7NO
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CB | CG | sing | 1.53Å | 1.53Å | |
CB | CA | sing | 1.53Å | 1.53Å | |
CG | SD | sing | 1.81Å | 1.80Å | |
O | C | doub | 1.21Å | 1.22Å | |
N | CA | sing | 1.47Å | 1.45Å | |
CA | C | sing | 1.51Å | 1.52Å | |
CE | SD | sing | 1.81Å | 1.80Å | |
C | O3' | sing | 1.34Å | 1.51Å | |
O3' | C3' | sing | 1.45Å | 1.43Å | |
OP1 | P | doub | 1.48Å | 1.49Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | C4' | sing | 1.54Å | 1.53Å | |
O2' | C2' | sing | 1.43Å | 1.41Å | |
OP2 | P | sing | 1.61Å | 1.49Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
O5' | C5' | sing | 1.43Å | 1.45Å | |
C2' | C1' | sing | 1.55Å | 1.53Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C1' | O4' | sing | 1.44Å | 1.42Å | |
C1' | N9 | sing | 1.46Å | 1.47Å | |
N3 | C2 | doub | 1.32Å | 1.33Å | Aromatic |
N3 | C4 | sing | 1.33Å | 1.35Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.34Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
C4 | C5 | doub | 1.40Å | 1.38Å | Aromatic |
N1 | C6 | doub | 1.33Å | 1.35Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.41Å | Aromatic |
C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.33Å | |
P | O1 | sing | 1.61Å | 1.62Å | |
C8 | H1 | sing | 1.08Å | 1.08Å | |
OP2 | H2 | sing | 0.97Å | 0.95Å | |
C5' | H3 | sing | 1.09Å | 1.10Å | |
C5' | H4 | sing | 1.09Å | 1.10Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C3' | H6 | sing | 1.09Å | 1.10Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
O2' | H8 | sing | 0.97Å | 0.95Å | |
C1' | H9 | sing | 1.09Å | 1.10Å | |
C2 | H10 | sing | 1.08Å | 1.08Å | |
N6 | H11 | sing | 0.97Å | 1.00Å | |
N6 | H12 | sing | 0.97Å | 1.00Å | |
N | H13 | sing | 1.01Å | 1.00Å | |
N | H14 | sing | 1.01Å | 1.00Å | |
CA | H16 | sing | 1.09Å | 1.10Å | |
CB | H17 | sing | 1.09Å | 1.10Å | |
CB | H18 | sing | 1.09Å | 1.10Å | |
CG | H19 | sing | 1.09Å | 1.10Å | |
CG | H20 | sing | 1.09Å | 1.10Å | |
CE | H21 | sing | 1.09Å | 1.10Å | |
CE | H22 | sing | 1.09Å | 1.10Å | |
CE | H23 | sing | 1.09Å | 1.10Å | |
O1 | H24 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CG | CB | CA | 114.0° | 109.5° |
CB | CG | SD | 112.7° | 109.5° |
CG | CB | H17 | 108.3° | 109.5° |
CG | CB | H18 | 108.3° | 109.5° |
CB | CG | H19 | 108.7° | 109.5° |
CB | CG | H20 | 108.7° | 109.5° |
CB | CA | N | 110.6° | 109.5° |
CB | CA | C | 112.3° | 109.5° |
CB | CA | H16 | 108.1° | 109.5° |
CA | CB | H17 | 108.3° | 109.5° |
CA | CB | H18 | 108.3° | 109.5° |
CG | SD | CE | 100.9° | 103.0° |
