7SN

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N2	C2	sing	1.37Å	1.34Å
C2	N1	sing	1.36Å	1.37Å
C2	N3	doub	1.31Å	1.32Å
N1	C6	sing	1.35Å	1.39Å
N3	C4	sing	1.34Å	1.35Å
C6	O6	doub	1.22Å	1.24Å
C6	C5	sing	1.41Å	1.43Å
C4	C5	doub	1.40Å	1.38Å	Aromatic
C4	N9	sing	1.37Å	1.38Å	Aromatic
C5	C7	sing	1.47Å	1.39Å	Aromatic
C1'	N9	sing	1.47Å	1.48Å
C1'	O4'	sing	1.44Å	1.41Å
C1'	C2'	sing	1.54Å	1.53Å
N9	C8	sing	1.36Å	1.37Å	Aromatic
O4'	C4'	sing	1.44Å	1.45Å
C7	C8	doub	1.36Å	1.31Å	Aromatic
C7	CA7	sing	1.48Å	1.48Å
O2'	C2'	sing	1.43Å	1.42Å
N71	CA7	doub	1.31Å	1.34Å
CA7	N72	sing	1.38Å	1.34Å
C2'	C3'	sing	1.55Å	1.53Å
C4'	C5'	sing	1.53Å	1.51Å
C4'	C3'	sing	1.54Å	1.52Å
C5'	O5'	sing	1.43Å	1.42Å
C3'	O3'	sing	1.43Å	1.42Å
O5'	P	sing	1.61Å	1.59Å
P	OP2	sing	1.61Å	1.48Å
P	OP1	doub	1.48Å	1.49Å
N2	H1	sing	0.97Å	1.00Å
N2	H2	sing	0.97Å	1.00Å
C8	H3	sing	1.08Å	1.08Å
N1	H4	sing	0.97Å	1.00Å
C1'	H5	sing	1.09Å	1.10Å
C2'	H6	sing	1.09Å	1.10Å
C3'	H7	sing	1.09Å	1.10Å
C4'	H8	sing	1.09Å	1.10Å
C5'	H9	sing	1.09Å	1.10Å
C5'	H10	sing	1.09Å	1.10Å
N71	H11	sing	0.97Å	1.00Å
N72	H12	sing	0.97Å	1.00Å
N72	H13	sing	0.97Å	1.00Å
O2'	H14	sing	0.97Å	0.95Å
O3'	H15	sing	0.97Å	0.95Å
OP2	H17	sing	0.97Å	0.95Å
P	OP3	sing	1.61Å	1.61Å
OP3	H16	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N2	C2	N1	116.2°	119.0°
N2	C2	N3	119.9°	118.9°
C2	N2	H1	120.0°	120.0°
C2	N2	H2	120.0°	120.0°
N1	C2	N3	124.0°	122.1°
C2	N1	C6	124.5°	120.1°
C2	N1	H4	117.7°	120.0°
C2	N3	C4	112.9°	121.2°
N1	C6	O6	118.6°	120.9°
N1	C6	C5	112.0°	118.2°
C6	N1	H4	117.8°	119.9°
N3	C4	C5	127.9°	119.1°
N3	C4	N9	126.1°	133.3°
O6	C6	C5	129.4°	120.9°
C6	C5	C4	118.7°	119.2°
C6	C5	C7	131.6°	134.6°
C5	C4	N9	106.0°	107.5°
C4	C5	C7	109.8°	106.2°
C4	N9	C1'	126.7°	124.8°
C4	N9	C8	106.1°	110.5°
C5	C7	C8	105.3°	106.3°
C5	C7	CA7	131.5°	126.9°
N9	C1'	O4'	108.8°	110.3°
N9	C1'	C2'	112.8°	110.4°
C1'	N9	C8	127.3°	124.7°
N9	C1'	H5	108.9°	110.3°
