7Q6
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| O1B | PB | doub | 1.48Å | 1.51Å | |
| O3B | PB | sing | 1.61Å | 1.60Å | |
| O3B | PG | sing | 1.61Å | 1.61Å | |
| O2G | PG | doub | 1.48Å | 1.52Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| PB | O2B | sing | 1.61Å | 1.51Å | |
| PB | O3A | sing | 1.61Å | 1.63Å | |
| PG | O3G | sing | 1.61Å | 1.51Å | |
| PG | O1G | sing | 1.61Å | 1.50Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| O3A | PA | sing | 1.61Å | 1.62Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | N9 | sing | 1.47Å | 1.47Å | |
| N2 | C2 | sing | 1.37Å | 1.35Å | |
| N3 | C2 | doub | 1.31Å | 1.35Å | |
| N3 | C4 | sing | 1.34Å | 1.35Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C2 | N1 | sing | 1.36Å | 1.36Å | |
| N9 | C4 | sing | 1.37Å | 1.32Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.34Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.47Å | Aromatic |
| O5' | PA | sing | 1.61Å | 1.59Å | |
| N1 | C6 | sing | 1.35Å | 1.35Å | |
| PA | SEA | sing | 2.27Å | 1.88Å | |
| PA | O1A | doub | 1.48Å | 1.61Å | |
| C8 | N7 | doub | 1.30Å | 1.34Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.36Å | |
| C5 | N7 | sing | 1.36Å | 1.33Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| O3G | H1 | sing | 0.97Å | 0.95Å | |
| O1G | H2 | sing | 0.97Å | 0.95Å | |
| O2B | H3 | sing | 0.97Å | 0.95Å | |
| SEA | H4 | sing | 1.56Å | 1.46Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C2' | H10 | sing | 1.09Å | 1.10Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| C1' | H12 | sing | 1.09Å | 1.10Å | |
| N2 | H13 | sing | 0.97Å | 1.00Å | |
| N2 | H14 | sing | 0.97Å | 1.00Å | |
| N1 | H15 | sing | 0.97Å | 1.00Å | |
| C8 | H16 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 112.2° | 110.9° |
| O3' | C3' | C4' | 111.5° | 110.9° |
| O3' | C3' | H8 | 110.6° | 110.9° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| O1B | PB | O3B | 104.8° | 109.5° |
| O1B | PB | O2B | 110.1° | 109.5° |
| O1B | PB | O3A | 108.4° | 109.5° |
| PB | O3B | PG | 122.9° | 134.0° |
| O3B | PB | O2B | 105.5° | 109.5° |
| O3B | PB | O3A | 111.1° | 109.5° |
| O3B | PG | O2G | 110.9° | 109.5° |
| O3B | PG | O3G | 104.9° | 109.5° |
| O3B | PG | O1G | 110.5° | 109.5° |
| O2G | PG | O3G | 112.5° | 109.5° |
| O2G | PG | O1G | 109.1° | 109.4° |
| C2' | C3' | C4' | 103.5° | 102.1° |
| C3' | C2' | C1' | 104.2° | 104.2° |
| C2' | C3' | H8 | 109.4° | 110.9° |
| C3' | C2' | H10 | 110.8° | 110.5° |
| C3' | C2' | H11 | 110.8° | 110.5° |
| C3' | C4' | C5' | 111.9° | 110.6° |
| C3' | C4' | O4' | 106.7° | 103.5° |
| C3' | C4' | H7 | 108.7° | 110.7° |
| C4' | C3' | H8 | 109.3° | 110.9° |
| C2' | C1' | O4' | 107.7° | 107.3° |
| C2' | C1' | N9 | 105.5° | 109.9° |
| C1' | C2' | H10 | 110.8° | 110.5° |
| C1' | C2' | H11 | 110.8° | 110.5° |
| C2' | C1' | H12 | 109.7° | 109.9° |