SD | CG | H19 | 108.7° | 109.5° |
SD | CG | H20 | 108.6° | 109.5° |
O | C | CA | 122.1° | 120.0° |
O | C | O3' | 95.5° | 120.0° |
N | CA | C | 108.3° | 109.4° |
CA | N | H13 | 109.5° | 111.0° |
CA | N | H14 | 109.4° | 111.0° |
N | CA | H16 | 109.2° | 109.5° |
CA | C | O3' | 135.4° | 120.0° |
C | CA | H16 | 108.2° | 109.5° |
SD | CE | H21 | 109.5° | 109.5° |
SD | CE | H22 | 109.5° | 109.5° |
SD | CE | H23 | 109.5° | 109.5° |
C | O3' | C3' | 159.0° | 117.0° |
O3' | C3' | C2' | 112.1° | 110.4° |
O3' | C3' | C4' | 109.9° | 110.5° |
O3' | C3' | H6 | 111.4° | 110.6° |
OP1 | P | OP2 | 119.7° | 109.5° |
OP1 | P | O5' | 108.1° | 109.5° |
OP1 | P | O1 | 108.6° | 109.5° |
C2' | C3' | C4' | 103.1° | 104.2° |
C3' | C2' | O2' | 114.4° | 110.9° |
C3' | C2' | C1' | 101.8° | 102.1° |
C2' | C3' | H6 | 110.0° | 110.5° |
C3' | C2' | H7 | 109.2° | 110.9° |
C3' | C4' | C5' | 115.9° | 109.8° |
C3' | C4' | O4' | 106.3° | 107.3° |
C3' | C4' | H5 | 107.8° | 110.1° |
C4' | C3' | H6 | 110.0° | 110.6° |
O2' | C2' | C1' | 111.0° | 110.9° |
O2' | C2' | H7 | 110.8° | 110.8° |
C2' | O2' | H8 | 109.5° | 114.0° |
OP2 | P | O5' | 108.0° | 109.5° |
OP2 | P | O1 | 108.1° | 109.4° |
P | OP2 | H2 | 109.5° | 114.0° |
P | O5' | C5' | 122.6° | 123.0° |
O5' | P | O1 | 103.1° | 109.5° |
O5' | C5' | C4' | 110.4° | 109.5° |
O5' | C5' | H3 | 109.2° | 109.4° |
O5' | C5' | H4 | 109.2° | 109.5° |
C2' | C1' | O4' | 105.4° | 103.4° |
C2' | C1' | N9 | 114.2° | 110.6° |
C1' | C2' | H7 | 109.2° | 110.9° |
C2' | C1' | H9 | 108.8° | 110.6° |
C5' | C4' | O4' | 109.8° | 109.9° |
C4' | C5' | H3 | 109.2° | 109.5° |
C4' | C5' | H4 | 109.2° | 109.5° |
C5' | C4' | H5 | 108.0° | 109.9° |
C4' | O4' | C1' | 109.7° | 107.0° |
O4' | C4' | H5 | 108.8° | 109.9° |
O4' | C1' | N9 | 108.5° | 110.6° |
O4' | C1' | H9 | 110.3° | 110.6° |
C1' | N9 | C4 | 127.7° | 126.3° |
C1' | N9 | C8 | 126.6° | 126.3° |
N9 | C1' | H9 | 109.6° | 110.7° |
C2 | N3 | C4 | 110.6° | 120.6° |
N3 | C2 | N1 | 129.3° | 122.5° |
N3 | C2 | H10 | 115.3° | 118.8° |
N3 | C4 | N9 | 127.5° | 134.9° |
N3 | C4 | C5 | 126.7° | 119.1° |
C2 | N1 | C6 | 118.5° | 121.1° |
N1 | C2 | H10 | 115.3° | 118.7° |
C4 | N9 | C8 | 105.7° | 107.4° |
N9 | C4 | C5 | 105.8° | 106.0° |
N9 | C8 | N7 | 113.9° | 110.0° |
N9 | C8 | H1 | 123.0° | 125.0° |
C4 | C5 | C6 | 117.1° | 118.2° |
C4 | C5 | N7 | 110.7° | 107.1° |
N1 | C6 | C5 | 117.7° | 118.5° |
N1 | C6 | N6 | 118.6° | 120.7° |
C8 | N7 | C5 | 103.9° | 109.4° |
N7 | C8 | H1 | 123.1° | 125.0° |
C6 | C5 | N7 | 132.2° | 134.7° |
C5 | C6 | N6 | 123.6° | 120.8° |
