | |
| C8 | C7 | sing | 1.39Å | 1.41Å | Aromatic |
| C10A | C11A | doub | 1.39Å | 1.41Å | Aromatic |
| C10A | C5A | sing | 1.41Å | 1.36Å | Aromatic |
| C11A | C1A | sing | 1.41Å | 1.47Å | Aromatic |
| C6A | C5A | sing | 1.48Å | 1.40Å | Aromatic |
| C6A | C6 | sing | 1.39Å | 1.41Å | Aromatic |
| C5A | N5 | doub | 1.32Å | 1.38Å | Aromatic |
| C7 | C6 | doub | 1.38Å | 1.41Å | Aromatic |
| C1A | C1 | doub | 1.40Å | 1.42Å | Aromatic |
| C1A | C4A | sing | 1.42Å | 1.46Å | Aromatic |
| C1 | C2 | sing | 1.36Å | 1.41Å | Aromatic |
| N5 | C4A | sing | 1.33Å | 1.40Å | Aromatic |
| C4A | C4 | doub | 1.41Å | 1.41Å | Aromatic |
| C2 | C3 | doub | 1.39Å | 1.40Å | Aromatic |
| C4 | C3 | sing | 1.36Å | 1.40Å | Aromatic |
| C4 | H4 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C7 | H7 | sing | 1.08Å | 1.08Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| N5 | H5 | sing | 0.97Å | 1.00Å | |
| C9 | H9 | sing | 1.08Å | 1.08Å | |
| N11 | H11 | sing | 1.01Å | 1.00Å | |
| C1' | H1'A | sing | 1.09Å | 1.10Å | |
| C1' | H1'B | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C2' | H2'B | sing | 1.09Å | 1.10Å | |
| C3' | H3'A | sing | 1.09Å | 1.10Å | |
| C3' | H3'B | sing | 1.09Å | 1.10Å | |
| C5'A | H5'A | sing | 1.09Å | 1.10Å | |
| C5'A | H5'C | sing | 1.09Å | 1.10Å | |
| C5'A | H5'B | sing | 1.09Å | 1.10Å | |
| C5'X | H5XA | sing | 1.09Å | 1.10Å | |
| C5'X | H5XC | sing | 1.09Å | 1.10Å | |
| C5'X | H5XB | sing | 1.09Å | 1.10Å | |
| C1 | H1 | sing | 1.08Å | 1.08Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| H10 | N4' | sing | 1.01Å | 1.00Å | |
| H12 | N10 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5'X | N4' | C3' | 108.1° | 109.5° |
| C5'X | N4' | C5'A | 107.6° | 109.4° |
| N4' | C5'X | H5XA | 109.5° | 109.5° |
| N4' | C5'X | H5XC | 109.4° | 109.5° |
| N4' | C5'X | H5XB | 109.4° | 109.6° |
| C5'X | N4' | H10 | 110.4° | 109.5° |
| C3' | N4' | C5'A | 110.0° | 109.5° |
| N4' | C3' | C2' | 113.5° | 109.5° |
| N4' | C3' | H3'A | 108.5° | 109.5° |
| N4' | C3' | H3'B | 108.5° | 109.5° |
| C3' | N4' | H10 | 110.4° | 109.5° |
| N4' | C5'A | H5'A | 109.5° | 109.5° |
| N4' | C5'A | H5'C | 109.5° | 109.5° |
| N4' | C5'A | H5'B | 109.5° | 109.4° |
| C5'A | N4' | H10 | 110.4° | 109.5° |
| C3' | C2' | C1' | 108.7° | 109.5° |
| C3' | C2' | H2'A | 109.6° | 109.5° |
| C3' | C2' | H2'B | 109.7° | 109.5° |
| C2' | C3' | H3'A | 108.4° | 109.5° |
| C2' | C3' | H3'B | 108.4° | 109.5° |
| C2' | C1' | N11 | 111.7° | 109.5° |
| C2' | C1' | H1'A | 108.9° | 109.5° |
| C2' | C1' | H1'B | 108.9° | 109.5° |