| O2B | PB | O3A | 116.3° | 109.5° |
| PB | O2B | H3 | 109.5° | 114.0° |
| PB | O3A | PA | 131.7° | 134.0° |
| O3G | PG | O1G | 108.9° | 109.5° |
| PG | O3G | H1 | 109.5° | 114.0° |
| PG | O1G | H2 | 109.5° | 114.0° |
| C5' | C4' | O4' | 110.8° | 110.7° |
| C4' | C5' | O5' | 106.1° | 109.5° |
| C4' | C5' | H5 | 110.3° | 109.4° |
| C4' | C5' | H6 | 110.3° | 109.5° |
| C5' | C4' | H7 | 108.8° | 110.5° |
| C4' | O4' | C1' | 109.9° | 107.0° |
| O4' | C4' | H7 | 109.9° | 110.6° |
| O3A | PA | O5' | 111.7° | 109.5° |
| O3A | PA | SEA | 110.4° | 109.5° |
| O3A | PA | O1A | 114.4° | 109.5° |
| O4' | C1' | N9 | 112.3° | 109.8° |
| O4' | C1' | H12 | 111.1° | 109.9° |
| C1' | N9 | C4 | 124.3° | 126.2° |
| C1' | N9 | C8 | 127.0° | 126.3° |
| N9 | C1' | H12 | 110.4° | 110.0° |
| N2 | C2 | N3 | 118.5° | 119.1° |
| N2 | C2 | N1 | 119.5° | 119.0° |
| C2 | N2 | H13 | 120.0° | 120.0° |
| C2 | N2 | H14 | 120.0° | 120.0° |
| C2 | N3 | C4 | 118.8° | 121.2° |
| N3 | C2 | N1 | 122.0° | 121.9° |
| N3 | C4 | N9 | 134.9° | 134.3° |
| N3 | C4 | C5 | 119.7° | 119.6° |
| C5' | O5' | PA | 124.6° | 123.0° |
| O5' | C5' | H5 | 110.3° | 109.5° |
| O5' | C5' | H6 | 110.3° | 109.5° |
| C2 | N1 | C6 | 121.8° | 120.3° |
| C2 | N1 | H15 | 119.1° | 119.8° |
| C4 | N9 | C8 | 108.7° | 107.5° |
| N9 | C4 | C5 | 105.4° | 106.1° |
| N9 | C8 | N7 | 111.7° | 109.8° |
| N9 | C8 | H16 | 124.1° | 125.1° |
| C4 | C5 | C6 | 118.8° | 118.7° |
| C4 | C5 | N7 | 107.7° | 107.2° |
| O5' | PA | SEA | 101.0° | 109.5° |
| O5' | PA | O1A | 111.2° | 109.5° |
| N1 | C6 | C5 | 118.9° | 118.3° |
| N1 | C6 | O6 | 123.5° | 120.8° |
| C6 | N1 | H15 | 119.1° | 119.8° |
| SEA | PA | O1A | 107.2° | 109.5° |
| PA | SEA | H4 | 109.5° | 101.0° |
| C8 | N7 | C5 | 106.6° | 109.3° |
| N7 | C8 | H16 | 124.2° | 125.1° |
| C6 | C5 | N7 | 133.6° | 134.1° |
| C5 | C6 | O6 | 117.6° | 120.9° |
| H5 | C5' | H6 | 109.5° | 109.4° |
| H10 | C2' | H11 | 109.5° | 110.5° |
| H13 | N2 | H14 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | C4' | 120.4° | 118.2° |
| O3' | C3' | C2' | H8 | 123.2° | 123.6° |
| O3' | C3' | C4' | H8 | 122.6° | 123.6° |
| O3' | C3' | C2' | C1' | 147.0° | 139.0° |
| O3' | C3' | C4' | C5' | 90.3° | 86.3° |
| O3' | C3' | C4' | O4' | 148.3° | 155.2° |
| O3' | C3' | C4' | H7 | 29.9° | 36.6° |
| O3' | C3' | C2' | H10 | 93.9° | 102.3° |
| O3' | C3' | C2' | H11 | 27.8° | 20.3° |
| O1B | PB | O3B | O2B | 116.2° | 120.0° |
| O1B | PB | O3B | O3A | 116.9° | 120.0° |
| O1B | PB | O3B | PG | 178.6° | 40.0° |
| O1B | PB | O2B | O3A | 123.8° | 120.0° |
| O1B | PB | O3A | PA | 120.8° | 45.0° |
| O1B | PB | O2B | H3 | 0.0° | 180.0° |
| PB | O3B | PG | O2G | 138.1° | 45.1° |
| O3B | PB | O2B | O3A | 123.7° | 120.0° |
| PB | O3B | PG | O3G | 100.1° | 74.9° |
| PB | O3B | PG | O1G | 17.1° | 165.0° |
| O3B | PB | O3A | PA | 124.6° | 165.0° |