O4'	C1'	C2'	108.0°	104.8°
C1'	O4'	C4'	110.6°	105.2°
O4'	C1'	H5	109.9°	110.3°
C1'	C2'	O2'	108.7°	110.5°
C1'	C2'	C3'	102.6°	104.1°
C2'	C1'	H5	108.3°	110.5°
C1'	C2'	H6	111.0°	110.5°
N9	C8	C7	112.8°	109.5°
N9	C8	H3	123.6°	125.2°
O4'	C4'	C5'	110.3°	110.4°
O4'	C4'	C3'	104.9°	104.8°
O4'	C4'	H8	109.4°	110.5°
C8	C7	CA7	123.2°	126.8°
C7	C8	H3	123.6°	125.3°
C7	CA7	N71	119.1°	120.0°
C7	CA7	N72	120.6°	120.0°
O2'	C2'	C3'	110.4°	110.5°
O2'	C2'	H6	112.8°	110.6°
C2'	O2'	H14	109.5°	114.0°
N71	CA7	N72	120.3°	120.0°
CA7	N71	H11	112.0°	120.0°
CA7	N72	H12	120.0°	120.0°
CA7	N72	H13	120.0°	120.1°
C2'	C3'	C4'	103.5°	104.1°
C2'	C3'	O3'	112.4°	110.5°
C3'	C2'	H6	111.0°	110.5°
C2'	C3'	H7	109.6°	110.5°
C5'	C4'	C3'	115.2°	110.4°
C4'	C5'	O5'	110.7°	109.5°
C5'	C4'	H8	108.5°	110.3°
C4'	C5'	H9	109.2°	109.5°
C4'	C5'	H10	109.2°	109.5°
C4'	C3'	O3'	110.3°	110.5°
C4'	C3'	H7	109.7°	110.6°
C3'	C4'	H8	108.4°	110.3°
C5'	O5'	P	121.8°	123.0°
O5'	C5'	H9	109.2°	109.5°
O5'	C5'	H10	109.2°	109.5°
O3'	C3'	H7	111.1°	110.4°
C3'	O3'	H15	109.5°	114.0°
O5'	P	OP2	105.4°	109.5°
O5'	P	OP1	109.1°	109.5°
O5'	P	OP3	104.9°	109.4°
OP2	P	OP1	119.0°	109.5°
P	OP2	H17	109.5°	114.0°
OP2	P	OP3	109.9°	109.5°
OP1	P	OP3	107.7°	109.5°
H1	N2	H2	120.0°	120.1°
H9	C5'	H10	109.4°	109.5°
H12	N72	H13	120.1°	120.0°
P	OP3	H16	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N2	C2	N1	N3	179.9°	179.9°
N2	C2	N1	C6	179.9°	179.9°
N2	C2	N3	C4	179.5°	180.0°
C2	N2	H1	H2	180.0°	179.9°
N2	C2	N1	H4	0.1°	0.1°
C2	N1	C6	H4	180.0°	180.0°
N1	C2	N3	C4	0.4°	0.1°
C2	N1	C6	O6	179.1°	179.9°
C2	N1	C6	C5	0.4°	0.1°
N1	C2	N2	H1	179.9°	0.1°
N1	C2	N2	H2	0.1°	180.0°
N3	C2	N1	C6	0.2°	0.0°
C2	N3	C4	C5	1.0°	0.1°
C2	N3	C4	N9	179.9°	180.0°
N3	C2	N2	H1	0.0°	180.0°
N3	C2	N2	H2	180.0°	0.1°
N3	C2	N1	H4	179.8°	180.0°
N1	C6	O6	C5	179.3°	179.8°
N1	C6	C5	C4	0.2°	0.0°
N1	C6	C5	C7	179.8°	179.9°
N3	C4	C5	C6	0.9°	0.1°
