7TE
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C4' | O4' | sing | 1.44Å | 1.56Å | |
C4' | C3' | sing | 1.55Å | 1.59Å | |
O4' | C1' | sing | 1.44Å | 1.35Å | |
O3' | C3' | sing | 1.43Å | 1.47Å | |
O3' | CP | sing | 1.43Å | 1.41Å | |
O1P | P | doub | 1.48Å | 1.45Å | |
C2 | N3 | doub | 1.32Å | 1.33Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.35Å | Aromatic |
N3 | C4 | sing | 1.33Å | 1.35Å | Aromatic |
N1 | C6 | doub | 1.33Å | 1.32Å | Aromatic |
C3' | C2' | sing | 1.55Å | 1.34Å | |
C1' | N9 | sing | 1.47Å | 1.42Å | |
C1' | C2' | sing | 1.54Å | 1.50Å | |
C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
C4 | C5 | doub | 1.41Å | 1.38Å | Aromatic |
C6 | C5 | sing | 1.41Å | 1.44Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.46Å | |
N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
C5 | N7 | sing | 1.35Å | 1.38Å | Aromatic |
P | CP | sing | 1.82Å | 1.86Å | |
P | O2P | sing | 1.61Å | 1.64Å | |
C8 | N7 | doub | 1.30Å | 1.35Å | Aromatic |
C2' | O2' | sing | 1.43Å | 1.45Å | |
C1' | H1 | sing | 1.09Å | 1.10Å | |
C2 | H2 | sing | 1.08Å | 1.08Å | |
C2' | H3 | sing | 1.09Å | 1.10Å | |
C3' | H4 | sing | 1.09Å | 1.10Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C4' | H6 | sing | 1.09Å | 1.10Å | |
C8 | H7 | sing | 1.08Å | 1.08Å | |
CP | H8 | sing | 1.09Å | 1.10Å | |
CP | H9 | sing | 1.09Å | 1.10Å | |
N6 | H10 | sing | 0.97Å | 1.00Å | |
N6 | H11 | sing | 0.97Å | 1.00Å | |
O2' | H12 | sing | 0.97Å | 0.95Å | |
O2P | H13 | sing | 0.97Å | 0.95Å | |
P | O3P | sing | 1.61Å | 238.18Å | |
O3P | H14 | sing | 0.97Å | 236.87Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O4' | C4' | C3' | 98.5° | 103.5° |
C4' | O4' | C1' | 105.5° | 106.9° |
O4' | C4' | H5 | 112.1° | 110.6° |
O4' | C4' | H6 | 112.1° | 110.6° |
C4' | C3' | O3' | 104.2° | 111.0° |
C4' | C3' | C2' | 104.1° | 102.1° |
C4' | C3' | H4 | 109.2° | 110.9° |
C3' | C4' | H5 | 112.1° | 110.6° |
C3' | C4' | H6 | 112.1° | 110.6° |
O4' | C1' | N9 | 104.1° | 109.9° |
O4' | C1' | C2' | 109.2° | 107.3° |
O4' | C1' | H1 | 110.6° | 110.0° |
C3' | O3' | CP | 115.6° | 114.0° |
O3' | C3' | C2' | 115.0° | 110.9° |
O3' | C3' | H4 | 110.8° | 110.8° |
O3' | CP | P | 108.5° | 109.5° |
O3' | CP | H8 | 109.7° | 109.5° |
O3' | CP | H9 | 109.7° | 109.5° |
O1P | P | CP | 118.4° | 109.5° |
O1P | P | O2P | 124.9° | 109.4° |
O1P | P | O3P | 101.6° | 109.5° |
N3 | C2 | N1 | 122.3° | 122.5° |
C2 | N3 | C4 | 120.8° | 120.6° |
N3 | C2 | H2 | 118.8° | 118.7° |
C2 | N1 | C6 | 119.3° | 121.2° |
N1 | C2 | H2 | 118.9° | 118.8° |
N3 | C4 | N9 | 132.4° | 134.9° |
N3 | C4 | C5 | 119.7° | 119.1° |
N1 | C6 | C5 | 120.6° | 118.4° |
N1 | C6 | N6 | 117.9° | 120.8° |
C3' | C2' | C1' | 109.0° | 104.1° |
C3' | C2' | O2' | 107.4° | 110.5° |
C3' | C2' | H3 | 111.3° | 110.6° |
C2' | C3' | H4 | 112.9° | 110.9° |
N9 | C1' | C2' | 114.9° | 109.9° |
C1' | N9 | C4 | 125.1° | 126.3° |
C1' | N9 | C8 | 127.0° | 126.2° |
N9 | C1' | H1 | 109.5° | 109.9° |
