7MG
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.48Å | |
P | OP2 | sing | 1.61Å | 1.49Å | |
P | OP3 | sing | 1.61Å | 1.60Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.42Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.47Å | 1.46Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.47Å | 1.45Å | |
N9 | C4 | sing | 1.38Å | 1.41Å | |
C8 | N7 | sing | 1.47Å | 1.42Å | |
C8 | H81 | sing | 1.09Å | 1.12Å | |
C8 | H82 | sing | 1.09Å | 1.11Å | |
N7 | C5 | sing | 1.41Å | 1.38Å | |
N7 | CM7 | sing | 1.47Å | 1.50Å | |
C5 | C6 | sing | 1.40Å | 1.39Å | |
C5 | C4 | doub | 1.39Å | 1.40Å | |
C6 | O6 | doub | 1.22Å | 1.21Å | |
C6 | N1 | sing | 1.35Å | 1.38Å | |
N1 | C2 | sing | 1.36Å | 1.38Å | |
N1 | HN1 | sing | 0.97Å | 1.02Å | |
C2 | N2 | sing | 1.37Å | 1.36Å | |
C2 | N3 | doub | 1.31Å | 1.32Å | |
N2 | HN21 | sing | 0.97Å | 1.02Å | |
N2 | HN22 | sing | 0.97Å | 1.02Å | |
N3 | C4 | sing | 1.34Å | 1.34Å | |
CM7 | HM71 | sing | 1.09Å | 1.11Å | |
CM7 | HM72 | sing | 1.09Å | 1.12Å | |
CM7 | HM73 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.5° | 109.4° |
OP1 | P | OP3 | 109.2° | 109.5° |
OP1 | P | O5' | 108.4° | 109.5° |
OP2 | P | OP3 | 108.1° | 109.4° |
OP2 | P | O5' | 107.5° | 109.5° |
P | OP2 | HOP2 | 119.5° | 106.8° |
OP3 | P | O5' | 102.7° | 109.5° |
P | OP3 | HOP3 | 109.3° | 106.9° |
P | O5' | C5' | 119.6° | 106.8° |
O5' | C5' | C4' | 110.4° | 109.5° |
O5' | C5' | H5' | 111.9° | 109.4° |
O5' | C5' | H5'' | 111.9° | 109.5° |
C4' | C5' | H5' | 111.9° | 109.5° |
C4' | C5' | H5'' | 111.9° | 109.4° |
C5' | C4' | O4' | 108.4° | 110.3° |
C5' | C4' | C3' | 115.9° | 110.5° |
C5' | C4' | H4' | 104.7° | 110.3° |
H5' | C5' | H5'' | 98.5° | 109.4° |
O4' | C4' | C3' | 105.8° | 104.8° |
O4' | C4' | H4' | 115.0° | 110.3° |
C4' | O4' | C1' | 109.5° | 105.2° |
C3' | C4' | H4' | 107.4° | 110.4° |
C4' | C3' | O3' | 109.7° | 110.5° |
C4' | C3' | C2' | 101.8° | 104.1° |
C4' | C3' | H3' | 114.8° | 110.5° |
O4' | C1' | C2' | 104.6° | 104.9° |
O4' | C1' | N9 | 107.8° | 110.3° |
O4' | C1' | H1' | 115.2° | 110.4° |
O3' | C3' | C2' | 111.4° | 110.6° |
O3' | C3' | H3' | 105.9° | 110.5° |
C3' | O3' | HO3' | 109.7° | 106.8° |
C2' | C3' | H3' | 113.3° | 110.6° |
C3' | C2' | O2' | 115.5° | 110.5° |
C3' | C2' | C1' | 100.9° | 104.0° |
C3' | C2' | H2' | 111.9° | 110.5° |
O2' | C2' | C1' | 111.2° | 110.8° |
O2' | C2' | H2' | 101.8° | 110.4° |
C2' | O2' | HO2' | 115.4° | 106.8° |
C1' | C2' | H2' | 116.1° | 110.4° |
C2' | C1' | N9 | 113.9° | 110.4° |
C2' | C1' | H1' | 109.3° | 110.3° |
