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SummaryGeometryRelated PDB entries

7GU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
POP1doub1.50Å1.47Å
POP2sing1.62Å1.49Å
PO5'sing1.62Å1.59Å
POP3sing1.62Å157.62Å
OP2HOP2sing0.98Å0.95Å
O5'C5'sing1.42Å1.43Å
N9C4sing1.37Å1.36ÅAromatic
N9C8sing1.37Å1.37ÅAromatic
N9C1'sing1.46Å1.45Å
C4N3sing1.35Å1.37Å
C4C5doub1.38Å1.39ÅAromatic
N3C2doub1.31Å1.33Å
C2N2sing1.37Å1.34Å
C2N1sing1.41Å1.39Å
N2HN21sing0.99Å1.02Å
N2HN22sing0.99Å1.02Å
N1C6sing1.40Å1.42Å
N1HN1sing1.02Å1.02Å
C6O6doub1.23Å1.24Å
C6C5sing1.44Å1.44Å
C5C7sing1.41Å1.39ÅAromatic
C7C8doub1.38Å1.31ÅAromatic
C7H7sing1.08Å1.10Å
C8H8sing1.08Å1.10Å
C2'C1'sing1.52Å1.52Å
C2'C3'sing1.51Å1.52Å
C2'H2'sing1.09Å1.12Å
C2'H2''sing1.10Å1.11Å
C5'C4'sing1.52Å1.51Å
C5'H5'sing1.09Å1.12Å
C5'H5''sing1.09Å1.11Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.52Å1.53Å
C4'H4'sing1.10Å1.11Å
O4'C1'sing1.44Å1.42Å
C1'H1'sing1.09Å1.12Å
C3'O3'sing1.41Å1.42Å
C3'H3'sing1.10Å1.11Å
O3'HO3'sing0.97Å0.95Å
OP3HOP3sing0.98Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OP1POP2119.9°115.3°
OP1PO5'107.3°115.0°
OP1POP366.9°115.0°
OP2PO5'109.8°103.7°
OP2POP3116.7°103.3°
POP2HOP2119.8°118.9°
O5'POP343.9°102.9°
PO5'C5'120.8°118.5°
POP3HOP366.9°118.9°
O5'C5'C4'110.9°108.7°
O5'C5'H5'111.7°109.2°
O5'C5'H5''111.7°109.2°
C4N9C8107.4°109.3°
C4N9C1'125.3°126.1°
N9C4N3125.5°123.6°
N9C4C5105.1°107.7°
C8N9C1'127.3°124.7°
N9C8C7112.7°108.3°
N9C8H8125.9°120.8°
N9C1'C2'125.3°113.8°
N9C1'O4'111.8°109.4°
N9C1'H1'94.9°105.1°
N3C4C5129.4°128.7°
C4N3C2112.7°113.6°
C4C5C6117.7°118.6°
C4C5C7110.7°108.0°
N3C2N2120.1°122.1°
N3C2N1122.9°122.6°
N2C2N1117.0°115.3°
C2N2HN21120.0°118.3°
C2N2HN22108.4°118.3°
C2N1C6125.1°125.1°
C2N1HN1116.7°117.5°
HN21N2HN22108.5°123.5°
C6N1HN1118.2°117.4°
N1C6O6119.6°124.9°
N1C6C5112.2°111.4°
O6C6C5128.2°123.7°
C6C5C7131.6°133.4°
C5C7C8104.1°106.8°
C5C7H7130.3°127.6°
C8C7H7125.5°125.6°
C7C8H8121.4°130.9°
C1'C2'C3'99.4°103.2°
C1'C2'H2'116.0°114.1°
C1'C2'H2''116.0°110.0°
C2'C1'O4'111.7°107.7°
C2'C1'H1'95.0°111.7°
C3'C2'H2'116.1°112.8°
C3'C2'H2''116.1°109.9°
C2'C3'C4'102.3°101.8°
C2'C3'O3'117.5°111.3°
C2'C3'H3'110.5°110.2°
H2'C2'H2''94.4°106.8°
C4'C5'H5'111.6°110.1°
C4'C5'H5''111.6°110.1°
C5'C4'O4'116.1°109.7°
C5'C4'C3'127.4°113.6°
C5'C4'H4'85.3°108.6°
H5'C5'H5''98.7°109.6°
O4'C4'C3'106.9°105.5°
O4'C4'H4'118.1°108.2°
C4'O4'C1'105.9°108.1°
C3'C4'H4'100.4°111.1°
C4'C3'O3'113.1°112.4°
C4'C3'H3'115.1°111.5°
O4'C1'H1'115.4°109.1°
O3'C3'H3'99.0°109.4°
C3'O3'HO3'117.5°106.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OP1POP2O5'125.0°126.6°
OP1POP2OP377.4°126.3°
OP1PO5'OP323.5°125.8°
OP1POP2HOP2179.9°48.8°
OP1PO5'C5'74.7°180.0°
OP1POP3HOP3180.0°48.1°
OP2PO5'OP3108.4°107.4°
OP2PO5'C5'153.5°53.2°
OP2POP3HOP367.0°78.4°
O5'POP2HOP255.0°175.4°
PO5'C5'C4'137.4°180.0°
PO5'C5'H5'97.4°59.9°
PO5'C5'H5''12.2°59.9°