C1' | C2' | O2' | 110.6° | 110.4° |
C2' | C1' | H1 | 108.4° | 109.9° |
C1' | C2' | H3 | 108.9° | 110.5° |
N9 | C4 | C5 | 107.8° | 106.0° |
C4 | N9 | C8 | 107.8° | 107.5° |
C4 | C5 | C6 | 117.3° | 118.2° |
C4 | C5 | N7 | 107.3° | 107.1° |
C5 | C6 | N6 | 121.5° | 120.8° |
C6 | C5 | N7 | 135.5° | 134.7° |
C6 | N6 | H10 | 109.5° | 120.0° |
C6 | N6 | H11 | 109.5° | 120.0° |
N9 | C8 | N7 | 109.1° | 109.9° |
N9 | C8 | H7 | 125.5° | 125.1° |
C5 | N7 | C8 | 107.9° | 109.5° |
CP | P | O2P | 114.1° | 109.5° |
P | CP | H8 | 109.7° | 109.5° |
P | CP | H9 | 109.7° | 109.5° |
CP | P | O3P | 110.5° | 109.5° |
P | O2P | H13 | 109.5° | 114.0° |
O2P | P | O3P | 74.1° | 109.5° |
N7 | C8 | H7 | 125.4° | 125.0° |
O2' | C2' | H3 | 109.6° | 110.5° |
C2' | O2' | H12 | 109.5° | 114.0° |
H5 | C4' | H6 | 109.5° | 110.7° |
H8 | CP | H9 | 109.5° | 109.5° |
H10 | N6 | H11 | 109.4° | 120.0° |
P | O3P | H14 | 0.1° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O4' | C4' | C3' | H5 | 118.2° | 118.5° |
O4' | C4' | C3' | H6 | 118.2° | 118.5° |
O4' | C4' | C3' | O3' | 85.1° | 81.2° |
O4' | C4' | C3' | C2' | 35.7° | 37.0° |
C4' | O4' | C1' | N9 | 142.6° | 146.0° |
C4' | O4' | C1' | C2' | 19.4° | 26.5° |
C4' | O4' | C1' | H1 | 99.8° | 93.0° |
O4' | C4' | C3' | H4 | 156.5° | 155.2° |
O4' | C4' | H5 | H6 | 125.2° | 123.0° |
C3' | C4' | O4' | C1' | 32.8° | 40.1° |
C4' | C3' | O3' | C2' | 113.2° | 112.8° |
C4' | C3' | O3' | H4 | 117.3° | 123.6° |
C4' | C3' | O3' | CP | 167.2° | 97.2° |
C4' | C3' | C2' | H4 | 118.3° | 118.2° |
C4' | C3' | C2' | C1' | 26.3° | 20.9° |
C4' | C3' | C2' | O2' | 93.5° | 97.8° |
C4' | C3' | C2' | H3 | 146.5° | 139.6° |
C3' | C4' | H5 | H6 | 125.1° | 122.9° |
O4' | C1' | C2' | C3' | 5.0° | 2.1° |
O4' | C1' | N9 | C2' | 119.4° | 117.9° |
O4' | C1' | N9 | H1 | 118.3° | 121.1° |
O4' | C1' | C2' | H1 | 120.6° | 119.6° |
O4' | C1' | N9 | C4 | 89.5° | 157.1° |
O4' | C1' | N9 | C8 | 86.7° | 22.8° |
O4' | C1' | C2' | O2' | 112.9° | 120.7° |
O4' | C1' | C2' | H3 | 126.6° | 116.8° |
C1' | O4' | C4' | H5 | 150.9° | 78.4° |
C1' | O4' | C4' | H6 | 85.4° | 158.5° |
O3' | C3' | C2' | H4 | 128.5° | 123.5° |
O3' | C3' | C2' | C1' | 86.9° | 97.4° |
C3' | O3' | CP | P | 142.2° | 75.0° |
O3' | C3' | C2' | O2' | 153.2° | 144.0° |
O3' | C3' | C2' | H3 | 33.2° | 21.3° |
O3' | C3' | C4' | H5 | 33.0° | 160.3° |
O3' | C3' | C4' | H6 | 156.7° | 37.3° |
C3' | O3' | CP | H8 | 22.4° | 165.0° |
C3' | O3' | CP | H9 | 97.9° | 45.0° |
O3' | CP | P | O1P | 44.0° | 60.0° |
CP | O3' | C3' | C2' | 54.0° | 150.0° |
O3' | CP | P | H8 | 119.8° | 120.0° |
O3' | CP | P | H9 | 119.8° | 120.0° |
O3' | CP | P | O2P | 153.6° | 180.0° |
CP | O3' | C3' | H4 | 75.5° | 26.4° |
O3' | CP | H8 | H9 | 120.4° | 120.0° |
O3' | CP | P | O3P | 72.5° | 60.0° |
O1P | P | CP | O2P | 162.4° | 120.0° |
O1P | P | CP | O3P | 116.5° | 120.0° |
O1P | P | O2P | O3P | 93.2° | 120.0° |
O1P | P | CP | H8 | 75.9° | 60.0° |
