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7MD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CACsing1.51Å1.51Å
OCdoub1.21Å1.22Å
CN8sing1.35Å1.34Å
NCAsing1.47Å1.45Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
O31Psing1.61Å1.61Å
N8Psing1.64Å1.67Å
PO5'sing1.61Å1.61Å
PO1Pdoub1.48Å1.59Å
C6N1doub1.33Å1.36ÅAromatic
N1C2sing1.32Å1.34ÅAromatic
C2N3doub1.32Å1.34ÅAromatic
C2H21sing1.08Å1.08Å
C4N3sing1.33Å1.36ÅAromatic
C5C4doub1.41Å1.39ÅAromatic
N9C4sing1.37Å1.34ÅAromatic
N7C5sing1.35Å1.35ÅAromatic
C6C5sing1.41Å1.39ÅAromatic
N6C6sing1.38Å1.36Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
N7C8doub1.30Å1.35ÅAromatic
C8N9sing1.36Å1.34ÅAromatic
C8H8sing1.08Å1.08Å
N8HN8sing0.97Å1.00Å
N9C1'sing1.47Å1.48Å
CBCAsing1.53Å1.53Å
CAHAsing1.09Å1.10Å
CGCBsing1.51Å1.52Å
CBHBsing1.09Å1.10Å
CBHBAsing1.09Å1.10Å
OD2CGdoub1.21Å1.25Å
CGOD1sing1.34Å1.25Å
C2'C1'sing1.54Å1.52Å
C1'O4'sing1.44Å1.43Å
C1'H1'sing1.09Å1.10Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.54Å1.52Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3'C4'sing1.55Å1.52Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C32O31sing1.43Å1.43Å
C33C32sing1.53Å1.52Å
C32H32sing1.09Å1.10Å
C32H32Asing1.09Å1.10Å
C34C33sing1.53Å1.52Å
C33H33sing1.09Å1.10Å
C33H33Asing1.09Å1.10Å
N35C34sing1.47Å1.45Å
C34H34sing1.09Å1.10Å
C34H34Asing1.09Å1.10Å
N35HN35sing1.01Å1.00Å
N35HN3Asing1.01Å1.00Å
C5'C4'sing1.53Å1.52Å
O4'C4'sing1.44Å1.43Å
C4'H4'sing1.09Å1.10Å
O5'C5'sing1.43Å1.43Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
OD1HOD1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CACO121.4°120.0°
CACN8114.8°120.0°
CCAN109.4°109.5°
CCACB111.9°109.5°
CCAHA108.0°109.5°
OCN8123.8°120.0°
CN8P125.0°120.0°
CN8HN8117.5°120.0°
CANH109.5°111.0°
CANH2109.5°111.0°
NCACB109.7°109.4°
NCAHA110.3°109.5°
HNH2109.5°111.0°
O31PN8111.4°109.5°
O31PO5'103.3°109.4°
O31PO1P109.8°109.5°
PO31C32121.5°123.0°
N8PO5'107.7°109.5°
N8PO1P113.7°109.5°
PN8HN8117.5°120.0°
O5'PO1P110.4°109.5°
PO5'C5'121.6°123.0°
C6N1C2120.9°121.2°
N1C6C5119.3°118.5°
N1C6N6120.3°120.8°
N1C2N3120.9°122.5°
N1C2H21119.6°118.7°
N3C2H21119.5°118.8°
C2N3C4120.3°120.7°
N3C4C5119.8°119.1°
N3C4N9132.8°134.9°
C5C4N9107.4°106.0°
C4C5N7107.4°107.2°
C4C5C6118.7°118.1°
C4N9C8108.5°107.4°