C6 | N6 | H11 | 109.5° | 120.0° |
C6 | N6 | H12 | 109.5° | 120.0° |
P | O1 | H24 | 109.5° | 114.1° |
H3 | C5' | H4 | 109.5° | 109.5° |
H11 | N6 | H12 | 109.5° | 120.0° |
H13 | N | H14 | 109.4° | 111.0° |
H17 | CB | H18 | 109.5° | 109.4° |
H19 | CG | H20 | 109.5° | 109.4° |
H21 | CE | H22 | 109.5° | 109.5° |
H21 | CE | H23 | 109.4° | 109.5° |
H22 | CE | H23 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CG | CB | CA | H17 | 120.7° | 120.0° |
CG | CB | CA | H18 | 120.7° | 120.1° |
CB | CG | SD | H19 | 120.5° | 120.0° |
CB | CG | SD | H20 | 120.5° | 120.0° |
CG | CB | CA | N | 75.2° | 65.0° |
CG | CB | CA | C | 163.6° | 175.0° |
CB | CG | SD | CE | 73.8° | 180.0° |
CG | CB | CA | H16 | 44.3° | 55.0° |
CG | CB | H17 | H18 | 117.9° | 120.0° |
CB | CG | H19 | H20 | 118.5° | 120.0° |
CA | CB | CG | SD | 54.2° | 180.0° |
CB | CA | C | O | 64.6° | 100.0° |
CB | CA | N | C | 123.5° | 120.0° |
CB | CA | N | H16 | 118.8° | 120.0° |
CB | CA | C | H16 | 119.2° | 120.0° |
CB | CA | C | O3' | 152.8° | 80.0° |
CB | CA | N | H13 | 180.0° | 176.0° |
CB | CA | N | H14 | 60.0° | 59.9° |
CA | CB | H17 | H18 | 117.9° | 120.0° |
CA | CB | CG | H19 | 66.3° | 60.0° |
CA | CB | CG | H20 | 174.6° | 60.0° |
SD | CG | CB | H17 | 66.5° | 60.0° |
SD | CG | CB | H18 | 174.8° | 60.0° |
SD | CG | H19 | H20 | 118.5° | 120.0° |
CG | SD | CE | H21 | 180.0° | 60.0° |
CG | SD | CE | H22 | 60.0° | 60.0° |
CG | SD | CE | H23 | 60.0° | 180.0° |
O | C | CA | N | 57.9° | 20.0° |
O | C | CA | O3' | 142.7° | 180.0° |
O | C | O3' | C3' | 150.5° | 0.0° |
O | C | CA | H16 | 176.2° | 140.0° |
N | CA | C | H16 | 118.3° | 120.0° |
N | CA | C | O3' | 84.8° | 160.0° |
CA | N | H13 | H14 | 120.0° | 124.0° |
N | CA | CB | H17 | 164.1° | 55.0° |
N | CA | CB | H18 | 45.5° | 174.9° |
CA | C | O3' | C3' | 60.5° | 180.0° |
C | CA | N | H13 | 56.5° | 64.0° |
C | CA | N | H14 | 63.5° | 60.1° |
C | CA | CB | H17 | 42.9° | 65.0° |
C | CA | CB | H18 | 75.7° | 55.0° |
CE | SD | CG | H19 | 165.7° | 60.0° |
CE | SD | CG | H20 | 46.7° | 60.0° |
SD | CE | H21 | H22 | 120.0° | 120.0° |
SD | CE | H21 | H23 | 120.0° | 120.0° |
SD | CE | H22 | H23 | 120.0° | 120.0° |
C | O3' | C3' | C2' | 138.7° | 91.5° |
C | O3' | C3' | C4' | 24.7° | 153.8° |
C | O3' | C3' | H6 | 97.5° | 31.1° |
O3' | C | CA | H16 | 33.6° | 40.0° |
O3' | C3' | C2' | C4' | 118.2° | 118.6° |
O3' | C3' | C2' | H6 | 124.6° | 122.7° |
O3' | C3' | C4' | H6 | 123.0° | 122.7° |
O3' | C3' | C2' | O2' | 35.2° | 20.4° |
O3' | C3' | C2' | C1' | 84.6° | 97.8° |