N3	C4	C5	N9	179.0°	179.9°
N3	C4	C5	C7	179.4°	180.0°
N3	C4	N9	C1'	0.9°	0.1°
N3	C4	N9	C8	179.4°	179.9°
O6	C6	C5	C4	179.5°	179.9°
O6	C6	C5	C7	0.8°	0.1°
O6	C6	N1	H4	0.9°	0.1°
C6	C5	C4	C7	179.7°	180.0°
C6	C5	C4	N9	179.9°	180.0°
C6	C5	C7	C8	179.9°	180.0°
C6	C5	C7	CA7	0.9°	0.0°
C5	C6	N1	H4	179.6°	179.9°
C5	C4	N9	C1'	180.0°	180.0°
C5	C4	N9	C8	0.3°	0.0°
C4	C5	C7	C8	0.2°	0.1°
C4	C5	C7	CA7	178.8°	179.9°
N9	C4	C5	C7	0.3°	0.1°
C4	N9	C1'	C8	179.6°	180.0°
C4	N9	C1'	O4'	155.0°	156.4°
C4	N9	C1'	C2'	85.1°	88.2°
C4	N9	C8	C7	0.2°	0.0°
C4	N9	C8	H3	179.8°	180.0°
C4	N9	C1'	H5	35.2°	34.3°
C5	C7	C8	N9	0.1°	0.0°
C5	C7	C8	CA7	179.0°	180.0°
C5	C7	CA7	N71	5.6°	0.0°
C5	C7	CA7	N72	173.2°	179.9°
C5	C7	C8	H3	180.0°	180.0°
N9	C1'	O4'	C2'	122.8°	118.9°
N9	C1'	O4'	H5	119.2°	122.2°
N9	C1'	C2'	H5	120.6°	122.3°
N9	C1'	O4'	C4'	123.6°	159.4°
C1'	N9	C8	C7	179.9°	180.0°
N9	C1'	C2'	O2'	141.6°	98.5°
N9	C1'	C2'	C3'	101.5°	142.8°
C1'	N9	C8	H3	0.1°	0.0°
N9	C1'	C2'	H6	17.1°	24.2°
O4'	C1'	C2'	H5	119.0°	118.9°
O4'	C1'	N9	C8	24.7°	23.6°
O4'	C1'	C2'	O2'	98.0°	142.6°
O4'	C1'	C2'	C3'	18.8°	24.0°
C1'	O4'	C4'	C5'	145.0°	159.4°
C1'	O4'	C4'	C3'	20.3°	40.5°
O4'	C1'	C2'	H6	137.5°	94.6°
C1'	O4'	C4'	H8	95.7°	78.4°
C2'	C1'	N9	C8	95.3°	91.8°
C2'	C1'	O4'	C4'	0.7°	40.5°
C1'	C2'	O2'	C3'	111.8°	114.6°
C1'	C2'	O2'	H6	123.5°	122.7°
C1'	C2'	C3'	H6	118.6°	118.7°
C1'	C2'	C3'	C4'	30.1°	0.0°
C1'	C2'	C3'	O3'	149.1°	118.6°
C1'	C2'	C3'	H7	86.8°	118.8°
C1'	C2'	O2'	H14	180.0°	180.0°
N9	C8	C7	H3	180.0°	180.0°
N9	C8	C7	CA7	179.1°	179.9°
C8	N9	C1'	H5	144.5°	145.7°
O4'	C4'	C3'	C2'	31.3°	24.0°
O4'	C4'	C5'	C3'	118.5°	115.4°
O4'	C4'	C5'	H8	119.8°	122.4°
O4'	C4'	C3'	H8	116.8°	118.9°
O4'	C4'	C5'	O5'	65.5°	69.6°
O4'	C4'	C3'	O3'	151.7°	142.6°
C4'	O4'	C1'	H5	117.2°	78.5°
O4'	C4'	C3'	H7	85.5°	94.8°
O4'	C4'	C5'	H9	54.7°	170.4°
O4'	C4'	C5'	H10	174.3°	50.4°
C8	C7	CA7	N71	175.6°	180.0°
C8	C7	CA7	N72	5.6°	0.1°