| C1' | C2' | H2'A | 109.7° | 109.5° |
| C1' | C2' | H2'B | 109.6° | 109.5° |
| C1' | N11 | C11A | 125.2° | 111.0° |
| C1' | N11 | H11 | 105.4° | 111.0° |
| N11 | C1' | H1'A | 108.9° | 109.4° |
| N11 | C1' | H1'B | 108.9° | 109.5° |
| C9A | C9 | C8 | 118.6° | 120.0° |
| C9 | C9A | N10 | 135.9° | 132.2° |
| C9 | C9A | C6A | 120.9° | 119.3° |
| C9A | C9 | H9 | 120.7° | 120.0° |
| C9 | C8 | C7 | 120.7° | 120.6° |
| C9 | C8 | H8 | 119.7° | 119.7° |
| C8 | C9 | H9 | 120.7° | 120.0° |
| C9A | N10 | C10A | 110.7° | 110.1° |
| N10 | C9A | C6A | 103.2° | 108.5° |
| C9A | N10 | H12 | 124.6° | 124.9° |
| N10 | C10A | C11A | 134.2° | 132.1° |
| N10 | C10A | C5A | 108.6° | 108.4° |
| C10A | N10 | H12 | 124.7° | 124.9° |
| C9A | C6A | C5A | 110.1° | 106.7° |
| C9A | C6A | C6 | 120.5° | 120.1° |
| N11 | C11A | C10A | 123.0° | 121.0° |
| N11 | C11A | C1A | 121.6° | 121.0° |
| C11A | N11 | H11 | 105.4° | 111.0° |
| C8 | C7 | C6 | 121.2° | 120.2° |
| C8 | C7 | H7 | 119.4° | 119.9° |
| C7 | C8 | H8 | 119.7° | 119.7° |
| C11A | C10A | C5A | 117.1° | 119.4° |
| C10A | C11A | C1A | 115.4° | 118.0° |
| C10A | C5A | C6A | 107.3° | 106.2° |
| C10A | C5A | N5 | 129.5° | 121.3° |
| C11A | C1A | C1 | 118.3° | 121.1° |
| C11A | C1A | C4A | 125.5° | 119.2° |
| C5A | C6A | C6 | 129.4° | 133.2° |
| C6A | C5A | N5 | 123.2° | 132.5° |
| C6A | C6 | C7 | 118.1° | 119.7° |
| C6A | C6 | H6 | 120.9° | 120.1° |
| C5A | N5 | C4A | 118.9° | 121.7° |
| C5A | N5 | H5 | 120.5° | 119.1° |
| C7 | C6 | H6 | 120.9° | 120.1° |
| C6 | C7 | H7 | 119.5° | 119.9° |
| C1 | C1A | C4A | 116.3° | 119.6° |
| C1A | C1 | C2 | 121.8° | 119.7° |
| C1A | C1 | H1 | 119.1° | 120.2° |
| C1A | C4A | N5 | 113.6° | 120.3° |
| C1A | C4A | C4 | 120.6° | 119.0° |
| C1 | C2 | C3 | 120.8° | 120.8° |
| C2 | C1 | H1 | 119.1° | 120.1° |
| C1 | C2 | H2 | 119.6° | 119.6° |
| N5 | C4A | C4 | 125.8° | 120.7° |
| C4A | N5 | H5 | 120.6° | 119.2° |
| C4A | C4 | C3 | 121.0° | 119.8° |
| C4A | C4 | H4 | 119.5° | 120.1° |
| C2 | C3 | C4 | 119.5° | 121.1° |
| C2 | C3 | H3 | 120.3° | 119.5° |
| C3 | C2 | H2 | 119.6° | 119.6° |
| C3 | C4 | H4 | 119.5° | 120.1° |
| C4 | C3 | H3 | 120.2° | 119.5° |
| H1'A | C1' | H1'B | 109.5° | 109.5° |
| H2'A | C2' | H2'B | 109.5° | 109.5° |
| H3'A | C3' | H3'B | 109.5° | 109.5° |
| H5'A | C5'A | H5'C | 109.5° | 109.5° |
| H5'A | C5'A | H5'B | 109.4° | 109.5° |
| H5'C | C5'A | H5'B | 109.5° | 109.5° |
| H5XA | C5'X | H5XC | 109.5° | 109.5° |
| H5XA | C5'X | H5XB | 109.5° | 109.4° |