N9 | C1' | H1' | 106.2° | 110.3° |
C1' | N9 | C8 | 127.5° | 126.1° |
C1' | N9 | C4 | 125.1° | 126.1° |
C8 | N9 | C4 | 107.4° | 107.8° |
N9 | C8 | N7 | 107.3° | 105.6° |
N9 | C8 | H81 | 113.0° | 110.2° |
N9 | C8 | H82 | 113.0° | 110.3° |
N9 | C4 | C5 | 107.2° | 110.1° |
N9 | C4 | N3 | 124.8° | 130.5° |
N7 | C8 | H81 | 113.0° | 110.2° |
N7 | C8 | H82 | 113.0° | 110.2° |
C8 | N7 | C5 | 106.9° | 106.7° |
C8 | N7 | CM7 | 119.6° | 126.6° |
H81 | C8 | H82 | 97.4° | 110.2° |
C5 | N7 | CM7 | 133.5° | 126.7° |
N7 | C5 | C6 | 129.8° | 131.2° |
N7 | C5 | C4 | 111.1° | 109.8° |
N7 | CM7 | HM71 | 119.6° | 109.4° |
N7 | CM7 | HM72 | 108.6° | 109.5° |
N7 | CM7 | HM73 | 108.6° | 109.5° |
C6 | C5 | C4 | 119.1° | 119.0° |
C5 | C6 | O6 | 127.2° | 120.6° |
C5 | C6 | N1 | 112.3° | 118.8° |
C5 | C4 | N3 | 128.0° | 119.4° |
O6 | C6 | N1 | 120.5° | 120.6° |
C6 | N1 | C2 | 124.7° | 120.0° |
C6 | N1 | HN1 | 117.8° | 120.0° |
C2 | N1 | HN1 | 117.4° | 119.9° |
N1 | C2 | N2 | 116.2° | 119.3° |
N1 | C2 | N3 | 123.8° | 121.5° |
N2 | C2 | N3 | 120.0° | 119.2° |
C2 | N2 | HN21 | 116.2° | 120.0° |
C2 | N2 | HN22 | 109.8° | 120.0° |
C2 | N3 | C4 | 112.1° | 121.3° |
HN21 | N2 | HN22 | 109.8° | 120.0° |
HM71 | CM7 | HM72 | 108.5° | 109.4° |
HM71 | CM7 | HM73 | 108.7° | 109.5° |
HM72 | CM7 | HM73 | 101.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 125.8° | 120.0° |
OP1 | P | OP2 | O5' | 124.0° | 120.0° |
OP1 | P | OP3 | O5' | 115.0° | 120.1° |
OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 179.9° |
OP1 | P | O5' | C5' | 168.3° | 60.0° |
OP2 | P | OP3 | O5' | 113.5° | 119.9° |
OP2 | P | OP3 | HOP3 | 48.4° | 60.0° |
OP2 | P | O5' | C5' | 61.2° | 180.0° |
OP3 | P | OP2 | HOP2 | 54.2° | 60.0° |
OP3 | P | O5' | C5' | 52.8° | 60.1° |
O5' | P | OP2 | HOP2 | 56.1° | 180.0° |
O5' | P | OP3 | HOP3 | 65.1° | 59.9° |
P | O5' | C5' | C4' | 145.5° | 180.0° |
P | O5' | C5' | H5' | 20.3° | 60.0° |
P | O5' | C5' | H5'' | 89.1° | 59.9° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.1° |
O5' | C5' | H5' | H5'' | 117.7° | 120.0° |
O5' | C5' | C4' | O4' | 76.0° | 61.5° |
O5' | C5' | C4' | C3' | 42.8° | 176.9° |
O5' | C5' | C4' | H4' | 160.8° | 60.7° |
C4' | C5' | H5' | H5'' | 117.8° | 119.9° |
C5' | C4' | O4' | C3' | 124.9° | 119.0° |
C5' | C4' | O4' | H4' | 116.7° | 122.2° |
C5' | C4' | C3' | H4' | 116.6° | 122.3° |
C5' | C4' | O4' | C1' | 124.8° | 159.5° |
C5' | C4' | C3' | O3' | 146.8° | 98.3° |
C5' | C4' | C3' | C2' | 95.1° | 142.9° |
C5' | C4' | C3' | H3' | 27.7° | 24.2° |