O3' | C3' | C4' | C5' | 138.1° | 119.9° |
O3' | C3' | C4' | O4' | 99.5° | 120.7° |
O3' | C3' | C4' | H5 | 17.0° | 1.1° |
O3' | C3' | C2' | H7 | 160.1° | 144.0° |
OP1 | P | OP2 | O5' | 124.1° | 120.0° |
OP1 | P | OP2 | O1 | 125.0° | 120.0° |
OP1 | P | O5' | O1 | 114.9° | 120.0° |
OP1 | P | O5' | C5' | 169.6° | 54.9° |
OP1 | P | OP2 | H2 | 0.0° | 180.0° |
OP1 | P | O1 | H24 | 0.0° | 60.0° |
C2' | C3' | C4' | H6 | 117.3° | 118.7° |
C3' | C2' | O2' | C1' | 114.5° | 112.7° |
C3' | C2' | O2' | H7 | 124.0° | 123.6° |
C3' | C2' | C1' | H7 | 115.4° | 118.2° |
C2' | C3' | C4' | C5' | 102.2° | 121.5° |
C2' | C3' | C4' | O4' | 20.2° | 2.1° |
C3' | C2' | C1' | O4' | 36.3° | 37.0° |
C3' | C2' | C1' | N9 | 155.2° | 155.5° |
C2' | C3' | C4' | H5 | 136.7° | 117.4° |
C3' | C2' | O2' | H8 | 180.0° | 180.0° |
C3' | C2' | C1' | H9 | 82.1° | 81.4° |
C4' | C3' | C2' | O2' | 153.4° | 139.0° |
C3' | C4' | C5' | O5' | 86.5° | 175.8° |
C4' | C3' | C2' | C1' | 33.6° | 20.8° |
C3' | C4' | C5' | O4' | 120.5° | 117.8° |
C3' | C4' | C5' | H5 | 121.1° | 121.2° |
C3' | C4' | O4' | H5 | 115.9° | 119.6° |
C3' | C4' | O4' | C1' | 2.6° | 26.6° |
C3' | C4' | C5' | H3 | 153.4° | 64.3° |
C3' | C4' | C5' | H4 | 33.7° | 55.7° |
C4' | C3' | C2' | H7 | 81.7° | 97.4° |
O2' | C2' | C1' | H7 | 122.4° | 123.6° |
O2' | C2' | C1' | O4' | 158.4° | 155.2° |
O2' | C2' | C1' | N9 | 82.6° | 86.3° |
O2' | C2' | C3' | H6 | 89.3° | 102.2° |
O2' | C2' | C1' | H9 | 40.1° | 36.8° |
OP2 | P | O5' | O1 | 114.3° | 120.0° |
OP2 | P | O5' | C5' | 59.5° | 65.1° |
OP2 | P | O1 | H24 | 131.4° | 60.0° |
P | O5' | C5' | C4' | 144.7° | 180.0° |
O5' | P | OP2 | H2 | 124.1° | 59.9° |
P | O5' | C5' | H3 | 95.1° | 60.1° |
P | O5' | C5' | H4 | 24.6° | 59.9° |
O5' | P | O1 | H24 | 114.5° | 179.9° |
O5' | C5' | C4' | H3 | 120.1° | 119.9° |
O5' | C5' | C4' | H4 | 120.1° | 120.1° |
O5' | C5' | C4' | O4' | 153.1° | 66.4° |
C5' | O5' | P | O1 | 54.7° | 174.9° |
O5' | C5' | H3 | H4 | 119.5° | 120.0° |
O5' | C5' | C4' | H5 | 34.6° | 54.6° |
C2' | C1' | O4' | C4' | 24.6° | 40.1° |
C2' | C1' | O4' | N9 | 122.7° | 118.5° |
C2' | C1' | O4' | H9 | 117.3° | 118.5° |
C2' | C1' | N9 | H9 | 122.3° | 123.0° |
C2' | C1' | N9 | C4 | 56.2° | 85.0° |
C2' | C1' | N9 | C8 | 123.8° | 95.0° |
C1' | C2' | C3' | H6 | 150.9° | 139.6° |
C1' | C2' | O2' | H8 | 65.5° | 67.2° |
C5' | C4' | O4' | H5 | 118.0° | 121.0° |
C5' | C4' | O4' | C1' | 128.7° | 146.0° |
C4' | C5' | H3 | H4 | 119.6° | 120.0° |
C5' | C4' | C3' | H6 | 15.1° | 2.8° |
C4' | O4' | C1' | N9 | 147.2° | 158.6° |