O1P | P | CP | H9 | 163.8° | 180.0° |
O1P | P | O2P | H13 | 0.0° | 60.0° |
O1P | P | O3P | H14 | 77.9° | 180.0° |
N3 | C2 | N1 | H2 | 180.0° | 179.7° |
N3 | C2 | N1 | C6 | 0.3° | 0.0° |
C2 | N3 | C4 | N9 | 178.5° | 180.0° |
C2 | N3 | C4 | C5 | 1.3° | 0.0° |
N1 | C2 | N3 | C4 | 0.7° | 0.0° |
C2 | N1 | C6 | C5 | 0.5° | 0.0° |
C2 | N1 | C6 | N6 | 179.9° | 180.0° |
N3 | C4 | N9 | C1' | 3.9° | 0.0° |
N3 | C4 | N9 | C5 | 177.5° | 180.0° |
N3 | C4 | C5 | C6 | 1.4° | 0.0° |
N3 | C4 | N9 | C8 | 179.3° | 180.0° |
N3 | C4 | C5 | N7 | 179.6° | 180.0° |
C4 | N3 | C2 | H2 | 179.3° | 179.7° |
N1 | C6 | C5 | C4 | 1.1° | 0.0° |
N1 | C6 | C5 | N6 | 179.5° | 180.0° |
N1 | C6 | C5 | N7 | 179.7° | 180.0° |
C6 | N1 | C2 | H2 | 179.6° | 179.7° |
N1 | C6 | N6 | H10 | 0.0° | 180.0° |
N1 | C6 | N6 | H11 | 120.0° | 0.1° |
C3' | C2' | C1' | N9 | 111.5° | 121.5° |
C3' | C2' | C1' | O2' | 117.9° | 118.6° |
C3' | C2' | C1' | H3 | 121.6° | 118.8° |
C3' | C2' | O2' | H3 | 121.1° | 122.8° |
C3' | C2' | C1' | H1 | 125.5° | 117.5° |
C2' | C3' | C4' | H5 | 153.8° | 81.5° |
C2' | C3' | C4' | H6 | 82.5° | 155.5° |
C3' | C2' | O2' | H12 | 180.0° | 65.3° |
N9 | C1' | C2' | H1 | 122.9° | 121.0° |
C1' | N9 | C4 | C8 | 176.8° | 180.0° |
C1' | N9 | C4 | C5 | 178.6° | 179.9° |
C1' | N9 | C8 | N7 | 177.9° | 180.0° |
N9 | C1' | C2' | O2' | 130.6° | 119.9° |
N9 | C1' | C2' | H3 | 10.1° | 2.7° |
C1' | N9 | C8 | H7 | 2.0° | 0.1° |
C2' | C1' | N9 | C4 | 151.2° | 85.0° |
C2' | C1' | N9 | C8 | 32.7° | 95.0° |
C1' | C2' | O2' | H3 | 120.1° | 122.5° |
C1' | C2' | C3' | H4 | 144.6° | 139.1° |
C1' | C2' | O2' | H12 | 61.2° | 180.0° |
N9 | C4 | C5 | C6 | 179.3° | 180.0° |
N9 | C4 | C5 | N7 | 1.8° | 0.0° |
C4 | N9 | C8 | N7 | 1.2° | 0.0° |
C4 | N9 | C1' | H1 | 28.9° | 36.0° |
C4 | N9 | C8 | H7 | 178.7° | 180.0° |
C4 | C5 | C6 | N7 | 178.6° | 180.0° |
C4 | C5 | C6 | N6 | 179.4° | 180.0° |
C5 | C4 | N9 | C8 | 1.9° | 0.0° |
C4 | C5 | N7 | C8 | 1.0° | 0.0° |
C6 | C5 | N7 | C8 | 179.7° | 180.0° |
C5 | C6 | N6 | H10 | 179.6° | 0.0° |
C5 | C6 | N6 | H11 | 60.5° | 179.9° |
N6 | C6 | C5 | N7 | 0.8° | 0.0° |
C6 | N6 | H10 | H11 | 120.0° | 179.9° |
N9 | C8 | N7 | C5 | 0.1° | 0.0° |
N9 | C8 | N7 | H7 | 180.0° | 180.0° |
C8 | N9 | C1' | H1 | 155.0° | 143.9° |
C5 | N7 | C8 | H7 | 179.8° | 180.0° |
CP | P | O2P | O3P | 105.7° | 120.0° |
P | CP | H8 | H9 | 120.5° | 120.0° |
CP | P | O2P | H13 | 161.1° | 180.0° |
CP | P | O3P | H14 | 48.5° | 60.0° |
O2P | P | CP | H8 | 86.6° | 60.0° |
O2P | P | CP | H9 | 33.8° | 60.0° |
O2P | P | O3P | H14 | 158.8° | 60.1° |
O2' | C2' | C1' | H1 | 7.7° | 1.1° |
O2' | C2' | C3' | H4 | 24.8° | 20.5° |
H1 | C1' | C2' | H3 | 112.9° | 123.6° |
H3 | C2' | C3' | H4 | 95.3° | 102.2° |
H3 | C2' | O2' | H12 | 58.9° | 57.4° |
H4 | C3' | C4' | H5 | 85.4° | 36.8° |
H4 | C3' | C4' | H6 | 38.3° | 86.3° |
H8 | CP | P | O3P | 167.7° | 180.0° |
H9 | CP | P | O3P | 47.4° | 60.0° |
H13 | O2P | P | O3P | 93.2° | 60.0° |