7K8
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4 | N4 | sing | 1.42Å | 1.40Å | |
| N4 | C4 | doub | 1.29Å | 1.28Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C5 | C4 | sing | 1.52Å | 1.53Å | |
| C5 | C6 | sing | 1.53Å | 1.54Å | |
| C4 | N3 | sing | 1.39Å | 1.34Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.55Å | 1.52Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| N3 | C2 | sing | 1.35Å | 1.34Å | |
| O3' | C3' | sing | 1.43Å | 1.45Å | |
| N1 | C2 | sing | 1.34Å | 1.35Å | |
| N1 | C6 | sing | 1.46Å | 1.48Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.50Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| P | OP2 | doub | 1.48Å | 1.53Å | |
| P | OP1 | sing | 1.61Å | 1.52Å | |
| P | OP3 | sing | 1.61Å | 1.52Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O4 | H4 | sing | 0.97Å | 0.95Å | |
| C5 | H52 | sing | 1.09Å | 1.10Å | |
| C5 | H51 | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C6 | H1 | sing | 1.09Å | 1.10Å | |
| C1' | H11 | sing | 1.09Å | 1.10Å | |
| C2' | H22 | sing | 1.09Å | 1.10Å | |
| C2' | H21 | sing | 1.09Å | 1.10Å | |
| C3' | H31 | sing | 1.09Å | 1.10Å | |
| O3' | H32 | sing | 0.97Å | 0.95Å | |
| C4' | H41 | sing | 1.09Å | 1.10Å | |
| C5' | H53 | sing | 1.09Å | 1.10Å | |
| C5' | H54 | sing | 1.09Å | 1.10Å | |
| OP1 | H2 | sing | 0.97Å | 0.95Å | |
| OP3 | H5 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4 | N4 | C4 | 120.8° | 120.0° |
| N4 | O4 | H4 | 109.5° | 114.0° |
| N4 | C4 | C5 | 119.7° | 121.4° |
| N4 | C4 | N3 | 120.3° | 121.4° |
| C4' | O4' | C1' | 111.0° | 106.9° |
| O4' | C4' | C5' | 108.2° | 110.6° |
| O4' | C4' | C3' | 104.3° | 103.5° |
| O4' | C4' | H41 | 111.1° | 110.6° |
| O4' | C1' | N1 | 112.9° | 109.9° |
| O4' | C1' | C2' | 105.3° | 107.3° |
| O4' | C1' | H11 | 110.0° | 110.0° |
| C4 | C5 | C6 | 113.5° | 107.5° |
| C5 | C4 | N3 | 119.9° | 117.2° |
| C4 | C5 | H52 | 108.5° | 109.8° |
| C4 | C5 | H51 | 108.4° | 109.9° |
| C5 | C6 | N1 | 103.3° | 109.5° |
| C6 | C5 | H52 | 108.4° | 109.8° |
| C6 | C5 | H51 | 108.5° | 109.8° |
| C5 | C6 | H6 | 111.0° | 109.4° |
| C5 | C6 | H1 | 111.0° | 109.5° |
| C4 | N3 | C2 | 121.6° | 119.3° |
| C4 | N3 | H3 | 119.2° | 120.4° |
| C5' | C4' | C3' | 113.5° | 110.6° |
| C4' | C5' | O5' | 109.5° | 109.5° |
| C5' | C4' | H41 | 109.8° | 110.6° |
| C4' | C5' | H53 | 109.5° | 109.4° |
| C4' | C5' | H54 | 109.5° | 109.4° |
