7DD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3B | PB | doub | 1.48Å | 1.48Å | |
| O2A | PA | doub | 1.48Å | 1.47Å | |
| O1A | PA | sing | 1.61Å | 1.50Å | |
| PA | O3A | sing | 1.61Å | 1.58Å | |
| PA | O5' | sing | 1.61Å | 1.58Å | |
| PB | O3A | sing | 1.61Å | 1.59Å | |
| PB | O1B | sing | 1.61Å | 1.50Å | |
| PB | O2B | sing | 1.61Å | 1.50Å | |
| N6 | C6 | sing | 1.38Å | 1.34Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C16 | C8 | doub | 1.34Å | 1.34Å | Aromatic |
| C16 | C5 | sing | 1.46Å | 1.34Å | Aromatic |
| C8 | N9 | sing | 1.37Å | 1.34Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.36Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.35Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.33Å | Aromatic |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| O4' | C4' | sing | 1.44Å | 1.44Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| N9 | C4 | sing | 1.37Å | 1.34Å | Aromatic |
| N9 | C1' | sing | 1.46Å | 1.47Å | |
| C4 | N3 | doub | 1.33Å | 1.35Å | Aromatic |
| N1 | C2 | doub | 1.32Å | 1.40Å | Aromatic |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C1' | C2' | sing | 1.54Å | 1.54Å | |
| N3 | C2 | sing | 1.32Å | 1.39Å | Aromatic |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| C2' | O2' | sing | 1.43Å | 1.45Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| O1B | H1 | sing | 0.97Å | 0.95Å | |
| O2B | H2 | sing | 0.97Å | 0.95Å | |
| O1A | H3 | sing | 0.97Å | 0.95Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C4' | H6 | sing | 1.09Å | 1.10Å | |
| C1' | H7 | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C16 | H9 | sing | 1.08Å | 1.08Å | |
| N6 | H10 | sing | 0.97Å | 1.00Å | |
| N6 | H11 | sing | 0.97Å | 1.00Å | |
| C2 | H12 | sing | 1.08Å | 1.08Å | |
| C2' | H13 | sing | 1.09Å | 1.10Å | |
| O2' | H14 | sing | 0.97Å | 0.95Å | |
| C3' | H15 | sing | 1.09Å | 1.10Å | |
| O3' | H16 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3B | PB | O3A | 111.6° | 109.5° |
| O3B | PB | O1B | 116.3° | 109.5° |
| O3B | PB | O2B | 111.1° | 109.5° |
| O2A | PA | O1A | 116.1° | 109.5° |
| O2A | PA | O3A | 112.0° | 109.4° |
| O2A | PA | O5' | 107.6° | 109.5° |
| O1A | PA | O3A | 104.9° | 109.5° |
| O1A | PA | O5' | 110.1° | 109.5° |
| PA | O1A | H3 | 109.5° | 114.0° |
| O3A | PA | O5' | 105.7° | 109.4° |
| PA | O3A | PB | 130.3° | 134.0° |
| PA | O5' | C5' | 118.8° | 123.0° |
| O3A | PB | O1B | 101.7° | 109.5° |
| O3A | PB | O2B | 104.6° | 109.5° |
| O1B | PB | O2B | 110.6° | 109.5° |
| PB | O1B | H1 | 109.5° | 114.0° |
| PB | O2B | H2 | 109.5° | 114.0° |
| N6 | C6 | C5 | 120.6° | 120.8° |
| N6 | C6 | N1 | 118.7° | 120.8° |
| C6 | N6 | H10 | 109.5° | 119.9° |
| C6 | N6 | H11 | 109.5° | 120.0° |
| O5' | C5' | C4' | 109.3° | 109.5° |
| O5' | C5' | H4 | 109.5° | 109.5° |
| O5' | C5' | H5 | 109.5° | 109.5° |
| C8 | C16 | C5 | 109.5° | 106.8° |
| C16 | C8 | N9 | 107.4° | 109.8° |
| C16 | C8 | H8 | 126.3° | 125.1° |
| C8 | C16 | H9 | 125.2° | 126.6° |
| C16 | C5 | C6 | 133.7° | 135.1° |
| C16 | C5 | C4 | 106.5° | 106.2° |
| C5 | C16 | H9 | 125.2° | 126.6° |
| C8 | N9 | C4 | 108.2° | 110.0° |
| C8 | N9 | C1' | 125.8° | 125.0° |
| N9 | C8 | H8 | 126.3° | 125.1° |
| C6 | C5 | C4 | 119.8° | 118.7° |
| C5 | C6 | N1 | 120.7° | 118.3° |
| C5 | C4 | N9 | 108.4° | 107.1° |
| C5 | C4 | N3 | 121.6° | 118.6° |
| C6 | N1 | C2 | 120.6° | 121.0° |
| C5' | C4' | O4' | 106.5° | 110.4° |
| C5' | C4' | C3' | 111.4° | 110.4° |
