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Summary Geometry Related PDB entries

7NJ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O08	B05	sing	1.42Å	1.67Å
B05	O07	sing	1.42Å	1.67Å
B05	C04	sing	1.57Å	1.66Å
C04	C03	doub	1.39Å	1.37Å	Aromatic
C04	C09	sing	1.39Å	1.38Å	Aromatic
C03	C02	sing	1.38Å	1.37Å	Aromatic
C09	C10	doub	1.38Å	1.37Å	Aromatic
C02	BR	sing	1.89Å	1.91Å
C02	C11	doub	1.38Å	1.38Å	Aromatic
C10	C11	sing	1.38Å	1.38Å	Aromatic
C11	C12	sing	1.51Å	1.50Å
C03	H1	sing	1.08Å	1.08Å
O07	H2	sing	0.97Å	0.95Å
O08	H3	sing	0.97Å	0.95Å
C09	H4	sing	1.08Å	1.08Å
C10	H5	sing	1.08Å	1.08Å
C12	H6	sing	1.09Å	1.10Å
C12	H7	sing	1.09Å	1.10Å
C12	H8	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O08	B05	O07	106.6°	120.0°
O08	B05	C04	109.2°	120.0°
B05	O08	H3	109.5°	114.0°
O07	B05	C04	105.1°	120.0°
B05	O07	H2	109.5°	114.0°
B05	C04	C03	119.4°	120.1°
B05	C04	C09	118.2°	120.1°
C03	C04	C09	122.4°	119.8°
C04	C03	C02	118.2°	119.9°
C04	C03	H1	120.9°	120.1°
C04	C09	C10	119.1°	119.9°
C04	C09	H4	120.4°	120.0°
C03	C02	BR	115.5°	120.0°
C03	C02	C11	120.1°	120.1°
C02	C03	H1	120.9°	120.0°
C09	C10	C11	119.0°	120.2°
C10	C09	H4	120.4°	120.1°
C09	C10	H5	120.5°	120.0°
BR	C02	C11	124.4°	120.0°
C02	C11	C10	121.1°	120.2°
C02	C11	C12	122.0°	119.9°
C10	C11	C12	116.9°	119.9°
C11	C10	H5	120.5°	119.9°
C11	C12	H6	109.5°	109.5°
C11	C12	H7	109.5°	109.5°
C11	C12	H8	109.5°	109.4°
H6	C12	H7	109.5°	109.5°
H6	C12	H8	109.4°	109.4°
H7	C12	H8	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O08	B05	O07	C04	115.9°	180.0°
O08	B05	C04	C03	26.5°	180.0°
O08	B05	C04	C09	153.8°	0.0°
O08	B05	O07	H2	180.0°	0.0°
O07	B05	C04	C03	87.6°	0.0°
O07	B05	C04	C09	92.1°	180.0°
O07	B05	O08	H3	180.0°	0.0°
B05	C04	C03	C09	179.7°	180.0°
B05	C04	C03	C02	179.8°	180.0°
B05	C04	C09	C10	179.9°	180.0°
B05	C04	C03	H1	0.2°	0.0°
C04	B05	O07	H2	64.1°	180.0°
C04	B05	O08	H3	66.9°	180.0°
B05	C04	C09	H4	0.1°	0.1°
C04	C03	C02	H1	180.0°	179.9°
C03	C04	C09	C10	0.4°	0.0°
C04	C03	C02	BR	179.9°	180.0°
C04	C03	C02	C11	0.4°	0.2°
C03	C04	C09	H4	179.6°	179.9°
C09	C04	C03	C02	0.4°	0.0°
C04	C09	C10	H4	180.0°	180.0°
C04	C09	C10	C11	0.3°	0.2°
C09	C04	C03	H1	179.6°	180.0°
C04	C09	C10	H5	179.7°	180.0°
C03	C02	BR	C11	179.6°	179.7°
C03	C02	C11	C10	0.3°	0.5°
C03	C02	C11	C12	179.4°	179.7°
C09	C10	C11	C02	0.2°	0.5°
C09	C10	C11	H5	180.0°	179.8°
C09	C10	C11	C12	179.4°	179.7°
BR	C02	C11	C10	179.8°	179.7°
BR	C02	C11	C12	1.0°	0.0°
BR	C02	C03	H1	0.1°	0.0°
C02	C11	C10	C12	179.2°	179.7°
C11	C02	C03	H1	179.7°	179.7°
C02	C11	C10	H5	179.8°	179.7°
C02	C11	C12	H6	90.4°	89.9°
C02	C11	C12	H7	149.6°	150.0°
C02	C11	C12	H8	29.5°	30.0°
C11	C10	C09	H4	179.7°	179.8°
C10	C11	C12	H6	90.4°	89.8°
C10	C11	C12	H7	29.6°	30.3°
C10	C11	C12	H8	149.6°	150.3°
C12	C11	C10	H5	0.6°	0.1°
C11	C12	H6	H7	120.0°	120.1°
C11	C12	H6	H8	120.0°	120.0°
C11	C12	H7	H8	120.0°	120.0°
H4	C09	C10	H5	0.3°	0.0°
H6	C12	H7	H8	120.0°	120.0°

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