| C4' | C3' | O3' | 108.7° | 110.9° |
| C4' | C3' | C2' | 103.4° | 102.1° |
| C4' | C3' | H31 | 110.3° | 111.0° |
| C3' | C4' | H41 | 109.8° | 110.8° |
| N1 | C1' | C2' | 110.1° | 109.9° |
| C1' | N1 | C2 | 119.1° | 118.8° |
| C1' | N1 | C6 | 116.0° | 118.8° |
| N1 | C1' | H11 | 109.6° | 109.9° |
| C1' | C2' | C3' | 101.1° | 104.2° |
| C2' | C1' | H11 | 108.7° | 109.9° |
| C1' | C2' | H22 | 111.5° | 110.5° |
| C1' | C2' | H21 | 111.5° | 110.5° |
| N3 | C2 | N1 | 117.9° | 122.4° |
| N3 | C2 | O2 | 120.0° | 118.8° |
| C2 | N3 | H3 | 119.2° | 120.3° |
| O3' | C3' | C2' | 111.9° | 110.9° |
| O3' | C3' | H31 | 111.5° | 110.8° |
| C3' | O3' | H32 | 109.5° | 114.0° |
| C2 | N1 | C6 | 124.8° | 122.4° |
| N1 | C2 | O2 | 122.0° | 118.8° |
| N1 | C6 | H6 | 111.0° | 109.6° |
| N1 | C6 | H1 | 111.0° | 109.3° |
| C5' | O5' | P | 121.0° | 123.0° |
| O5' | C5' | H53 | 109.5° | 109.5° |
| O5' | C5' | H54 | 109.4° | 109.5° |
| C3' | C2' | H22 | 111.5° | 110.5° |
| C3' | C2' | H21 | 111.5° | 110.6° |
| C2' | C3' | H31 | 110.6° | 110.9° |
| O5' | P | OP2 | 103.4° | 109.4° |
| O5' | P | OP1 | 108.4° | 109.5° |
| O5' | P | OP3 | 107.9° | 109.5° |
| OP2 | P | OP1 | 111.8° | 109.5° |
| OP2 | P | OP3 | 112.0° | 109.5° |
| OP1 | P | OP3 | 112.8° | 109.5° |
| P | OP1 | H2 | 109.5° | 113.9° |
| P | OP3 | H5 | 109.5° | 114.0° |
| H52 | C5 | H51 | 109.5° | 109.9° |
| H6 | C6 | H1 | 109.5° | 109.5° |
| H22 | C2' | H21 | 109.5° | 110.4° |
| H53 | C5' | H54 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4 | N4 | C4 | C5 | 1.3° | 0.0° |
| O4 | N4 | C4 | N3 | 177.8° | 180.0° |
| N4 | C4 | C5 | N3 | 176.5° | 180.0° |
| N4 | C4 | C5 | C6 | 163.2° | 131.5° |
| N4 | C4 | N3 | C2 | 166.4° | 156.9° |
| N4 | C4 | N3 | H3 | 13.6° | 23.3° |
| C4 | N4 | O4 | H4 | 180.0° | 180.0° |
| N4 | C4 | C5 | H52 | 42.6° | 109.0° |
| N4 | C4 | C5 | H51 | 76.2° | 12.0° |
| O4' | C4' | C5' | C3' | 115.3° | 114.0° |
| O4' | C4' | C5' | H41 | 121.5° | 122.9° |
| O4' | C4' | C3' | H41 | 119.2° | 118.6° |
| C4' | O4' | C1' | N1 | 131.6° | 145.9° |
| C4' | O4' | C1' | C2' | 11.4° | 26.5° |
| O4' | C4' | C3' | O3' | 86.8° | 155.2° |
| O4' | C4' | C5' | O5' | 167.5° | 66.5° |
| O4' | C4' | C3' | C2' | 32.2° | 37.1° |
| C4' | O4' | C1' | H11 | 105.6° | 93.0° |
| O4' | C4' | C3' | H31 | 150.6° | 81.1° |
| O4' | C4' | C5' | H53 | 72.5° | 173.5° |
| O4' | C4' | C5' | H54 | 47.5° | 53.6° |