O4' | C4' | C5' | H3 | 32.9° | 53.5° |
O4' | C4' | C5' | H4 | 86.8° | 173.5° |
O4' | C4' | C3' | H6 | 137.5° | 116.6° |
C4' | O4' | C1' | H9 | 92.8° | 78.4° |
O4' | C1' | N9 | H9 | 120.5° | 123.0° |
O4' | C1' | N9 | C4 | 173.4° | 160.9° |
O4' | C1' | N9 | C8 | 6.6° | 19.0° |
C1' | O4' | C4' | H5 | 113.3° | 93.1° |
O4' | C1' | C2' | H7 | 79.1° | 81.2° |
C1' | N9 | C4 | N3 | 0.3° | 0.0° |
C1' | N9 | C4 | C8 | 180.0° | 180.0° |
C1' | N9 | C4 | C5 | 179.4° | 180.0° |
C1' | N9 | C8 | N7 | 179.2° | 180.0° |
C1' | N9 | C8 | H1 | 0.8° | 0.1° |
N9 | C1' | C2' | H7 | 39.8° | 37.3° |
N3 | C2 | N1 | H10 | 180.0° | 179.9° |
C2 | N3 | C4 | N9 | 179.8° | 179.9° |
C2 | N3 | C4 | C5 | 0.2° | 0.1° |
N3 | C2 | N1 | C6 | 0.0° | 0.1° |
C4 | N3 | C2 | N1 | 0.1° | 0.1° |
N3 | C4 | N9 | C5 | 179.7° | 180.0° |
N3 | C4 | N9 | C8 | 179.7° | 180.0° |
N3 | C4 | C5 | C6 | 0.5° | 0.0° |
N3 | C4 | C5 | N7 | 179.9° | 180.0° |
C4 | N3 | C2 | H10 | 179.9° | 180.0° |
C2 | N1 | C6 | C5 | 0.2° | 0.0° |
C2 | N1 | C6 | N6 | 179.9° | 180.0° |
C4 | N9 | C8 | N7 | 0.8° | 0.0° |
N9 | C4 | C5 | C6 | 179.9° | 180.0° |
N9 | C4 | C5 | N7 | 0.3° | 0.0° |
C4 | N9 | C8 | H1 | 179.2° | 180.0° |
C4 | N9 | C1' | H9 | 66.1° | 38.0° |
C8 | N9 | C4 | C5 | 0.6° | 0.0° |
N9 | C8 | N7 | H1 | 180.0° | 179.9° |
N9 | C8 | N7 | C5 | 0.6° | 0.0° |
C8 | N9 | C1' | H9 | 113.9° | 142.0° |
C4 | C5 | C6 | N1 | 0.4° | 0.0° |
C4 | C5 | N7 | C8 | 0.2° | 0.0° |
C4 | C5 | C6 | N7 | 179.5° | 180.0° |
C4 | C5 | C6 | N6 | 179.9° | 180.0° |
N1 | C6 | C5 | N6 | 179.7° | 180.0° |
N1 | C6 | C5 | N7 | 179.9° | 180.0° |
C6 | N1 | C2 | H10 | 179.9° | 180.0° |
N1 | C6 | N6 | H11 | 0.0° | 0.0° |
N1 | C6 | N6 | H12 | 120.0° | 180.0° |
C8 | N7 | C5 | C6 | 179.3° | 180.0° |
C5 | C6 | N6 | H11 | 179.7° | 180.0° |
C5 | C6 | N6 | H12 | 60.3° | 0.0° |
N7 | C5 | C6 | N6 | 0.4° | 0.0° |
C5 | N7 | C8 | H1 | 179.4° | 180.0° |
C6 | N6 | H11 | H12 | 120.0° | 180.0° |
O1 | P | OP2 | H2 | 125.0° | 60.1° |
H3 | C5' | C4' | H5 | 85.5° | 174.5° |
H4 | C5' | C4' | H5 | 154.7° | 65.5° |
H5 | C4' | C3' | H6 | 106.0° | 123.9° |
H6 | C3' | C2' | H7 | 35.5° | 21.4° |
H7 | C2' | O2' | H8 | 56.0° | 56.4° |
H7 | C2' | C1' | H9 | 162.5° | 160.4° |
H13 | N | CA | H16 | 61.2° | 56.0° |
H14 | N | CA | H16 | 178.8° | 180.0° |
H16 | CA | CB | H17 | 76.4° | 175.0° |
H16 | CA | CB | H18 | 165.0° | 65.0° |
H17 | CB | CG | H19 | 173.0° | 180.0° |
H17 | CB | CG | H20 | 53.9° | 60.0° |
H18 | CB | CG | H19 | 54.4° | 60.1° |
H18 | CB | CG | H20 | 64.7° | 180.0° |
H21 | CE | H22 | H23 | 120.0° | 120.0° |