7OK
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2' | C2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| C2' | C1' | sing | 1.55Å | 1.35Å | |
| O3' | C3' | sing | 1.43Å | 1.39Å | |
| O2 | C2 | doub | 1.22Å | 1.18Å | |
| C3' | C4' | sing | 1.54Å | 1.58Å | |
| C1' | N1 | sing | 1.47Å | 1.49Å | |
| C1' | O4' | sing | 1.44Å | 1.63Å | |
| C2 | N1 | sing | 1.34Å | 1.35Å | |
| C2 | N3 | sing | 1.35Å | 1.33Å | |
| C4' | O4' | sing | 1.44Å | 1.30Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| N1 | C6 | sing | 1.38Å | 1.33Å | |
| N3 | C4 | sing | 1.39Å | 1.33Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C6 | C5 | doub | 1.34Å | 1.38Å | |
| C4 | C5 | sing | 1.47Å | 1.39Å | |
| C4 | N4 | doub | 1.31Å | 1.44Å | |
| O5' | P | sing | 1.61Å | 1.68Å | |
| N4 | OAC | sing | 1.42Å | 1.40Å | |
| P | OP1 | doub | 1.48Å | 1.66Å | |
| P | OP3 | sing | 1.61Å | 1.66Å | |
| P | OP2 | sing | 1.61Å | 1.59Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| N3 | H2 | sing | 0.97Å | 1.00Å | |
| OAC | H1 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2' | C2' | C3' | 110.0° | 110.9° |
| O2' | C2' | C1' | 109.8° | 110.9° |
| O2' | C2' | H2' | 111.2° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C2' | C1' | 103.3° | 102.1° |
| C2' | C3' | O3' | 112.9° | 110.6° |
| C2' | C3' | C4' | 101.3° | 104.2° |
| C2' | C3' | H3' | 109.4° | 110.5° |
| C3' | C2' | H2' | 109.8° | 110.9° |
| C2' | C1' | N1 | 122.1° | 110.6° |
| C2' | C1' | O4' | 106.5° | 103.5° |
| C1' | C2' | H2' | 112.4° | 111.0° |
| C2' | C1' | H1' | 110.7° | 110.7° |
| O3' | C3' | C4' | 113.1° | 110.5° |
| O3' | C3' | H3' | 111.2° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.1° |
| O2 | C2 | N1 | 119.7° | 119.2° |
| O2 | C2 | N3 | 120.0° | 119.2° |
| C3' | C4' | O4' | 102.5° | 107.3° |
| C3' | C4' | C5' | 110.2° | 109.8° |
| C3' | C4' | H4' | 109.6° | 110.0° |
| C4' | C3' | H3' | 108.5° | 110.5° |
| N1 | C1' | O4' | 100.6° | 110.6° |
| C1' | N1 | C2 | 118.4° | 119.1° |
| C1' | N1 | C6 | 120.3° | 119.1° |
| N1 | C1' | H1' | 108.6° | 110.5° |
| C1' | O4' | C4' | 107.0° | 107.0° |
| O4' | C1' | H1' | 107.0° | 110.8° |
| N1 | C2 | N3 | 120.3° | 121.6° |
| C2 | N1 | C6 | 121.3° | 121.8° |
| C2 | N3 | C4 | 120.9° | 119.6° |
| C2 | N3 | H2 | 119.5° | 120.2° |
| O4' | C4' | C5' | 109.9° | 109.9° |
| O4' | C4' | H4' | 114.1° | 109.9° |
| C4' | C5' | O5' | 106.5° | 109.4° |
| C4' | C5' | H5' | 110.2° | 109.5° |
| C4' | C5' | H5'' | 110.2° | 109.5° |
| C5' | C4' | H4' | 110.2° | 109.9° |
| N1 | C6 | C5 | 119.3° | 120.2° |
| N1 | C6 | H6 | 120.3° | 119.9° |
| N3 | C4 | C5 | 120.1° | 118.4° |
| N3 | C4 | N4 | 120.2° | 120.8° |
| C4 | N3 | H2 | 119.6° | 120.2° |
| C5' | O5' | P | 118.9° | 123.0° |
| O5' | C5' | H5' | 110.2° | 109.4° |
| O5' | C5' | H5'' | 110.2° | 109.5° |
