7QT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O6	C6	doub	1.22Å	1.24Å
O2B	PB	doub	1.48Å	1.57Å
C6	N1	sing	1.35Å	1.40Å
C6	C5	sing	1.42Å	1.42Å
C3	C2'	sing	1.53Å	1.54Å
N1	C2	sing	1.36Å	1.37Å
N7	C5	sing	1.36Å	1.39Å	Aromatic
N7	C8	doub	1.30Å	1.32Å	Aromatic
C5	C4	doub	1.40Å	1.38Å	Aromatic
O2A	PA	doub	1.48Å	1.49Å
C2	N2	sing	1.37Å	1.34Å
C2	N3	doub	1.31Å	1.33Å
C8	N9	sing	1.36Å	1.37Å	Aromatic
C4	N9	sing	1.37Å	1.37Å	Aromatic
C4	N3	sing	1.34Å	1.35Å
PB	O3B	sing	1.61Å	1.51Å
PB	O1B	sing	1.61Å	1.49Å
PB	O3A	sing	1.61Å	1.65Å
N9	C1'	sing	1.46Å	1.47Å
C2'	C3'	sing	1.54Å	1.52Å
C2'	C1'	sing	1.55Å	1.55Å
C2'	F4	sing	1.40Å	1.44Å
C3'	O3'	sing	1.43Å	1.40Å
C3'	C4'	sing	1.55Å	1.53Å
O3A	PA	sing	1.61Å	1.62Å
PA	O5'	sing	1.61Å	1.59Å
PA	O1A	sing	1.61Å	1.49Å
O5'	C5'	sing	1.43Å	1.44Å
C1'	O4'	sing	1.44Å	1.42Å
C4'	O4'	sing	1.44Å	1.43Å
C4'	C5'	sing	1.53Å	1.50Å
C1'	H1	sing	1.09Å	1.10Å
C3	H4	sing	1.09Å	1.10Å
C3	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C3'	H5	sing	1.09Å	1.10Å
C4'	H6	sing	1.09Å	1.10Å
C5'	H8	sing	1.09Å	1.10Å
C5'	H7	sing	1.09Å	1.10Å
C8	H9	sing	1.08Å	1.08Å
N1	H10	sing	0.97Å	1.00Å
N2	H12	sing	0.97Å	1.00Å
N2	H11	sing	0.97Å	1.00Å
O1A	H13	sing	0.97Å	0.95Å
O1B	H14	sing	0.97Å	0.95Å
O3'	H16	sing	0.97Å	0.95Å
O3B	H15	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O6	C6	N1	121.3°	120.8°
O6	C6	C5	127.0°	120.8°
O2B	PB	O3B	119.0°	109.4°
O2B	PB	O1B	121.1°	109.5°
O2B	PB	O3A	99.7°	109.5°
N1	C6	C5	111.7°	118.3°
C6	N1	C2	123.8°	120.3°
C6	N1	H10	118.1°	119.8°
C6	C5	N7	129.9°	134.1°
C6	C5	C4	119.6°	118.6°
C3	C2'	C3'	119.8°	110.5°
C3	C2'	C1'	109.8°	110.5°
C3	C2'	F4	111.4°	110.6°
C2'	C3	H4	109.5°	109.5°
C2'	C3	H2	109.5°	109.5°
C2'	C3	H3	109.5°	109.5°
N1	C2	N2	117.5°	119.0°
N1	C2	N3	124.9°	121.9°
C2	N1	H10	118.1°	119.9°
C5	N7	C8	103.9°	109.3°
N7	C5	C4	110.5°	107.3°
N7	C8	N9	113.3°	109.8°
N7	C8	H9	123.4°	125.1°
C5	C4	N9	106.1°	106.1°
C5	C4	N3	128.2°	119.7°
O2A	PA	O3A	105.3°	109.5°
O2A	PA	O5'	109.9°	109.5°