O5'POP3HOP324.4°173.9°
OP3POP2HOP2102.5°77.5°
OP3PO5'C5'98.2°54.2°
O5'C5'C4'H5'125.3°119.6°
O5'C5'C4'H5''125.3°119.5°
O5'C5'H5'H5''117.6°119.5°
O5'C5'C4'O4'168.4°61.8°
O5'C5'C4'C3'50.2°179.5°
O5'C5'C4'H4'49.2°56.3°
C4N9C8C1'178.8°180.0°
N9C4N3C5179.4°180.0°
N9C4N3C2179.6°180.0°
N9C4C5C6179.4°180.0°
N9C4C5C70.5°0.0°
C4N9C8C70.2°0.0°
C4N9C8H8179.8°180.0°
C4N9C1'C2'67.2°92.5°
C4N9C1'O4'73.2°147.1°
C4N9C1'H1'166.9°30.0°
C8N9C4N3180.0°180.0°
C8N9C4C50.4°0.0°
N9C8C7C50.1°0.0°
N9C8C7H8180.0°180.0°
N9C8C7H7179.9°180.0°
C8N9C1'C2'114.2°87.5°
C8N9C1'O4'105.4°32.9°
C8N9C1'H1'14.5°150.0°
C1'N9C4N31.1°0.0°
C1'N9C4C5178.4°180.0°
C1'N9C8C7178.6°180.0°
C1'N9C8H81.4°0.0°
N9C1'C2'O4'140.5°121.4°
N9C1'C2'H1'99.6°118.8°
N9C1'C2'C3'165.2°102.8°
N9C1'C2'H2'69.5°20.0°
N9C1'C2'H2''40.0°140.0°
N9C1'O4'C4'149.4°128.8°
N9C1'O4'H1'107.0°114.5°
C4N3C2N2179.8°180.0°
C4N3C2N10.4°0.0°
N3C4C5C60.2°0.0°
N3C4C5C7180.0°180.0°
C5C4N3C20.1°0.0°
C4C5C6N10.2°0.0°
C4C5C6O6179.5°180.0°
C4C5C6C7179.8°180.0°
C4C5C7C80.4°0.0°
C4C5C7H7179.7°180.0°
N3C2N2N1179.8°180.0°
N3C2N2HN21180.0°51.8°
N3C2N2HN2254.7°128.1°
N3C2N1C60.3°0.0°
N3C2N1HN1179.6°180.0°
C2N2HN21HN22125.2°179.9°
N2C2N1C6179.9°180.0°
N2C2N1HN10.2°0.1°
N1C2N2HN210.2°128.2°
N1C2N2HN22125.4°51.9°
C2N1C6HN1180.0°179.9°
C2N1C6O6179.8°179.9°
C2N1C6C50.0°0.0°
N1C6O6C5179.7°179.9°
N1C6C5C7180.0°180.0°
HN1N1C6O60.2°0.0°
HN1N1C6C5180.0°180.0°
O6C6C5C70.3°0.0°
C6C5C7C8179.4°180.0°
C6C5C7H70.5°0.0°
C5C7C8H7180.0°180.0°
C5C7C8H8179.9°180.0°
H7C7C8H80.1°0.0°
C1'C2'C3'H2'125.2°123.7°
C1'C2'C3'H2''125.2°117.3°
C1'C2'H2'H2''121.8°121.8°
C2'C1'O4'C4'3.4°4.6°
C1'C2'C3'C4'34.4°33.0°
C2'C1'O4'H1'107.0°121.4°
C1'C2'C3'O3'90.1°152.9°
C1'C2'C3'H3'157.4°85.5°
C3'C2'H2'H2''122.0°120.9°
C2'C3'C4'C5'108.7°157.2°
C2'C3'C4'O4'35.5°37.0°
C2'C3'C4'O3'127.3°119.2°
C2'C3'C4'H3'119.8°117.5°
C2'C3'C4'H4'159.3°80.0°
C3'C2'C1'O4'24.8°18.6°
C3'C2'C1'H1'95.1°138.4°
C2'C3'O3'H3'118.8°122.1°
C2'C3'O3'HO3'180.0°53.1°
H2'C2'C3'C4'159.6°156.6°
H2'C2'C1'O4'150.0°141.4°
H2'C2'C1'H1'30.1°98.8°
H2'C2'C3'O3'35.1°83.4°
H2'C2'C3'H3'77.4°38.2°
H2''C2'C3'C4'90.8°84.3°
H2''C2'C1'O4'100.5°98.6°
H2''C2'C1'H1'139.6°21.2°
H2''C2'C3'O3'144.7°35.7°
H2''C2'C3'H3'32.2°157.3°
C4'C5'H5'H5''117.5°121.2°
C5'C4'O4'C3'148.8°122.8°
C5'C4'O4'H4'99.1°118.3°
C5'C4'C3'H4'92.0°122.8°
C5'C4'O4'C1'128.8°148.9°
C5'C4'C3'O3'123.9°83.6°
C5'C4'C3'H3'11.1°39.7°
H5'C5'C4'O4'43.1°57.8°
H5'C5'C4'C3'175.5°60.0°
H5'C5'C4'H4'76.1°175.9°
H5''C5'C4'O4'66.4°178.7°
H5''C5'C4'C3'75.0°60.9°
H5''C5'C4'H4'174.5°63.3°
O4'C4'C3'H4'123.8°117.0°
C4'O4'C1'H1'103.6°116.8°
O4'C4'C3'O3'91.9°156.2°
O4'C4'C3'H3'155.3°80.5°
C3'C4'O4'C1'20.0°26.2°
C4'C3'O3'H3'122.3°124.5°
C4'C3'O3'HO3'61.1°60.3°
H4'C4'O4'C1'132.1°92.8°
H4'C4'C3'O3'32.0°39.2°
H4'C4'C3'H3'80.9°162.5°
H3'C3'O3'HO3'61.3°175.2°

226262

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