H5' | C5' | C4' | O4' | 158.7° | 178.5° |
H5' | C5' | C4' | C3' | 82.5° | 63.1° |
H5' | C5' | C4' | H4' | 35.6° | 59.3° |
H5'' | C5' | C4' | O4' | 49.3° | 58.6° |
H5'' | C5' | C4' | C3' | 168.1° | 56.8° |
H5'' | C5' | C4' | H4' | 73.9° | 179.2° |
O4' | C4' | C3' | H4' | 123.3° | 118.8° |
O4' | C4' | C3' | O3' | 93.1° | 142.8° |
O4' | C4' | C3' | C2' | 25.0° | 24.1° |
O4' | C4' | C3' | H3' | 147.8° | 94.7° |
C4' | O4' | C1' | C2' | 25.2° | 40.5° |
C4' | O4' | C1' | N9 | 146.7° | 159.4° |
C4' | O4' | C1' | H1' | 94.9° | 78.4° |
C3' | C4' | O4' | C1' | 0.1° | 40.5° |
C4' | C3' | O3' | C2' | 112.0° | 114.7° |
C4' | C3' | O3' | H3' | 124.5° | 122.6° |
C4' | C3' | C2' | H3' | 123.9° | 118.6° |
C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
C4' | C3' | C2' | O2' | 158.7° | 118.8° |
C4' | C3' | C2' | C1' | 38.8° | 0.1° |
C4' | C3' | C2' | H2' | 85.4° | 118.6° |
H4' | C4' | O4' | C1' | 118.5° | 78.3° |
H4' | C4' | C3' | O3' | 30.2° | 24.0° |
H4' | C4' | C3' | C2' | 148.3° | 94.7° |
H4' | C4' | C3' | H3' | 88.9° | 146.5° |
O4' | C1' | C2' | C3' | 39.9° | 23.9° |
O4' | C1' | C2' | O2' | 162.9° | 142.6° |
O4' | C1' | C2' | N9 | 117.5° | 118.9° |
O4' | C1' | C2' | H1' | 123.9° | 118.9° |
O4' | C1' | C2' | H2' | 81.3° | 94.7° |
O4' | C1' | N9 | H1' | 124.0° | 122.3° |
O4' | C1' | N9 | C8 | 116.7° | 123.0° |
O4' | C1' | N9 | C4 | 63.4° | 57.1° |
O3' | C3' | C2' | H3' | 119.3° | 122.7° |
O3' | C3' | C2' | O2' | 41.9° | 0.2° |
O3' | C3' | C2' | C1' | 78.1° | 118.8° |
O3' | C3' | C2' | H2' | 157.8° | 122.7° |
C2' | C3' | O3' | HO3' | 68.1° | 65.3° |
C3' | C2' | O2' | C1' | 114.1° | 114.7° |
C3' | C2' | O2' | H2' | 121.5° | 122.6° |
C3' | C2' | C1' | H2' | 121.2° | 118.6° |
C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
C3' | C2' | C1' | N9 | 157.4° | 142.8° |
C3' | C2' | C1' | H1' | 84.0° | 95.0° |
H3' | C3' | O3' | HO3' | 55.5° | 57.4° |
H3' | C3' | C2' | O2' | 77.4° | 122.5° |
H3' | C3' | C2' | C1' | 162.6° | 118.5° |
H3' | C3' | C2' | H2' | 38.5° | 0.0° |
O2' | C2' | C1' | H2' | 115.8° | 122.7° |
O2' | C2' | C1' | N9 | 79.6° | 98.5° |
O2' | C2' | C1' | H1' | 39.0° | 23.7° |
C1' | C2' | O2' | HO2' | 65.8° | 176.1° |
C2' | C1' | N9 | H1' | 120.4° | 122.2° |
C2' | C1' | N9 | C8 | 1.1° | 121.5° |
C2' | C1' | N9 | C4 | 178.9° | 58.4° |
H2' | C2' | O2' | HO2' | 58.5° | 61.2° |
H2' | C2' | C1' | N9 | 36.2° | 24.2° |
H2' | C2' | C1' | H1' | 154.8° | 146.4° |
C1' | N9 | C8 | C4 | 180.0° | 180.0° |
C1' | N9 | C8 | N7 | 178.0° | 180.0° |