O2A	PA	O1A	123.4°	109.4°
N2	C2	N3	117.6°	119.1°
C2	N2	H12	120.0°	120.0°
C2	N2	H11	120.0°	120.0°
C2	N3	C4	111.6°	121.1°
C8	N9	C4	106.0°	107.5°
C8	N9	C1'	129.7°	126.3°
N9	C8	H9	123.3°	125.1°
N9	C4	N3	125.7°	134.2°
C4	N9	C1'	123.7°	126.3°
O3B	PB	O1B	97.9°	109.5°
O3B	PB	O3A	104.2°	109.4°
PB	O3B	H15	109.5°	113.9°
O1B	PB	O3A	114.5°	109.5°
PB	O1B	H14	109.5°	114.0°
PB	O3A	PA	138.8°	134.0°
N9	C1'	C2'	120.1°	110.4°
N9	C1'	O4'	106.1°	110.4°
N9	C1'	H1	107.9°	110.3°
C3'	C2'	C1'	100.4°	104.1°
C3'	C2'	F4	108.7°	110.5°
C2'	C3'	O3'	113.6°	110.5°
C2'	C3'	C4'	102.7°	104.1°
C2'	C3'	H5	110.2°	110.5°
C1'	C2'	F4	105.3°	110.5°
C2'	C1'	O4'	106.9°	104.8°
C2'	C1'	H1	106.9°	110.4°
O3'	C3'	C4'	107.8°	110.5°
O3'	C3'	H5	112.0°	110.5°
C3'	O3'	H16	109.5°	114.0°
C3'	C4'	O4'	103.6°	104.8°
C3'	C4'	C5'	116.8°	110.4°
C4'	C3'	H5	110.1°	110.6°
C3'	C4'	H6	109.5°	110.3°
O3A	PA	O5'	106.1°	109.5°
O3A	PA	O1A	111.5°	109.5°
O5'	PA	O1A	99.5°	109.5°
PA	O5'	C5'	116.0°	123.0°
PA	O1A	H13	109.5°	114.0°
O5'	C5'	C4'	107.4°	109.5°
O5'	C5'	H8	110.0°	109.4°
O5'	C5'	H7	110.0°	109.5°
C1'	O4'	C4'	110.4°	105.3°
O4'	C1'	H1	108.5°	110.4°
O4'	C4'	C5'	105.9°	110.4°
O4'	C4'	H6	110.9°	110.4°
C5'	C4'	H6	109.9°	110.4°
C4'	C5'	H8	110.0°	109.5°
C4'	C5'	H7	110.0°	109.5°
H4	C3	H2	109.4°	109.5°
H4	C3	H3	109.5°	109.5°
H2	C3	H3	109.5°	109.4°
H8	C5'	H7	109.4°	109.5°
H12	N2	H11	120.0°	120.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O6	C6	N1	C5	178.3°	180.0°
O6	C6	N1	C2	177.4°	180.0°
O6	C6	C5	N7	0.6°	0.1°
O6	C6	C5	C4	179.3°	179.8°
O6	C6	N1	H10	2.6°	0.1°
O2B	PB	O3B	O1B	132.3°	120.0°
O2B	PB	O3B	O3A	109.8°	120.0°
O2B	PB	O1B	O3A	119.4°	120.1°
O2B	PB	O3A	PA	57.5°	45.0°
O2B	PB	O1B	H14	0.0°	179.9°
O2B	PB	O3B	H15	0.0°	60.0°
C6	N1	C2	H10	180.0°	179.9°
N1	C6	C5	N7	178.8°	179.9°
N1	C6	C5	C4	2.5°	0.3°
C6	N1	C2	N2	178.5°	180.0°
C6	N1	C2	N3	2.3°	0.3°
C5	C6	N1	C2	4.4°	0.0°
C6	C5	N7	C4	178.8°	179.7°
C6	C5	N7	C8	178.0°	179.7°
C6	C5	C4	N9	179.3°	179.7°
C6	C5	C4	N3	1.6°	0.2°