C4N9C1'124.6°126.3°
N7C5C6133.9°134.7°
C5N7C8107.6°109.4°
C5C6N6120.4°120.7°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
HN6N6HN6A109.4°120.0°
N7C8N9108.9°110.0°
N7C8H8125.5°124.9°
N9C8H8125.5°125.0°
C8N9C1'126.9°126.3°
N9C1'C2'112.0°110.4°
N9C1'O4'112.2°110.4°
N9C1'H1'104.5°110.3°
CBCAHA107.6°109.5°
CACBCG113.6°109.5°
CACBHB108.1°109.5°
CACBHBA108.1°109.4°
CGCBHB108.1°109.5°
CGCBHBA108.1°109.5°
CBCGOD2117.6°120.0°
CBCGOD1120.4°120.0°
HBCBHBA110.8°109.4°
OD2CGOD1122.0°119.9°
CGOD1HOD1109.5°117.1°
C2'C1'O4'104.9°104.9°
C2'C1'H1'111.8°110.4°
C1'C2'O2'110.7°110.5°
C1'C2'C3'103.2°104.0°
C1'C2'H2'113.7°110.5°
O4'C1'H1'111.7°110.4°
C1'O4'C4'108.0°105.3°
O2'C2'C3'112.3°110.6°
O2'C2'H2'104.9°110.5°
C2'O2'HO2'109.5°114.0°
C3'C2'H2'112.2°110.5°
C2'C3'C4'105.3°104.1°
C2'C3'O3'110.9°110.5°
C2'C3'H3'110.9°110.6°
C4'C3'O3'108.4°110.4°
C4'C3'H3'113.3°110.5°
C3'C4'C5'112.9°110.4°
C3'C4'O4'106.6°104.8°
C3'C4'H4'109.8°110.4°
O3'C3'H3'108.0°110.6°
C3'O3'HO3'109.5°113.9°
O31C32C33109.3°109.5°
O31C32H32109.5°109.5°
O31C32H32A109.5°109.5°
C33C32H32109.5°109.5°
C33C32H32A109.5°109.4°
C32C33C34110.7°109.5°
C32C33H33109.0°109.5°
C32C33H33A109.1°109.4°
H32C32H32A109.4°109.5°
C34C33H33109.1°109.5°
C34C33H33A109.0°109.5°
C33C34N35109.6°109.5°
C33C34H34109.4°109.5°
C33C34H34A109.4°109.5°
H33C33H33A109.9°109.4°
N35C34H34109.4°109.5°
N35C34H34A109.4°109.4°
C34N35HN35109.5°111.0°
C34N35HN3A109.5°111.0°
H34C34H34A109.5°109.5°
HN35N35HN3A109.5°111.0°
C5'C4'O4'111.1°110.4°
C5'C4'H4'105.1°110.4°
C4'C5'O5'110.0°109.5°
C4'C5'H5'109.3°109.4°
C4'C5'H5'A109.3°109.5°
O4'C4'H4'111.5°110.3°
O5'C5'H5'109.3°109.5°
O5'C5'H5'A109.3°109.5°
H5'C5'H5'A109.6°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CACON8178.9°179.7°
CCANCB123.1°120.0°
CCANHA118.6°120.0°
CCANH180.0°64.0°
CCANH260.0°60.0°
CACN8P179.8°179.7°
CACN8HN80.2°0.3°
CCACBHA118.5°120.0°
CCACBCG177.8°175.0°
CCACBHB57.8°65.0°
CCACBHBA62.2°55.0°
OCCAN133.9°19.7°
OCN8P1.2°0.0°
OCN8HN8178.8°180.0°
OCCACB12.2°100.3°
OCCAHA106.0°139.7°
N8CCAN47.0°160.0°
CN8PO3169.7°60.0°
CN8PHN8180.0°180.0°
CN8PO5'177.7°60.0°
CN8PO1P55.0°180.0°
N8CCACB168.8°80.0°
N8CCAHA73.0°40.0°
CANHH2120.0°124.0°
NCACBHA120.0°120.0°
NCACBCG56.2°65.0°
NCACBHB63.8°55.0°
NCACBHBA176.2°174.9°
HNCACB56.9°176.0°