| O3B | PB | O2B | H3 | 112.5° | 60.0° |
| O3B | PG | O2G | O3G | 117.2° | 120.0° |
| O3B | PG | O2G | O1G | 121.8° | 120.0° |
| PG | O3B | PB | O2B | 62.3° | 80.0° |
| PG | O3B | PB | O3A | 64.6° | 160.0° |
| O3B | PG | O3G | O1G | 118.3° | 120.0° |
| O3B | PG | O3G | H1 | 120.6° | 60.0° |
| O3B | PG | O1G | H2 | 122.1° | 180.0° |
| O2G | PG | O3G | O1G | 121.1° | 120.0° |
| O2G | PG | O3G | H1 | 0.0° | 180.0° |
| O2G | PG | O1G | H2 | 0.0° | 60.0° |
| C2' | C3' | C4' | H8 | 116.5° | 118.2° |
| C3' | C2' | C1' | H10 | 119.2° | 118.6° |
| C3' | C2' | C1' | H11 | 119.1° | 118.7° |
| C2' | C3' | C4' | C5' | 148.8° | 155.6° |
| C2' | C3' | C4' | O4' | 27.4° | 37.0° |
| C3' | C2' | C1' | O4' | 17.2° | 2.0° |
| C3' | C2' | C1' | N9 | 102.9° | 121.4° |
| C2' | C3' | C4' | H7 | 91.0° | 81.5° |
| C2' | C3' | O3' | H9 | 180.0° | 61.6° |
| C3' | C2' | H10 | H11 | 122.4° | 122.6° |
| C3' | C2' | C1' | H12 | 138.1° | 117.4° |
| C4' | C3' | C2' | C1' | 26.6° | 20.9° |
| C3' | C4' | C5' | O4' | 119.0° | 114.1° |
| C3' | C4' | C5' | H7 | 120.1° | 123.0° |
| C3' | C4' | O4' | H7 | 117.7° | 118.6° |
| C3' | C4' | O4' | C1' | 17.3° | 40.1° |
| C3' | C4' | C5' | O5' | 65.8° | 179.5° |
| C3' | C4' | C5' | H5 | 174.7° | 60.5° |
| C3' | C4' | C5' | H6 | 53.7° | 59.4° |
| C4' | C3' | O3' | H9 | 64.4° | 174.2° |
| C4' | C3' | C2' | H10 | 145.7° | 139.6° |
| C4' | C3' | C2' | H11 | 92.6° | 97.8° |
| C2' | C1' | O4' | C4' | 0.0° | 26.5° |
| C2' | C1' | O4' | N9 | 115.7° | 119.4° |
| C2' | C1' | O4' | H12 | 120.1° | 119.5° |
| C2' | C1' | N9 | H12 | 118.4° | 121.1° |
| C2' | C1' | N9 | C4 | 89.9° | 85.0° |
| C2' | C1' | N9 | C8 | 86.5° | 95.3° |
| C1' | C2' | C3' | H8 | 89.9° | 97.3° |
| C1' | C2' | H10 | H11 | 122.4° | 122.6° |
| O2B | PB | O3A | PA | 3.9° | 75.0° |
| PB | O3A | PA | O5' | 70.8° | 180.0° |
| PB | O3A | PA | SEA | 40.7° | 60.0° |
| PB | O3A | PA | O1A | 161.7° | 60.0° |
| O3A | PB | O2B | H3 | 123.8° | 60.0° |
| O3G | PG | O1G | H2 | 123.2° | 60.0° |
| O1G | PG | O3G | H1 | 121.1° | 60.0° |
| C5' | C4' | O4' | H7 | 120.3° | 122.9° |
| C5' | C4' | O4' | C1' | 139.4° | 158.6° |
| C4' | C5' | O5' | H5 | 119.5° | 120.0° |
| C4' | C5' | O5' | H6 | 119.5° | 120.0° |
| C4' | C5' | O5' | PA | 150.2° | 180.0° |
| C4' | C5' | H5 | H6 | 121.6° | 120.0° |
| C5' | C4' | C3' | H8 | 32.3° | 37.3° |
| C4' | O4' | C1' | N9 | 115.8° | 145.9° |
| O4' | C4' | C5' | O5' | 53.2° | 66.4° |
| O4' | C4' | C5' | H5 | 66.3° | 53.6° |
| O4' | C4' | C5' | H6 | 172.7° | 173.5° |
| O4' | C4' | C3' | H8 | 89.1° | 81.2° |
| C4' | O4' | C1' | H12 | 120.1° | 92.9° |
| O3A | PA | O5' | C5' | 73.0° | 165.0° |
| O3A | PA | O5' | SEA | 117.4° | 120.0° |
| O3A | PA | O5' | O1A | 129.1° | 120.0° |
| O3A | PA | SEA | O1A | 125.2° | 120.0° |
| O3A | PA | SEA | H4 | 180.0° | 60.0° |
| O4' | C1' | N9 | H12 | 124.5° | 121.1° |