C7	CA7	N71	N72	178.8°	179.9°
CA7	C7	C8	H3	0.9°	0.1°
C7	CA7	N71	H11	178.8°	180.0°
C7	CA7	N72	H12	178.8°	0.1°
C7	CA7	N72	H13	1.2°	180.0°
O2'	C2'	C3'	H6	125.8°	122.7°
O2'	C2'	C3'	C4'	85.6°	118.7°
O2'	C2'	C3'	O3'	33.4°	0.0°
O2'	C2'	C1'	H5	20.9°	23.8°
O2'	C2'	C3'	H7	157.5°	122.5°
N71	CA7	N72	H12	0.0°	180.0°
N71	CA7	N72	H13	180.0°	0.1°
N72	CA7	N71	H11	0.0°	0.1°
CA7	N72	H12	H13	180.0°	179.8°
C2'	C3'	C4'	C5'	152.8°	142.8°
C2'	C3'	C4'	O3'	120.4°	118.6°
C2'	C3'	C4'	H7	116.9°	118.7°
C2'	C3'	O3'	H7	123.2°	122.6°
C3'	C2'	C1'	H5	137.8°	94.9°
C2'	C3'	C4'	H8	85.5°	95.0°
C3'	C2'	O2'	H14	68.2°	65.4°
C2'	C3'	O3'	H15	180.0°	61.4°
C5'	C4'	C3'	H8	121.8°	122.2°
C4'	C5'	O5'	H9	120.2°	120.0°
C4'	C5'	O5'	H10	120.2°	120.0°
C5'	C4'	C3'	O3'	86.8°	98.5°
C4'	C5'	O5'	P	156.4°	180.0°
C5'	C4'	C3'	H7	35.9°	24.1°
C4'	C5'	H9	H10	119.4°	120.0°
C3'	C4'	C5'	O5'	53.0°	175.0°
C4'	C3'	O3'	H7	121.9°	122.8°
C4'	C3'	C2'	H6	148.7°	118.7°
C3'	C4'	C5'	H9	173.2°	55.0°
C3'	C4'	C5'	H10	67.2°	65.0°
C4'	C3'	O3'	H15	65.1°	176.1°
C5'	O5'	P	OP2	161.4°	65.0°
C5'	O5'	P	OP1	69.8°	55.0°
O5'	C5'	C4'	H8	174.7°	52.8°
O5'	C5'	H9	H10	119.4°	120.0°
C5'	O5'	P	OP3	45.4°	175.0°
O3'	C3'	C2'	H6	92.3°	122.7°
O3'	C3'	C4'	H8	34.9°	23.7°
O5'	P	OP2	OP1	122.7°	120.0°
O5'	P	OP2	OP3	112.5°	119.9°
O5'	P	OP1	OP3	113.3°	120.0°
P	O5'	C5'	H9	36.2°	60.0°
P	O5'	C5'	H10	83.4°	60.0°
O5'	P	OP2	H17	122.7°	60.0°
O5'	P	OP3	H16	116.1°	180.0°
OP2	P	OP1	OP3	125.8°	120.0°
OP2	P	OP3	H16	131.0°	60.1°
OP1	P	OP2	H17	0.0°	180.0°
OP1	P	OP3	H16	0.0°	60.0°
H5	C1'	C2'	H6	103.6°	146.5°
H6	C2'	C3'	H7	31.7°	0.2°
H6	C2'	O2'	H14	56.6°	57.3°
H7	C3'	C4'	H8	157.7°	146.3°
H7	C3'	O3'	H15	56.8°	61.2°
H8	C4'	C5'	H9	65.1°	67.3°
H8	C4'	C5'	H10	54.5°	172.8°
H17	OP2	P	OP3	124.8°	60.0°

Release date:	2022-05-04
Definition date:	2021-10-20
Last modified:	2022-04-29
Release status:	REL
Processing site:	PDBJ
Derived from:	7VNV