| H5XC | C5'X | H5XB | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C5'X | N4' | C3' | C5'A | 117.2° | 119.9° |
| C5'X | N4' | C3' | H10 | 120.8° | 120.1° |
| C5'X | N4' | C5'A | H10 | 120.5° | 120.1° |
| C5'X | N4' | C3' | C2' | 169.6° | 175.0° |
| C5'X | N4' | C3' | H3'A | 49.1° | 65.0° |
| C5'X | N4' | C3' | H3'B | 69.8° | 55.0° |
| C5'X | N4' | C5'A | H5'A | 180.0° | 60.0° |
| C5'X | N4' | C5'A | H5'C | 60.0° | 60.0° |
| C5'X | N4' | C5'A | H5'B | 60.0° | 179.9° |
| N4' | C5'X | H5XA | H5XC | 120.0° | 120.0° |
| N4' | C5'X | H5XA | H5XB | 120.0° | 120.1° |
| N4' | C5'X | H5XC | H5XB | 120.0° | 120.1° |
| C3' | N4' | C5'A | H10 | 122.0° | 120.0° |
| N4' | C3' | C2' | H3'A | 120.6° | 120.0° |
| N4' | C3' | C2' | H3'B | 120.6° | 120.0° |
| N4' | C3' | C2' | C1' | 177.4° | 180.0° |
| N4' | C3' | C2' | H2'A | 62.8° | 60.0° |
| N4' | C3' | C2' | H2'B | 57.5° | 60.0° |
| N4' | C3' | H3'A | H3'B | 118.2° | 120.0° |
| C3' | N4' | C5'A | H5'A | 62.5° | 59.9° |
| C3' | N4' | C5'A | H5'C | 57.5° | 180.0° |
| C3' | N4' | C5'A | H5'B | 177.5° | 60.0° |
| C3' | N4' | C5'X | H5XA | 180.0° | 60.0° |
| C3' | N4' | C5'X | H5XC | 60.0° | 180.0° |
| C3' | N4' | C5'X | H5XB | 60.0° | 59.9° |
| C5'A | N4' | C3' | C2' | 73.2° | 65.0° |
| C5'A | N4' | C3' | H3'A | 166.2° | 55.0° |
| C5'A | N4' | C3' | H3'B | 47.4° | 175.0° |
| N4' | C5'A | H5'A | H5'C | 120.0° | 120.0° |
| N4' | C5'A | H5'A | H5'B | 120.0° | 119.9° |
| N4' | C5'A | H5'C | H5'B | 120.0° | 119.9° |
| C5'A | N4' | C5'X | H5XA | 61.2° | 180.0° |
| C5'A | N4' | C5'X | H5XC | 58.8° | 60.0° |
| C5'A | N4' | C5'X | H5XB | 178.8° | 60.0° |
| C3' | C2' | C1' | H2'A | 119.9° | 120.0° |
| C3' | C2' | C1' | H2'B | 119.9° | 120.0° |
| C3' | C2' | C1' | N11 | 172.7° | 180.0° |
| C3' | C2' | C1' | H1'A | 52.3° | 60.0° |
| C3' | C2' | C1' | H1'B | 67.0° | 60.0° |
| C3' | C2' | H2'A | H2'B | 120.4° | 120.0° |
| C2' | C3' | H3'A | H3'B | 118.1° | 120.0° |
| C2' | C3' | N4' | H10 | 48.9° | 55.0° |
| C2' | C1' | N11 | H1'A | 120.3° | 120.0° |
| C2' | C1' | N11 | H1'B | 120.3° | 120.1° |
| C2' | C1' | N11 | C11A | 178.0° | 174.9° |
| C2' | C1' | N11 | H11 | 56.0° | 61.1° |
| C2' | C1' | H1'A | H1'B | 119.0° | 120.0° |
| C1' | C2' | H2'A | H2'B | 120.3° | 120.0° |
| C1' | C2' | C3' | H3'A | 56.8° | 60.0° |
| C1' | C2' | C3' | H3'B | 62.0° | 60.0° |
| C1' | N11 | C11A | H11 | 122.1° | 124.0° |
| C1' | N11 | C11A | C10A | 0.1° | 84.0° |
| C1' | N11 | C11A | C1A | 179.2° | 95.9° |
| N11 | C1' | H1'A | H1'B | 119.0° | 120.0° |
| N11 | C1' | C2' | H2'A | 67.4° | 60.0° |
| N11 | C1' | C2' | H2'B | 52.8° | 59.9° |