| C1' | O4' | C4' | C5' | 108.4° | 158.6° |
| C1' | O4' | C4' | C3' | 12.8° | 40.1° |
| O4' | C1' | N1 | C2' | 117.4° | 117.8° |
| O4' | C1' | N1 | H11 | 123.0° | 121.2° |
| O4' | C1' | C2' | H11 | 117.9° | 119.6° |
| O4' | C1' | N1 | C2 | 149.8° | 52.8° |
| O4' | C1' | N1 | C6 | 31.9° | 126.9° |
| O4' | C1' | C2' | C3' | 30.8° | 2.0° |
| O4' | C1' | C2' | H22 | 149.4° | 120.7° |
| O4' | C1' | C2' | H21 | 87.9° | 116.7° |
| C1' | O4' | C4' | H41 | 131.0° | 78.6° |
| C4 | C5 | C6 | H52 | 120.6° | 119.5° |
| C4 | C5 | C6 | H51 | 120.6° | 119.5° |
| C5 | C4 | N3 | C2 | 10.0° | 23.1° |
| C4 | C5 | C6 | N1 | 42.6° | 49.2° |
| C5 | C4 | N3 | H3 | 170.0° | 156.8° |
| C4 | C5 | H52 | H51 | 118.2° | 121.0° |
| C4 | C5 | C6 | H6 | 76.4° | 169.3° |
| C4 | C5 | C6 | H1 | 161.5° | 70.6° |
| C6 | C5 | C4 | N3 | 20.3° | 48.5° |
| C5 | C6 | N1 | C1' | 134.7° | 149.3° |
| C5 | C6 | N1 | C2 | 47.1° | 30.4° |
| C5 | C6 | N1 | H6 | 119.0° | 120.0° |
| C5 | C6 | N1 | H1 | 119.0° | 120.0° |
| C6 | C5 | H52 | H51 | 118.2° | 121.0° |
| C5 | C6 | H6 | H1 | 122.9° | 120.1° |
| C4 | N3 | C2 | H3 | 180.0° | 179.9° |
| C4 | N3 | C2 | N1 | 11.4° | 1.8° |
| C4 | N3 | C2 | O2 | 166.2° | 178.6° |
| N3 | C4 | C5 | H52 | 140.9° | 71.0° |
| N3 | C4 | C5 | H51 | 100.3° | 168.0° |
| C5' | C4' | C3' | H41 | 123.3° | 122.9° |
| C5' | C4' | C3' | O3' | 155.6° | 86.3° |
| C4' | C5' | O5' | H53 | 120.0° | 119.9° |
| C4' | C5' | O5' | H54 | 120.0° | 120.0° |
| C5' | C4' | C3' | C2' | 85.3° | 155.5° |
| C4' | C5' | O5' | P | 137.3° | 180.0° |
| C5' | C4' | C3' | H31 | 33.0° | 37.3° |
| C4' | C5' | H53 | H54 | 120.0° | 120.0° |
| C4' | C3' | C2' | C1' | 38.0° | 20.9° |
| C4' | C3' | O3' | C2' | 113.7° | 112.7° |
| C4' | C3' | O3' | H31 | 121.9° | 123.7° |
| C3' | C4' | C5' | O5' | 77.2° | 179.5° |
| C4' | C3' | C2' | H31 | 118.1° | 118.2° |
| C4' | C3' | C2' | H22 | 156.6° | 97.8° |
| C4' | C3' | C2' | H21 | 80.6° | 139.6° |
| C4' | C3' | O3' | H32 | 180.0° | 174.2° |
| C3' | C4' | C5' | H53 | 42.8° | 59.5° |
| C3' | C4' | C5' | H54 | 162.8° | 60.5° |
| N1 | C1' | C2' | H11 | 120.1° | 121.0° |
| C1' | N1 | C2 | N3 | 160.5° | 176.6° |
| C1' | N1 | C2 | C6 | 178.2° | 179.7° |
| C1' | N1 | C2 | O2 | 17.0° | 3.8° |
| N1 | C1' | C2' | C3' | 152.8° | 121.4° |
| C1' | N1 | C6 | H6 | 106.3° | 29.3° |
| C1' | N1 | C6 | H1 | 15.7° | 90.7° |
| N1 | C1' | C2' | H22 | 88.6° | 119.9° |