HNCAHA61.4°56.0°
H2NCACB177.0°60.0°
H2NCAHA58.6°180.0°
O31PN8O5'112.6°120.0°
O31PN8O1P124.7°120.0°
O31PO5'O1P117.3°120.0°
O31PN8HN8110.3°120.0°
PO31C32C33160.1°180.0°
PO31C32H3279.9°60.0°
PO31C32H32A40.1°60.1°
O31PO5'C5'125.4°165.0°
N8PO5'O1P124.7°120.0°
N8PO31C3250.2°70.0°
N8PO5'C5'116.7°75.0°
O5'PN8HN82.3°120.0°
O5'PO31C3265.2°170.0°
PO5'C5'C4'177.6°180.0°
PO5'C5'H5'62.4°60.0°
PO5'C5'H5'A57.6°59.9°
O1PPN8HN8125.0°0.0°
O1PPO31C32177.0°50.0°
O1PPO5'C5'8.0°45.0°
C6N1C2N30.1°0.1°
C6N1C2H21179.9°180.0°
N1C6C5C40.0°0.0°
N1C6C5N7179.9°180.0°
N1C6C5N6180.0°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
N1C2N3H21180.0°179.9°
N1C2N3C40.2°0.1°
C2N1C6C50.1°0.0°
C2N1C6N6180.0°180.0°
C2N3C4C50.1°0.1°
C2N3C4N9179.8°180.0°
H21C2N3C4179.8°180.0°
N3C4C5N9179.9°180.0°
N3C4C5N7180.0°180.0°
N3C4C5C60.0°0.0°
N3C4N9C8179.9°180.0°
N3C4N9C1'0.1°0.0°
C4C5N7C6179.9°180.0°
C4C5C6N6180.0°180.0°
C4C5N7C80.1°0.0°
C5C4N9C80.0°0.0°
C5C4N9C1'180.0°180.0°
N9C4C5N70.1°0.0°
N9C4C5C6179.9°180.0°
C4N9C8N70.0°0.0°
C4N9C8C1'180.0°180.0°
C4N9C8H8180.0°180.0°
C4N9C1'C2'88.9°88.1°
C4N9C1'O4'153.5°156.4°
C4N9C1'H1'32.3°34.2°
N7C5C6N60.1°0.0°
C5N7C8N90.0°0.0°
C5N7C8H8179.9°180.0°
C5C6N6HN6179.9°180.0°
C5C6N6HN6A59.9°0.0°
C6C5N7C8179.9°180.0°
C6N6HN6HN6A120.0°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1'180.0°180.0°
C8N9C1'C2'91.2°91.9°
C8N9C1'O4'26.5°23.6°
C8N9C1'H1'147.6°145.8°
H8C8N9C1'0.1°0.0°
N9C1'C2'O4'121.9°118.9°
N9C1'C2'H1'116.9°122.2°
N9C1'O4'H1'116.9°122.2°
N9C1'C2'O2'85.6°98.5°
N9C1'C2'C3'154.1°142.8°
N9C1'C2'H2'32.3°24.1°
N9C1'O4'C4'157.0°159.3°
CACBCGHB120.0°120.0°
CACBCGHBA120.0°120.0°
CACBHBHBA118.3°119.9°
CACBCGOD2176.0°0.0°
CACBCGOD14.1°180.0°
HACACBCG63.8°55.0°
HACACBHB176.2°175.0°
HACACBHBA56.2°65.0°
CGCBHBHBA118.3°120.0°
CBCGOD2OD1179.9°180.0°
CBCGOD1HOD1179.9°180.0°
HBCBCGOD264.0°120.0°
HBCBCGOD1115.9°60.0°
HBACBCGOD256.0°120.0°
HBACBCGOD1124.2°60.0°
OD2CGOD1HOD10.0°0.0°
C2'C1'O4'H1'121.3°118.9°
C1'C2'O2'C3'114.8°114.7°
C1'C2'O2'H2'123.1°122.6°
C1'C2'C3'H2'122.8°118.6°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'C4'17.9°0.1°
C1'C2'C3'O3'99.1°118.7°
C1'C2'C3'H3'140.9°118.6°
C2'C1'O4'C4'35.1°40.5°
O4'C1'C2'O2'152.5°142.6°
O4'C1'C2'C3'32.2°23.9°
O4'C1'C2'H2'89.6°94.7°