| C6 | C5 | C4 | 118.1° | 118.4° |
| C6 | C5 | H5 | 121.0° | 120.7° |
| C5 | C6 | H6 | 120.3° | 120.0° |
| C5 | C4 | N4 | 119.8° | 120.8° |
| C4 | C5 | H5 | 121.0° | 120.8° |
| C4 | N4 | OAC | 119.9° | 120.0° |
| O5' | P | OP1 | 110.1° | 109.5° |
| O5' | P | OP3 | 109.6° | 109.4° |
| O5' | P | OP2 | 106.9° | 109.5° |
| N4 | OAC | H1 | 109.5° | 114.0° |
| OP1 | P | OP3 | 111.0° | 109.5° |
| OP1 | P | OP2 | 109.6° | 109.5° |
| OP3 | P | OP2 | 109.6° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2' | C2' | C3' | C1' | 117.2° | 118.1° |
| O2' | C2' | C3' | H2' | 122.7° | 123.6° |
| O2' | C2' | C1' | H2' | 124.4° | 123.6° |
| O2' | C2' | C3' | O3' | 44.6° | 20.3° |
| O2' | C2' | C3' | C4' | 76.6° | 139.0° |
| O2' | C2' | C1' | N1 | 153.0° | 86.3° |
| O2' | C2' | C1' | O4' | 92.7° | 155.2° |
| O2' | C2' | C3' | H3' | 169.0° | 102.3° |
| O2' | C2' | C1' | H1' | 23.2° | 36.5° |
| C3' | C2' | C1' | H2' | 118.3° | 118.3° |
| C2' | C3' | O3' | C4' | 114.2° | 114.8° |
| C2' | C3' | O3' | H3' | 123.4° | 122.6° |
| C2' | C3' | C4' | H3' | 115.1° | 118.7° |
| C3' | C2' | C1' | N1 | 89.6° | 155.5° |
| C3' | C2' | C1' | O4' | 24.6° | 37.1° |
| C2' | C3' | C4' | O4' | 42.9° | 2.0° |
| C2' | C3' | C4' | C5' | 159.8° | 121.4° |
| C2' | C3' | C4' | H4' | 78.7° | 117.5° |
| C2' | C3' | O3' | HO3' | 180.0° | 65.2° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.6° |
| C3' | C2' | C1' | H1' | 140.6° | 81.6° |
| C1' | C2' | C3' | O3' | 161.8° | 97.8° |
| C1' | C2' | C3' | C4' | 40.6° | 20.9° |
| C2' | C1' | N1 | O4' | 117.2° | 114.0° |
| C2' | C1' | N1 | H1' | 130.6° | 122.9° |
| C2' | C1' | O4' | H1' | 118.4° | 118.6° |
| C2' | C1' | N1 | C2 | 87.2° | 65.0° |
| C2' | C1' | O4' | C4' | 3.0° | 40.1° |
| C2' | C1' | N1 | C6 | 92.1° | 115.0° |
| C1' | C2' | C3' | H3' | 73.8° | 139.6° |
| C1' | C2' | O2' | HO2' | 66.9° | 174.2° |
| O3' | C3' | C4' | H3' | 123.8° | 122.5° |
| O3' | C3' | C4' | O4' | 164.0° | 120.8° |
| O3' | C3' | C4' | C5' | 79.1° | 119.8° |
| O3' | C3' | C4' | H4' | 42.4° | 1.3° |
| O3' | C3' | C2' | H2' | 78.1° | 143.9° |
| O2 | C2 | N1 | C1' | 0.6° | 0.0° |
| O2 | C2 | N1 | N3 | 179.7° | 179.6° |
| O2 | C2 | N1 | C6 | 179.9° | 180.0° |
| O2 | C2 | N3 | C4 | 180.0° | 180.0° |
| O2 | C2 | N3 | H2 | 0.0° | 0.1° |
| C3' | C4' | O4' | C1' | 27.7° | 26.6° |
| C3' | C4' | O4' | C5' | 117.2° | 119.3° |
| C3' | C4' | O4' | H4' | 118.4° | 119.6° |
| C3' | C4' | C5' | H4' | 121.1° | 121.2° |
| C3' | C4' | C5' | O5' | 90.1° | 175.7° |
| C3' | C4' | C5' | H5' | 150.4° | 64.3° |
| C3' | C4' | C5' | H5'' | 29.5° | 55.8° |
| C4' | C3' | O3' | HO3' | 65.8° | 180.0° |
| C4' | C3' | C2' | H2' | 160.7° | 97.4° |
| N1 | C1' | O4' | H1' | 113.4° | 122.9° |
| C1' | N1 | C2 | C6 | 179.3° | 180.0° |
| C1' | N1 | C2 | N3 | 179.6° | 179.7° |
| N1 | C1' | O4' | C4' | 131.2° | 158.6° |