| N1 | C1' | C2' | H21 | 34.1° | 2.7° |
| C1' | C2' | C3' | O3' | 78.9° | 139.1° |
| C2' | C1' | N1 | C2 | 92.8° | 65.0° |
| C2' | C1' | N1 | C6 | 85.5° | 115.3° |
| C1' | C2' | C3' | H22 | 118.6° | 118.7° |
| C1' | C2' | C3' | H21 | 118.6° | 118.7° |
| C1' | C2' | H22 | H21 | 123.9° | 122.6° |
| C1' | C2' | C3' | H31 | 156.1° | 97.3° |
| N3 | C2 | N1 | O2 | 177.5° | 179.6° |
| N3 | C2 | N1 | C6 | 21.3° | 3.1° |
| O3' | C3' | C2' | H31 | 125.0° | 123.6° |
| O3' | C3' | C2' | H22 | 39.7° | 20.4° |
| O3' | C3' | C2' | H21 | 162.5° | 102.2° |
| O3' | C3' | C4' | H41 | 32.3° | 36.6° |
| N1 | C2 | N3 | H3 | 168.6° | 178.3° |
| C2 | N1 | C6 | H6 | 71.9° | 150.4° |
| C2 | N1 | C6 | H1 | 166.1° | 89.6° |
| C2 | N1 | C1' | H11 | 26.8° | 174.0° |
| C6 | N1 | C2 | O2 | 161.2° | 176.5° |
| N1 | C6 | C5 | H52 | 163.1° | 70.3° |
| N1 | C6 | C5 | H51 | 78.0° | 168.7° |
| N1 | C6 | H6 | H1 | 122.9° | 119.9° |
| C6 | N1 | C1' | H11 | 154.9° | 5.7° |
| O2 | C2 | N3 | H3 | 13.8° | 1.3° |
| C5' | O5' | P | OP2 | 176.7° | 55.1° |
| C5' | O5' | P | OP1 | 64.5° | 175.0° |
| C5' | O5' | P | OP3 | 58.0° | 64.9° |
| O5' | C5' | C4' | H41 | 46.1° | 56.4° |
| O5' | C5' | H53 | H54 | 120.0° | 120.1° |
| C3' | C2' | C1' | H11 | 87.1° | 117.6° |
| C3' | C2' | H22 | H21 | 123.9° | 122.7° |
| C2' | C3' | O3' | H32 | 66.4° | 61.5° |
| C2' | C3' | C4' | H41 | 151.4° | 81.5° |
| O5' | P | OP2 | OP1 | 116.5° | 120.0° |
| O5' | P | OP2 | OP3 | 115.9° | 120.0° |
| O5' | P | OP1 | OP3 | 119.4° | 120.0° |
| P | O5' | C5' | H53 | 17.3° | 60.1° |
| P | O5' | C5' | H54 | 102.7° | 60.0° |
| O5' | P | OP1 | H2 | 113.4° | 180.0° |
| O5' | P | OP3 | H5 | 113.1° | 60.1° |
| OP2 | P | OP1 | OP3 | 127.2° | 120.0° |
| OP2 | P | OP1 | H2 | 0.0° | 60.1° |
| OP2 | P | OP3 | H5 | 0.0° | 180.0° |
| OP1 | P | OP3 | H5 | 127.2° | 60.0° |
| OP3 | P | OP1 | H2 | 127.2° | 60.0° |
| H52 | C5 | C6 | H6 | 44.2° | 49.9° |
| H52 | C5 | C6 | H1 | 77.9° | 169.9° |
| H51 | C5 | C6 | H6 | 163.0° | 71.1° |
| H51 | C5 | C6 | H1 | 41.0° | 48.9° |
| H11 | C1' | C2' | H22 | 31.5° | 1.1° |
| H11 | C1' | C2' | H21 | 154.2° | 123.6° |
| H22 | C2' | C3' | H31 | 85.2° | 144.0° |
| H21 | C2' | C3' | H31 | 37.5° | 21.4° |
| H31 | C3' | O3' | H32 | 58.1° | 62.1° |
| H31 | C3' | C4' | H41 | 90.3° | 160.3° |
| H41 | C4' | C5' | H53 | 166.0° | 63.6° |
| H41 | C4' | C5' | H54 | 73.9° | 176.4° |