C1'O4'C4'C3'23.3°40.5°
C1'O4'C4'C5'146.7°159.4°
C1'O4'C4'H4'96.4°78.3°
H1'C1'C2'O2'31.3°23.7°
H1'C1'C2'C3'89.0°95.0°
H1'C1'C2'H2'149.2°146.4°
H1'C1'O4'C4'86.1°78.4°
O2'C2'C3'H2'117.9°122.7°
O2'C2'C3'C4'137.2°118.6°
O2'C2'C3'O3'20.2°0.0°
O2'C2'C3'H3'99.8°122.7°
C3'C2'O2'HO2'65.2°65.3°
C2'C3'C4'O3'118.7°118.6°
C2'C3'C4'H3'121.4°118.7°
C2'C3'O3'H3'121.7°122.7°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'C5'124.5°142.9°
C2'C3'C4'O4'2.2°24.0°
C2'C3'C4'H4'118.7°94.7°
H2'C2'O2'HO2'56.9°57.4°
H2'C2'C3'C4'104.9°118.7°
H2'C2'C3'O3'138.0°122.7°
H2'C2'C3'H3'18.0°0.0°
C4'C3'O3'H3'123.1°122.6°
C4'C3'O3'HO3'64.9°176.1°
C3'C4'C5'O4'119.7°115.4°
C3'C4'C5'H4'119.6°122.3°
C3'C4'O4'H4'119.8°118.8°
C3'C4'C5'O5'53.3°175.0°
C3'C4'C5'H5'173.3°55.0°
C3'C4'C5'H5'A66.7°64.9°
O3'C3'C4'C5'116.8°98.4°
O3'C3'C4'O4'120.9°142.6°
O3'C3'C4'H4'0.0°23.9°
H3'C3'O3'HO3'58.3°61.3°
H3'C3'C4'C5'3.1°24.2°
H3'C3'C4'O4'119.2°94.7°
H3'C3'C4'H4'119.9°146.5°
O31C32C33H32120.0°120.1°
O31C32C33H32A120.0°120.0°
O31C32H32H32A120.0°120.0°
O31C32C33C34136.6°180.0°
O31C32C33H3316.6°59.9°
O31C32C33H33A103.4°60.0°
C33C32H32H32A120.1°119.9°
C32C33C34H33120.0°120.1°
C32C33C34H33A120.0°119.9°
C32C33H33H33A119.5°119.9°
C32C33C34N35117.9°180.0°
C32C33C34H342.1°59.9°
C32C33C34H34A122.1°60.1°
H32C32C33C34103.4°59.9°
H32C32C33H33136.6°180.0°
H32C32C33H33A16.6°60.1°
H32AC32C33C3416.6°60.0°
H32AC32C33H33103.4°60.1°
H32AC32C33H33A136.6°180.0°
C34C33H33H33A119.5°120.1°
C33C34N35H34120.0°120.0°
C33C34N35H34A120.0°120.0°
C33C34H34H34A120.0°120.0°
C33C34N35HN35180.0°56.0°
C33C34N35HN3A60.0°180.0°
H33C33C34N35122.1°60.0°
H33C33C34H34117.9°180.0°
H33C33C34H34A2.1°60.0°
H33AC33C34N352.1°60.0°
H33AC33C34H34122.1°60.0°
H33AC33C34H34A117.9°180.0°
N35C34H34H34A119.9°120.0°
C34N35HN35HN3A120.0°124.0°
H34C34N35HN3560.0°64.0°
H34C34N35HN3A180.0°60.0°
H34AC34N35HN3560.0°176.0°
H34AC34N35HN3A60.0°60.0°
C5'C4'O4'H4'116.9°122.3°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.1°
C4'C5'H5'H5'A119.8°120.0°
O4'C4'C5'O5'66.4°69.6°
O4'C4'C5'H5'53.6°170.4°
O4'C4'C5'H5'A173.6°50.5°
H4'C4'C5'O5'172.9°52.7°
H4'C4'C5'H5'67.1°67.3°
H4'C4'C5'H5'A52.9°172.8°
O5'C5'H5'H5'A119.8°120.0°

223532

PDB entries from 2024-08-07

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