C5	C6	N1	H10	175.6°	180.0°
C3	C2'	C1'	N9	31.5°	24.2°
C3	C2'	C3'	C1'	120.2°	118.7°
C3	C2'	C3'	F4	129.6°	122.7°
C3	C2'	C1'	F4	120.0°	122.7°
C3	C2'	C3'	O3'	86.1°	122.7°
C3	C2'	C3'	C4'	157.7°	118.6°
C3	C2'	C1'	O4'	152.2°	94.7°
C3	C2'	C1'	H1	91.8°	146.5°
C2'	C3	H4	H2	120.0°	120.0°
C2'	C3	H4	H3	120.0°	120.0°
C2'	C3	H2	H3	120.0°	120.0°
C3	C2'	C3'	H5	40.5°	0.1°
N1	C2	N2	N3	179.3°	179.7°
N1	C2	N3	C4	1.9°	0.3°
N1	C2	N2	H12	179.3°	179.7°
N1	C2	N2	H11	0.7°	0.3°
C5	N7	C8	N9	3.3°	0.0°
N7	C5	C4	N9	1.8°	0.0°
N7	C5	C4	N3	177.3°	180.0°
C5	N7	C8	H9	176.7°	180.0°
C8	N7	C5	C4	0.8°	0.0°
N7	C8	N9	H9	180.0°	180.0°
N7	C8	N9	C4	4.5°	0.0°
N7	C8	N9	C1'	175.4°	180.0°
C5	C4	N3	C2	3.9°	0.1°
C5	C4	N9	C8	3.6°	0.0°
C5	C4	N9	N3	179.1°	180.0°
C5	C4	N9	C1'	175.2°	180.0°
O2A	PA	O3A	PB	65.1°	45.0°
O2A	PA	O3A	O5'	116.5°	120.0°
O2A	PA	O3A	O1A	136.1°	120.0°
O2A	PA	O5'	O1A	130.9°	120.0°
O2A	PA	O5'	C5'	163.5°	55.0°
O2A	PA	O1A	H13	0.0°	180.0°
N2	C2	N3	C4	177.4°	180.0°
N2	C2	N1	H10	1.5°	0.0°
C2	N2	H12	H11	180.0°	179.9°
C2	N3	C4	N9	177.2°	180.0°
N3	C2	N1	H10	177.7°	179.6°
N3	C2	N2	H12	0.0°	0.1°
N3	C2	N2	H11	180.0°	180.0°
C8	N9	C4	C1'	171.6°	180.0°
C8	N9	C4	N3	175.5°	179.9°
C8	N9	C1'	C2'	89.6°	91.9°
C8	N9	C1'	O4'	31.5°	23.5°
C8	N9	C1'	H1	147.6°	145.8°
C4	N9	C1'	C2'	100.9°	88.1°
C4	N9	C1'	O4'	138.1°	156.5°
C4	N9	C1'	H1	21.9°	34.2°
C4	N9	C8	H9	175.5°	180.0°
N3	C4	N9	C1'	3.9°	0.0°
O3B	PB	O1B	O3A	109.6°	120.0°
O3B	PB	O3A	PA	66.0°	165.0°
O3B	PB	O1B	H14	130.9°	60.0°
O1B	PB	O3A	PA	171.7°	75.0°
O1B	PB	O3B	H15	132.3°	60.0°
PB	O3A	PA	O5'	51.4°	165.0°
PB	O3A	PA	O1A	158.8°	75.0°
O3A	PB	O1B	H14	119.4°	60.0°
O3A	PB	O3B	H15	109.8°	180.0°
N9	C1'	C2'	C3'	95.7°	142.9°
N9	C1'	C2'	O4'	120.7°	118.9°
N9	C1'	C2'	H1	123.3°	122.3°
N9	C1'	C2'	F4	151.5°	98.5°
N9	C1'	O4'	H1	115.8°	122.3°
N9	C1'	O4'	C4'	127.6°	159.4°
C1'	N9	C8	H9	4.6°	0.0°
C3'	C2'	C1'	F4	112.8°	118.6°
C2'	C3'	O3'	C4'	113.1°	114.6°
C2'	C3'	O3'	H5	125.7°	122.6°
C2'	C3'	C4'	H5	117.4°	118.7°