| C9A | C9 | C8 | H9 | 180.0° | 180.0° |
| C9 | C9A | N10 | C6A | 179.9° | 180.0° |
| C9 | C9A | N10 | C10A | 179.2° | 180.0° |
| C9A | C9 | C8 | C7 | 0.7° | 0.0° |
| C9 | C9A | C6A | C5A | 179.5° | 180.0° |
| C9 | C9A | C6A | C6 | 1.1° | 0.0° |
| C9A | C9 | C8 | H8 | 179.3° | 179.9° |
| C9 | C9A | N10 | H12 | 0.8° | 0.0° |
| C8 | C9 | C9A | N10 | 178.4° | 180.0° |
| C8 | C9 | C9A | C6A | 1.4° | 0.0° |
| C9 | C8 | C7 | H8 | 180.0° | 180.0° |
| C9 | C8 | C7 | C6 | 0.4° | 0.0° |
| C9 | C8 | C7 | H7 | 179.6° | 180.0° |
| C9A | N10 | C10A | H12 | 180.0° | 180.0° |
| C9A | N10 | C10A | C11A | 177.0° | 180.0° |
| C9A | N10 | C10A | C5A | 1.7° | 0.0° |
| N10 | C9A | C6A | C5A | 0.6° | 0.0° |
| N10 | C9A | C6A | C6 | 178.8° | 180.0° |
| N10 | C9A | C9 | H9 | 1.6° | 0.0° |
| C10A | N10 | C9A | C6A | 0.7° | 0.0° |
| N10 | C10A | C11A | N11 | 0.7° | 0.0° |
| N10 | C10A | C11A | C5A | 178.6° | 180.0° |
| N10 | C10A | C11A | C1A | 179.8° | 180.0° |
| N10 | C10A | C5A | C6A | 2.0° | 0.0° |
| N10 | C10A | C5A | N5 | 178.6° | 180.0° |
| C9A | C6A | C5A | C10A | 1.6° | 0.0° |
| C9A | C6A | C5A | C6 | 179.3° | 180.0° |
| C9A | C6A | C5A | N5 | 178.9° | 180.0° |
| C9A | C6A | C6 | C7 | 0.0° | 0.0° |
| C9A | C6A | C6 | H6 | 180.0° | 180.0° |
| C6A | C9A | C9 | H9 | 178.6° | 180.0° |
| C6A | C9A | N10 | H12 | 179.3° | 180.0° |
| N11 | C11A | C10A | C1A | 179.1° | 179.9° |
| N11 | C11A | C10A | C5A | 177.9° | 180.0° |
| N11 | C11A | C1A | C1 | 0.6° | 0.0° |
| N11 | C11A | C1A | C4A | 179.4° | 180.0° |
| C11A | N11 | C1' | H1'A | 61.6° | 65.1° |
| C11A | N11 | C1' | H1'B | 57.7° | 54.8° |
| C8 | C7 | C6 | C6A | 0.7° | 0.0° |
| C8 | C7 | C6 | H7 | 180.0° | 180.0° |
| C8 | C7 | C6 | H6 | 179.3° | 180.0° |
| C7 | C8 | C9 | H9 | 179.3° | 180.0° |
| C11A | C10A | C5A | C6A | 177.0° | 180.0° |
| C11A | C10A | C5A | N5 | 2.5° | 0.0° |
| C10A | C11A | C1A | C1 | 178.5° | 180.0° |
| C10A | C11A | C1A | C4A | 1.5° | 0.1° |
| C10A | C11A | N11 | H11 | 121.9° | 40.0° |
| C11A | C10A | N10 | H12 | 3.0° | 0.0° |
| C5A | C10A | C11A | C1A | 1.2° | 0.0° |
| C10A | C5A | C6A | N5 | 179.5° | 180.0° |
| C10A | C5A | C6A | C6 | 177.7° | 180.0° |
| C10A | C5A | N5 | C4A | 0.8° | 0.0° |
| C10A | C5A | N5 | H5 | 179.2° | 179.9° |
| C5A | C10A | N10 | H12 | 178.3° | 180.0° |
| C11A | C1A | C1 | C4A | 180.0° | 179.9° |
| C11A | C1A | C1 | C2 | 178.4° | 179.7° |
| C11A | C1A | C4A | N5 | 3.0° | 0.1° |
| C11A | C1A | C4A | C4 | 177.7° | 180.0° |
| C1A | C11A | N11 | H11 | 57.1° | 140.0° |
| C11A | C1A | C1 | H1 | 1.5° | 0.1° |