| O4' | C1' | N9 | C4 | 153.1° | 157.2° |
| O4' | C1' | N9 | C8 | 30.5° | 22.5° |
| C1' | O4' | C4' | H7 | 100.3° | 78.5° |
| O4' | C1' | C2' | H10 | 136.4° | 116.6° |
| O4' | C1' | C2' | H11 | 101.9° | 120.7° |
| C1' | N9 | C4 | N3 | 2.9° | 0.1° |
| C1' | N9 | C4 | C8 | 177.0° | 179.7° |
| C1' | N9 | C4 | C5 | 178.2° | 180.0° |
| C1' | N9 | C8 | N7 | 178.3° | 180.0° |
| N9 | C1' | C2' | H10 | 16.2° | 2.7° |
| N9 | C1' | C2' | H11 | 137.9° | 119.9° |
| C1' | N9 | C8 | H16 | 1.8° | 0.0° |
| N2 | C2 | N3 | N1 | 180.0° | 180.0° |
| N2 | C2 | N3 | C4 | 179.6° | 180.0° |
| N2 | C2 | N1 | C6 | 179.7° | 179.9° |
| C2 | N2 | H13 | H14 | 180.0° | 179.9° |
| N2 | C2 | N1 | H15 | 0.3° | 0.0° |
| C2 | N3 | C4 | N9 | 179.2° | 180.0° |
| C2 | N3 | C4 | C5 | 0.5° | 0.0° |
| N3 | C2 | N1 | C6 | 0.3° | 0.0° |
| N3 | C2 | N2 | H13 | 0.0° | 0.0° |
| N3 | C2 | N2 | H14 | 180.0° | 179.9° |
| N3 | C2 | N1 | H15 | 179.8° | 180.0° |
| C4 | N3 | C2 | N1 | 0.4° | 0.0° |
| N3 | C4 | N9 | C5 | 178.9° | 180.0° |
| N3 | C4 | N9 | C8 | 179.9° | 179.8° |
| N3 | C4 | C5 | C6 | 0.5° | 0.0° |
| N3 | C4 | C5 | N7 | 179.8° | 179.8° |
| C5' | O5' | PA | SEA | 44.4° | 45.0° |
| C5' | O5' | PA | O1A | 157.9° | 75.0° |
| O5' | C5' | H5 | H6 | 121.6° | 120.0° |
| O5' | C5' | C4' | H7 | 174.1° | 56.5° |
| C2 | N1 | C6 | H15 | 180.0° | 180.0° |
| C2 | N1 | C6 | C5 | 0.3° | 0.0° |
| C2 | N1 | C6 | O6 | 179.6° | 180.0° |
| N1 | C2 | N2 | H13 | 180.0° | 180.0° |
| N1 | C2 | N2 | H14 | 0.1° | 0.1° |
| C4 | N9 | C8 | N7 | 1.4° | 0.3° |
| N9 | C4 | C5 | C6 | 179.6° | 180.0° |
| N9 | C4 | C5 | N7 | 0.8° | 0.2° |
| C4 | N9 | C1' | H12 | 28.5° | 36.1° |
| C4 | N9 | C8 | H16 | 178.6° | 179.7° |
| C8 | N9 | C4 | C5 | 1.3° | 0.3° |
| N9 | C8 | N7 | H16 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.9° | 0.1° |
| C8 | N9 | C1' | H12 | 155.1° | 143.6° |
| C4 | C5 | C6 | N1 | 0.4° | 0.0° |
| C4 | C5 | N7 | C8 | 0.0° | 0.0° |
| C4 | C5 | C6 | N7 | 179.5° | 179.8° |
| C4 | C5 | C6 | O6 | 179.5° | 180.0° |
| O5' | PA | SEA | O1A | 116.4° | 120.0° |
| O5' | PA | SEA | H4 | 61.7° | 60.0° |
| PA | O5' | C5' | H5 | 90.3° | 60.0° |
| PA | O5' | C5' | H6 | 30.8° | 60.0° |
| N1 | C6 | C5 | O6 | 180.0° | 180.0° |
| N1 | C6 | C5 | N7 | 179.9° | 179.8° |
| O1A | PA | SEA | H4 | 54.8° | 180.0° |
| C8 | N7 | C5 | C6 | 179.5° | 179.8° |
| C5 | C6 | N1 | H15 | 179.7° | 180.0° |
| N7 | C5 | C6 | O6 | 0.0° | 0.2° |
| C5 | N7 | C8 | H16 | 179.2° | 179.9° |
| O6 | C6 | N1 | H15 | 0.3° | 0.0° |
| H5 | C5' | C4' | H7 | 54.7° | 176.5° |
| H6 | C5' | C4' | H7 | 66.4° | 63.6° |
| H7 | C4' | C3' | H8 | 152.5° | 160.2° |
| H8 | C3' | O3' | H9 | 57.5° | 62.1° |
| H8 | C3' | C2' | H10 | 29.3° | 21.4° |
| H8 | C3' | C2' | H11 | 151.0° | 144.0° |
| H10 | C2' | C1' | H12 | 102.7° | 123.9° |
| H11 | C2' | C1' | H12 | 19.0° | 1.3° |