C3'	C2'	C1'	O4'	25.0°	24.0°
C2'	C3'	C4'	O4'	38.0°	24.0°
C2'	C3'	C4'	C5'	154.0°	142.8°
C3'	C2'	C1'	H1	141.1°	94.8°
C3'	C2'	C3	H4	180.0°	61.4°
C3'	C2'	C3	H2	60.0°	178.5°
C3'	C2'	C3	H3	60.0°	58.6°
C2'	C3'	C4'	H6	80.3°	94.8°
C2'	C3'	O3'	H16	180.0°	180.0°
C1'	C2'	C3'	O3'	153.7°	118.6°
C1'	C2'	C3'	C4'	37.5°	0.0°
C2'	C1'	O4'	H1	115.0°	118.8°
C2'	C1'	O4'	C4'	1.6°	40.5°
C1'	C2'	C3	H4	64.6°	176.1°
C1'	C2'	C3	H2	55.4°	63.9°
C1'	C2'	C3	H3	175.4°	56.1°
C1'	C2'	C3'	H5	79.7°	118.8°
F4	C2'	C3'	O3'	43.5°	0.0°
F4	C2'	C3'	C4'	72.7°	118.7°
F4	C2'	C1'	O4'	87.8°	142.6°
F4	C2'	C1'	H1	28.2°	23.8°
F4	C2'	C3	H4	51.6°	61.2°
F4	C2'	C3	H2	171.6°	58.8°
F4	C2'	C3	H3	68.4°	178.7°
F4	C2'	C3'	H5	170.1°	122.6°
O3'	C3'	C4'	H5	122.4°	122.7°
O3'	C3'	C4'	O4'	158.2°	142.6°
O3'	C3'	C4'	C5'	85.8°	98.5°
O3'	C3'	C4'	H6	39.9°	23.8°
C3'	C4'	C5'	O5'	51.9°	175.0°
C3'	C4'	O4'	C1'	22.6°	40.5°
C3'	C4'	O4'	C5'	123.5°	118.8°
C3'	C4'	O4'	H6	117.4°	118.8°
C3'	C4'	C5'	H6	125.5°	122.3°
C3'	C4'	C5'	H8	67.8°	55.0°
C3'	C4'	C5'	H7	171.6°	65.0°
C4'	C3'	O3'	H16	67.0°	65.4°
O3A	PA	O5'	O1A	115.7°	120.0°
O3A	PA	O5'	C5'	50.2°	175.0°
O3A	PA	O1A	H13	126.8°	60.0°
PA	O5'	C5'	C4'	165.4°	180.0°
PA	O5'	C5'	H8	45.7°	60.0°
PA	O5'	C5'	H7	74.9°	60.0°
O5'	PA	O1A	H13	121.6°	59.9°
O1A	PA	O5'	C5'	65.6°	65.0°
O5'	C5'	C4'	O4'	62.8°	69.6°
O5'	C5'	C4'	H8	119.7°	120.0°
O5'	C5'	C4'	H7	119.7°	120.1°
O5'	C5'	C4'	H6	177.4°	52.7°
O5'	C5'	H8	H7	120.9°	120.0°
C1'	O4'	C4'	C5'	146.0°	159.4°
C1'	O4'	C4'	H6	94.8°	78.3°
O4'	C4'	C5'	H6	119.8°	122.3°
C4'	O4'	C1'	H1	116.6°	78.3°
O4'	C4'	C3'	H5	79.4°	94.7°
O4'	C4'	C5'	H8	177.5°	170.4°
O4'	C4'	C5'	H7	56.9°	50.4°
C5'	C4'	C3'	H5	36.6°	24.1°
C4'	C5'	H8	H7	120.9°	120.0°
H4	C3	H2	H3	120.0°	120.0°
H5	C3'	C4'	H6	162.3°	146.5°
H5	C3'	O3'	H16	54.3°	57.3°
H6	C4'	C5'	H8	57.7°	67.3°
H6	C4'	C5'	H7	62.9°	172.7°

Release date:	2024-07-31
Definition date:	2023-07-12
Last modified:	2024-07-26
Release status:	REL
Processing site:	PDBE
Derived from:	8PIE