| C5A | C6A | C6 | C7 | 179.2° | 180.0° |
| C6A | C5A | N5 | C4A | 178.6° | 180.0° |
| C5A | C6A | C6 | H6 | 0.8° | 0.0° |
| C6A | C5A | N5 | H5 | 1.5° | 0.1° |
| C6 | C6A | C5A | N5 | 1.8° | 0.0° |
| C6A | C6 | C7 | H6 | 180.0° | 179.9° |
| C6A | C6 | C7 | H7 | 179.3° | 180.0° |
| C5A | N5 | C4A | C1A | 1.8° | 0.1° |
| C5A | N5 | C4A | H5 | 180.0° | 179.9° |
| C5A | N5 | C4A | C4 | 178.9° | 180.0° |
| C6 | C7 | C8 | H8 | 179.6° | 180.0° |
| C1A | C1 | C2 | H1 | 180.0° | 179.8° |
| C1 | C1A | C4A | N5 | 177.0° | 180.0° |
| C1 | C1A | C4A | C4 | 2.3° | 0.0° |
| C1A | C1 | C2 | C3 | 0.3° | 0.6° |
| C1A | C1 | C2 | H2 | 179.7° | 180.0° |
| C4A | C1A | C1 | C2 | 1.6° | 0.4° |
| C1A | C4A | N5 | C4 | 179.3° | 179.9° |
| C1A | C4A | C4 | C3 | 1.3° | 0.0° |
| C1A | C4A | C4 | H4 | 178.7° | 179.8° |
| C1A | C4A | N5 | H5 | 178.2° | 180.0° |
| C4A | C1A | C1 | H1 | 178.5° | 179.9° |
| C1 | C2 | C3 | H2 | 180.0° | 179.4° |
| C1 | C2 | C3 | C4 | 1.4° | 0.6° |
| C1 | C2 | C3 | H3 | 178.6° | 179.4° |
| N5 | C4A | C4 | C3 | 178.0° | 179.9° |
| N5 | C4A | C4 | H4 | 2.0° | 0.3° |
| C4A | C4 | C3 | C2 | 0.6° | 0.3° |
| C4A | C4 | C3 | H4 | 180.0° | 179.8° |
| C4A | C4 | C3 | H3 | 179.4° | 179.7° |
| C4 | C4A | N5 | H5 | 1.1° | 0.1° |
| C2 | C3 | C4 | H3 | 180.0° | 180.0° |
| C2 | C3 | C4 | H4 | 179.4° | 180.0° |
| C3 | C2 | C1 | H1 | 179.7° | 179.6° |
| C4 | C3 | C2 | H2 | 178.6° | 180.0° |
| H4 | C4 | C3 | H3 | 0.6° | 0.0° |
| H6 | C6 | C7 | H7 | 0.7° | 0.1° |
| H7 | C7 | C8 | H8 | 0.4° | 0.1° |
| H8 | C8 | C9 | H9 | 0.7° | 0.0° |
| H3 | C3 | C2 | H2 | 1.4° | 0.0° |
| H11 | N11 | C1' | H1'A | 176.3° | 58.9° |
| H11 | N11 | C1' | H1'B | 64.4° | 178.9° |
| H1'A | C1' | C2' | H2'A | 172.2° | 180.0° |
| H1'A | C1' | C2' | H2'B | 67.5° | 60.0° |
| H1'B | C1' | C2' | H2'A | 52.9° | 60.0° |
| H1'B | C1' | C2' | H2'B | 173.1° | 180.0° |
| H2'A | C2' | C3' | H3'A | 176.7° | 180.0° |
| H2'A | C2' | C3' | H3'B | 57.8° | 60.0° |
| H2'B | C2' | C3' | H3'A | 63.1° | 60.0° |
| H2'B | C2' | C3' | H3'B | 178.1° | 180.0° |
| H3'A | C3' | N4' | H10 | 71.7° | 175.0° |
| H3'B | C3' | N4' | H10 | 169.5° | 65.1° |
| H5'A | C5'A | H5'C | H5'B | 120.0° | 120.1° |
| H5'A | C5'A | N4' | H10 | 59.5° | 179.9° |
| H5'C | C5'A | N4' | H10 | 179.5° | 60.0° |
| H5'B | C5'A | N4' | H10 | 60.5° | 60.0° |
| H5XA | C5'X | H5XC | H5XB | 120.0° | 119.9° |
| H5XA | C5'X | N4' | H10 | 59.3° | 60.0° |
| H5XC | C5'X | N4' | H10 | 179.3° | 60.0° |
| H5XB | C5'X | N4' | H10 | 60.7° | 180.0° |
| H1 | C1 | C2 | H2 | 0.3° | 0.2° |
