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Summary Geometry Related PDB entries

7QS

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C6	doub	1.38Å	1.35Å	Aromatic
C1	C2	sing	1.38Å	1.37Å	Aromatic
C6	C5	sing	1.38Å	1.37Å	Aromatic
C2	C3	doub	1.38Å	1.38Å	Aromatic
O9	C8	doub	1.21Å	1.23Å
C5	C4	doub	1.38Å	1.38Å	Aromatic
C3	C4	sing	1.38Å	1.37Å	Aromatic
C4	C7	sing	1.51Å	1.54Å
C8	N10	sing	1.32Å	1.29Å
C8	C7	sing	1.51Å	1.52Å
N10	C11	sing	1.33Å	1.32Å
C7	S13	sing	1.82Å	1.86Å
C11	O12	doub	1.22Å	1.23Å
C11	S13	sing	1.77Å	1.73Å
C1	H1	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
C6	H3	sing	1.08Å	1.08Å
C3	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C7	H6	sing	1.09Å	1.10Å
N10	H7	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C1	C2	117.5°	120.0°
C1	C6	C5	123.7°	120.0°
C6	C1	H1	121.2°	120.0°
C1	C6	H3	118.1°	120.0°
C1	C2	C3	120.3°	120.0°
C2	C1	H1	121.3°	120.0°
C1	C2	H2	119.9°	120.0°
C6	C5	C4	118.8°	120.0°
C5	C6	H3	118.1°	120.0°
C6	C5	H5	120.6°	120.0°
C2	C3	C4	121.3°	120.0°
C3	C2	H2	119.8°	120.0°
C2	C3	H4	119.4°	120.0°
O9	C8	N10	126.5°	123.1°
O9	C8	C7	121.0°	123.1°
C5	C4	C3	118.4°	120.0°
C5	C4	C7	121.3°	120.0°
C4	C5	H5	120.6°	120.0°
C3	C4	C7	120.4°	120.0°
C4	C3	H4	119.3°	120.0°
C4	C7	C8	110.4°	110.7°
C4	C7	S13	109.1°	110.7°
C4	C7	H6	111.6°	110.6°
N10	C8	C7	112.4°	113.8°
C8	N10	C11	117.0°	121.3°
C8	N10	H7	121.5°	119.4°
C8	C7	S13	105.8°	103.0°
C8	C7	H6	111.9°	110.7°
N10	C11	O12	129.1°	126.2°
N10	C11	S13	115.4°	107.7°
C11	N10	H7	121.5°	119.3°
C7	S13	C11	87.9°	94.2°
S13	C7	H6	107.8°	110.9°
O12	C11	S13	115.2°	126.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C1	C2	H1	180.0°	179.8°
C1	C6	C5	H3	180.0°	179.9°
C6	C1	C2	C3	0.2°	0.0°
C1	C6	C5	C4	0.3°	0.0°
C6	C1	C2	H2	179.8°	179.9°
C1	C6	C5	H5	179.7°	179.9°
C2	C1	C6	C5	0.5°	0.0°
C1	C2	C3	H2	180.0°	180.0°
C1	C2	C3	C4	1.0°	0.0°
C2	C1	C6	H3	179.5°	180.0°
C1	C2	C3	H4	179.0°	180.0°
C6	C5	C4	H5	180.0°	180.0°
C6	C5	C4	C3	1.4°	0.0°
C6	C5	C4	C7	178.4°	180.0°
C5	C6	C1	H1	179.5°	179.7°
C2	C3	C4	C5	1.7°	0.0°
C2	C3	C4	H4	180.0°	179.9°
C2	C3	C4	C7	178.1°	180.0°
C3	C2	C1	H1	179.8°	179.7°
O9	C8	C7	C4	60.3°	61.3°
O9	C8	N10	C7	176.7°	179.7°
O9	C8	N10	C11	171.1°	179.8°
O9	C8	C7	S13	178.2°	179.7°
O9	C8	C7	H6	64.7°	61.7°
O9	C8	N10	H7	8.9°	0.3°
C5	C4	C3	C7	179.8°	180.0°
C5	C4	C7	C8	69.0°	60.0°
C5	C4	C7	S13	46.9°	53.6°
C4	C5	C6	H3	179.7°	180.0°
C5	C4	C3	H4	178.3°	180.0°
C5	C4	C7	H6	165.9°	176.9°
C3	C4	C7	C8	111.3°	120.0°
C3	C4	C7	S13	132.9°	126.4°
C4	C3	C2	H2	179.0°	179.9°
C3	C4	C5	H5	178.6°	179.9°
C3	C4	C7	H6	13.9°	3.1°
C4	C7	C8	N10	122.8°	118.3°
C4	C7	C8	S13	117.9°	118.4°
C4	C7	C8	H6	125.0°	123.0°
C4	C7	S13	H6	121.3°	123.1°
C4	C7	S13	C11	116.8°	118.4°
C7	C4	C3	H4	1.9°	0.0°
C7	C4	C5	H5	1.6°	0.0°
C8	N10	C11	H7	180.0°	179.9°
N10	C8	C7	S13	4.9°	0.0°
C8	N10	C11	O12	159.2°	180.0°
C8	N10	C11	S13	14.5°	0.1°
N10	C8	C7	H6	112.2°	118.6°
C7	C8	N10	C11	12.2°	0.1°
C8	C7	S13	H6	119.9°	118.5°
C8	C7	S13	C11	2.0°	0.0°
C7	C8	N10	H7	167.8°	180.0°
N10	C11	S13	C7	8.8°	0.1°
N10	C11	O12	S13	173.7°	179.9°
C7	S13	C11	O12	165.8°	180.0°
O12	C11	N10	H7	20.8°	0.1°
C11	S13	C7	H6	121.9°	118.5°
S13	C11	N10	H7	165.6°	180.0°
H1	C1	C2	H2	0.2°	0.3°
H1	C1	C6	H3	0.5°	0.2°
H2	C2	C3	H4	1.0°	0.0°
H3	C6	C5	H5	0.3°	0.0°

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PDB entries from 2026-02-04

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