C1' | N9 | C8 | H81 | 56.7° | 61.0° |
C1' | N9 | C8 | H82 | 52.7° | 60.9° |
C1' | N9 | C4 | C5 | 177.9° | 179.8° |
C1' | N9 | C4 | N3 | 0.9° | 0.0° |
H1' | C1' | N9 | C8 | 119.3° | 0.7° |
H1' | C1' | N9 | C4 | 60.7° | 179.3° |
N9 | C8 | N7 | H81 | 125.3° | 119.0° |
N9 | C8 | N7 | H82 | 125.3° | 119.1° |
N9 | C8 | H81 | H82 | 118.9° | 121.9° |
N9 | C8 | N7 | C5 | 1.1° | 0.3° |
N9 | C8 | N7 | CM7 | 178.9° | 180.0° |
C8 | N9 | C4 | C5 | 2.0° | 0.2° |
C8 | N9 | C4 | N3 | 179.1° | 180.0° |
C4 | N9 | C8 | N7 | 1.9° | 0.0° |
C4 | N9 | C8 | H81 | 123.3° | 119.1° |
C4 | N9 | C8 | H82 | 127.2° | 119.0° |
N9 | C4 | C5 | N7 | 1.4° | 0.4° |
N9 | C4 | C5 | C6 | 178.1° | 180.0° |
N9 | C4 | C5 | N3 | 178.8° | 179.8° |
N9 | C4 | N3 | C2 | 179.1° | 179.7° |
N7 | C8 | H81 | H82 | 118.9° | 121.9° |
C8 | N7 | C5 | CM7 | 180.0° | 179.7° |
C8 | N7 | C5 | C6 | 179.2° | 179.9° |
C8 | N7 | C5 | C4 | 0.2° | 0.4° |
C8 | N7 | CM7 | HM71 | 180.0° | 180.0° |
C8 | N7 | CM7 | HM72 | 54.8° | 60.0° |
C8 | N7 | CM7 | HM73 | 54.7° | 60.0° |
H81 | C8 | N7 | C5 | 124.2° | 119.2° |
H81 | C8 | N7 | CM7 | 55.8° | 61.0° |
H82 | C8 | N7 | C5 | 126.4° | 118.8° |
H82 | C8 | N7 | CM7 | 53.6° | 60.9° |
N7 | C5 | C6 | C4 | 179.4° | 179.5° |
N7 | C5 | C6 | O6 | 0.6° | 0.6° |
N7 | C5 | C6 | N1 | 179.3° | 179.5° |
N7 | C5 | C4 | N3 | 179.8° | 179.8° |
C5 | N7 | CM7 | HM71 | 0.0° | 0.3° |
C5 | N7 | CM7 | HM72 | 125.2° | 119.7° |
C5 | N7 | CM7 | HM73 | 125.3° | 120.3° |
CM7 | N7 | C5 | C6 | 0.8° | 0.4° |
CM7 | N7 | C5 | C4 | 179.8° | 179.9° |
N7 | CM7 | HM71 | HM72 | 125.2° | 120.0° |
N7 | CM7 | HM71 | HM73 | 125.3° | 120.0° |
N7 | CM7 | HM72 | HM73 | 114.2° | 120.0° |
C5 | C6 | O6 | N1 | 179.9° | 179.9° |
C5 | C6 | N1 | C2 | 0.9° | 0.0° |
C5 | C6 | N1 | HN1 | 179.1° | 180.0° |
C6 | C5 | C4 | N3 | 0.7° | 0.2° |
C4 | C5 | C6 | O6 | 178.8° | 179.9° |
C4 | C5 | C6 | N1 | 1.3° | 0.0° |
C5 | C4 | N3 | C2 | 0.5° | 0.5° |
O6 | C6 | N1 | C2 | 179.2° | 180.0° |
O6 | C6 | N1 | HN1 | 0.8° | 0.0° |
C6 | N1 | C2 | HN1 | 180.0° | 180.0° |
C6 | N1 | C2 | N2 | 179.3° | 180.0° |
C6 | N1 | C2 | N3 | 0.4° | 0.3° |
N1 | C2 | N2 | N3 | 179.7° | 179.7° |
N1 | C2 | N2 | HN21 | 179.9° | 180.0° |
N1 | C2 | N2 | HN22 | 54.7° | 0.0° |
N1 | C2 | N3 | C4 | 1.1° | 0.5° |
HN1 | N1 | C2 | N2 | 0.7° | 0.0° |
HN1 | N1 | C2 | N3 | 179.6° | 179.7° |
C2 | N2 | HN21 | HN22 | 125.4° | 180.0° |
N2 | C2 | N3 | C4 | 178.6° | 179.8° |
N3 | C2 | N2 | HN21 | 0.2° | 0.2° |
N3 | C2 | N2 | HN22 | 125.6° | 179.7° |
HM71 | CM7 | HM72 | HM73 | 114.3° | 120.0° |