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SummaryGeometryRelated PDB entries

7NF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C52C53sing1.53Å1.37Å
C52O9sing1.45Å1.46Å
O9C51sing1.35Å1.34Å
O10C51doub1.22Å1.21Å
C51C50sing1.47Å1.49Å
N9C50doub1.30Å1.32ÅAromatic
N9C48sing1.32Å1.39ÅAromatic
C50Ssing1.76Å1.73ÅAromatic
C47C48sing1.47Å1.49Å
C47O11doub1.22Å1.22Å
C48C49doub1.37Å1.36ÅAromatic
SC49sing1.71Å1.72ÅAromatic
C52H2sing1.09Å1.10Å
C52H3sing1.09Å1.10Å
C53H4sing1.09Å1.10Å
C53H5sing1.09Å1.10Å
C53H6sing1.09Å1.10Å
C49H7sing1.08Å1.08Å
C47OXTsing1.35Å1.34Å
OXTH1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C53C52O9112.2°109.5°
C53C52H2108.8°109.5°
C53C52H3108.8°109.4°
C52C53H4109.5°109.4°
C52C53H5109.5°109.4°
C52C53H6109.5°109.5°
C52O9C51116.6°117.0°
O9C52H2108.8°109.5°
O9C52H3108.8°109.5°
O9C51O10124.0°120.0°
O9C51C50112.5°120.0°
O10C51C50123.5°120.0°
C51C50N9111.1°125.2°
C51C50S133.7°125.2°
C50N9C48109.8°116.1°
N9C50S115.1°109.6°
N9C48C47121.2°122.6°
N9C48C49115.6°114.9°
C50SC4989.1°90.6°
C48C47O11120.8°120.0°
C47C48C49123.2°122.6°
C48C47OXT116.3°120.0°
O11C47OXT122.8°120.0°
C48C49S110.3°108.9°
C48C49H7124.9°125.5°
SC49H7124.8°125.6°
H2C52H3109.5°109.4°
H4C53H5109.5°109.5°
H4C53H6109.5°109.5°
H5C53H6109.4°109.5°
C47OXTH1109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C53C52O9H2120.4°120.0°
C53C52O9H3120.4°120.0°
C53C52O9C5191.1°180.0°
C53C52H2H3118.8°119.9°
C52C53H4H5120.0°120.0°
C52C53H4H6120.0°120.0°
C52C53H5H6120.0°120.0°
C52O9C51O1012.9°0.1°
C52O9C51C50168.6°180.0°
O9C52H2H3118.7°120.0°
O9C52C53H4180.0°60.0°
O9C52C53H560.0°60.0°
O9C52C53H660.0°180.0°
O9C51O10C50178.4°179.9°
O9C51C50N931.9°180.0°
O9C51C50S144.1°0.0°
C51O9C52H2148.4°59.9°
C51O9C52H329.2°60.1°
O10C51C50N9149.5°0.1°
O10C51C50S34.4°180.0°
C51C50N9S176.9°180.0°
C51C50N9C48175.4°180.0°
C51C50SC49174.6°179.8°
C50N9C48C47177.6°180.0°
C50N9C48C490.8°0.2°
N9C50SC491.3°0.2°
C48N9C50S1.5°0.0°
N9C48C47C49178.3°179.7°
N9C48C47O11163.1°179.7°
N9C48C49S0.1°0.4°
N9C48C49H7179.9°179.7°
N9C48C47OXT18.0°0.6°
C50SC49C480.8°0.3°
C50SC49H7179.2°179.8°
C48C47O11OXT178.9°179.7°
C47C48C49S178.5°179.9°
C47C48C49H71.4°0.0°
C48C47OXTH1178.9°180.0°
O11C47C48C4915.3°0.0°
O11C47OXTH10.0°0.3°
C48C49SH7180.0°179.9°
C49C48C47OXT163.7°179.7°
H2C52C53H459.6°180.0°
H2C52C53H560.4°60.1°
H2C52C53H6179.6°60.0°
H3C52C53H459.6°60.0°
H3C52C53H5179.6°180.0°
H3C52C53H660.4°60.0°
H4C53H5H6120.0°120.0°

223532

PDB entries from 2024-08-07

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