| C1' | N1 | C6 | C5 | 179.5° | 180.0° |
| N1 | C1' | C2' | H2' | 28.7° | 37.2° |
| C1' | N1 | C6 | H6 | 0.5° | 0.0° |
| O4' | C1' | N1 | C2 | 155.6° | 49.0° |
| C1' | O4' | C4' | C5' | 144.9° | 145.9° |
| O4' | C1' | N1 | C6 | 25.2° | 131.0° |
| C1' | O4' | C4' | H4' | 90.7° | 93.0° |
| O4' | C1' | C2' | H2' | 143.0° | 81.2° |
| N1 | C2 | N3 | C4 | 0.3° | 0.3° |
| C2 | N1 | C6 | C5 | 0.3° | 0.0° |
| C2 | N1 | C1' | H1' | 43.4° | 172.1° |
| C2 | N1 | C6 | H6 | 179.8° | 180.0° |
| N1 | C2 | N3 | H2 | 179.7° | 179.7° |
| N3 | C2 | N1 | C6 | 0.4° | 0.3° |
| C2 | N3 | C4 | H2 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.1° |
| C2 | N3 | C4 | N4 | 180.0° | 179.9° |
| O4' | C4' | C5' | H4' | 126.6° | 121.1° |
| O4' | C4' | C5' | O5' | 22.2° | 66.5° |
| O4' | C4' | C5' | H5' | 97.3° | 53.5° |
| O4' | C4' | C5' | H5'' | 141.8° | 173.5° |
| O4' | C4' | C3' | H3' | 72.2° | 116.6° |
| C4' | O4' | C1' | H1' | 115.4° | 78.5° |
| C4' | C5' | O5' | H5' | 119.5° | 120.0° |
| C4' | C5' | O5' | H5'' | 119.5° | 120.0° |
| C4' | C5' | O5' | P | 158.8° | 180.0° |
| C4' | C5' | H5' | H5'' | 121.4° | 120.0° |
| C5' | C4' | C3' | H3' | 44.8° | 2.8° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.1° | 0.3° |
| C6 | N1 | C1' | H1' | 137.3° | 7.9° |
| N1 | C6 | C5 | H5 | 179.9° | 180.0° |
| N3 | C4 | C5 | C6 | 0.0° | 0.2° |
| N3 | C4 | C5 | N4 | 179.9° | 180.0° |
| N3 | C4 | N4 | OAC | 155.8° | 180.0° |
| N3 | C4 | C5 | H5 | 180.0° | 180.0° |
| C5' | O5' | P | OP1 | 24.7° | 55.0° |
| C5' | O5' | P | OP3 | 147.0° | 65.0° |
| C5' | O5' | P | OP2 | 94.3° | 175.0° |
| O5' | C5' | H5' | H5'' | 121.4° | 120.0° |
| O5' | C5' | C4' | H4' | 148.8° | 54.6° |
| C6 | C5 | C4 | H5 | 180.0° | 179.8° |
| C6 | C5 | C4 | N4 | 179.9° | 179.8° |
| C5 | C4 | N4 | OAC | 24.2° | 0.0° |
| C4 | C5 | C6 | H6 | 180.0° | 179.7° |
| C5 | C4 | N3 | H2 | 179.9° | 180.0° |
| N4 | C4 | C5 | H5 | 0.1° | 0.0° |
| N4 | C4 | N3 | H2 | 0.0° | 0.0° |
| C4 | N4 | OAC | H1 | 180.0° | 180.0° |
| O5' | P | OP1 | OP3 | 121.5° | 120.0° |
| O5' | P | OP1 | OP2 | 117.3° | 120.0° |
| O5' | P | OP3 | OP2 | 117.1° | 120.0° |
| P | O5' | C5' | H5' | 39.3° | 60.0° |
| P | O5' | C5' | H5'' | 81.7° | 60.0° |
| O5' | P | OP3 | HOP3 | 121.8° | 60.0° |
| O5' | P | OP2 | HOP2 | 119.3° | 180.0° |
| OP1 | P | OP3 | OP2 | 121.2° | 120.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP3 | P | OP2 | HOP2 | 122.0° | 60.0° |
| OP2 | P | OP3 | HOP3 | 121.2° | 60.0° |
| H5' | C5' | C4' | H4' | 29.3° | 174.6° |
| H5'' | C5' | C4' | H4' | 91.7° | 65.4° |
| H4' | C4' | C3' | H3' | 166.3° | 123.9° |
| H3' | C3' | O3' | HO3' | 56.6° | 57.4° |
| H3' | C3' | C2' | H2' | 46.2° | 21.3° |
| H2' | C2' | O2' | HO2' | 58.1° | 62.1° |
| H2' | C2' | C1' | H1' | 101.1° | 160.1° |
| H5 | C5 | C6 | H6 | 0.1° | 0.0° |