| C4' | C5' | H4 | 109.5° | 109.4° |
| C4' | C5' | H5 | 109.5° | 109.5° |
| C5' | C4' | H6 | 109.7° | 110.3° |
| C4' | O4' | C1' | 105.2° | 105.3° |
| O4' | C4' | C3' | 108.5° | 104.8° |
| O4' | C4' | H6 | 111.0° | 110.5° |
| O4' | C1' | N9 | 111.1° | 110.4° |
| O4' | C1' | C2' | 103.6° | 104.8° |
| O4' | C1' | H7 | 110.5° | 110.4° |
| C4 | N9 | C1' | 126.0° | 125.0° |
| N9 | C4 | N3 | 130.0° | 134.3° |
| N9 | C1' | C2' | 112.8° | 110.4° |
| N9 | C1' | H7 | 109.8° | 110.5° |
| C4 | N3 | C2 | 119.5° | 120.7° |
| N1 | C2 | N3 | 117.9° | 122.7° |
| N1 | C2 | H12 | 121.1° | 118.7° |
| C4' | C3' | C2' | 102.7° | 104.1° |
| C4' | C3' | O3' | 109.8° | 110.6° |
| C3' | C4' | H6 | 109.7° | 110.4° |
| C4' | C3' | H15 | 109.8° | 110.5° |
| C1' | C2' | C3' | 100.7° | 104.1° |
| C1' | C2' | O2' | 112.9° | 110.5° |
| C2' | C1' | H7 | 108.9° | 110.4° |
| C1' | C2' | H13 | 110.5° | 110.5° |
| N3 | C2 | H12 | 121.1° | 118.6° |
| C3' | C2' | O2' | 109.2° | 110.5° |
| C2' | C3' | O3' | 112.9° | 110.5° |
| C3' | C2' | H13 | 111.1° | 110.5° |
| C2' | C3' | H15 | 110.2° | 110.5° |
| O2' | C2' | H13 | 111.9° | 110.6° |
| C2' | O2' | H14 | 109.5° | 114.0° |
| O3' | C3' | H15 | 111.1° | 110.5° |
| C3' | O3' | H16 | 109.5° | 114.0° |
| H4 | C5' | H5 | 109.5° | 109.5° |
| H10 | N6 | H11 | 109.4° | 120.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3B | PB | O3A | PA | 49.0° | 40.0° |
| O3B | PB | O3A | O1B | 124.6° | 120.0° |
| O3B | PB | O3A | O2B | 120.2° | 120.0° |
| O3B | PB | O1B | O2B | 127.9° | 120.0° |
| O3B | PB | O1B | H1 | 0.0° | 60.0° |
| O3B | PB | O2B | H2 | 0.0° | 180.0° |
| O2A | PA | O1A | O3A | 124.2° | 120.0° |
| O2A | PA | O1A | O5' | 122.5° | 120.0° |
| O2A | PA | O3A | O5' | 116.9° | 120.0° |
| O2A | PA | O3A | PB | 1.4° | 40.0° |
| O2A | PA | O5' | C5' | 174.1° | 55.1° |
| O2A | PA | O1A | H3 | 0.0° | 180.0° |
| O1A | PA | O3A | O5' | 116.3° | 120.0° |
| O1A | PA | O3A | PB | 128.2° | 80.0° |
| O1A | PA | O5' | C5' | 58.5° | 65.0° |
| PA | O3A | PB | O1B | 173.7° | 160.0° |
| PA | O3A | PB | O2B | 71.2° | 80.0° |
| O3A | PA | O5' | C5' | 54.2° | 175.0° |
| O3A | PA | O1A | H3 | 124.2° | 60.0° |
| O5' | PA | O3A | PB | 115.5° | 160.0° |
| PA | O5' | C5' | C4' | 173.5° | 180.0° |
| O5' | PA | O1A | H3 | 122.5° | 60.0° |
| PA | O5' | C5' | H4 | 53.5° | 60.1° |
| PA | O5' | C5' | H5 | 66.6° | 60.0° |
| O3A | PB | O1B | O2B | 110.7° | 120.0° |
| O3A | PB | O1B | H1 | 121.4° | 180.0° |
| O3A | PB | O2B | H2 | 120.5° | 60.0° |
| O1B | PB | O2B | H2 | 130.7° | 60.0° |
| O2B | PB | O1B | H1 | 127.9° | 60.0° |
| N6 | C6 | C5 | C16 | 1.6° | 0.0° |
| N6 | C6 | C5 | N1 | 179.0° | 180.0° |
| N6 | C6 | C5 | C4 | 179.2° | 180.0° |
| N6 | C6 | N1 | C2 | 179.9° | 180.0° |
| C6 | N6 | H10 | H11 | 120.0° | 180.0° |
| O5' | C5' | C4' | H4 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5 | 120.0° | 120.0° |
| O5' | C5' | C4' | O4' | 59.8° | 69.6° |
| O5' | C5' | C4' | C3' | 177.9° | 175.0° |
| O5' | C5' | H4 | H5 | 120.1° | 120.0° |
| O5' | C5' | C4' | H6 | 60.4° | 52.8° |
| C8 | C16 | C5 | H9 | 180.0° | 180.0° |
| C16 | C8 | N9 | H8 | 180.0° | 179.9° |
| C8 | C16 | C5 | C6 | 179.2° | 180.0° |
| C8 | C16 | C5 | C4 | 1.3° | 0.0° |
| C16 | C8 | N9 | C4 | 0.3° | 0.0° |
| C16 | C8 | N9 | C1' | 176.9° | 179.8° |
| C5 | C16 | C8 | N9 | 0.6° | 0.0° |
| C16 | C5 | C6 | C4 | 177.7° | 180.0° |
| C16 | C5 | C6 | N1 | 177.5° | 180.0° |
| C16 | C5 | C4 | N9 | 1.5° | 0.0° |
| C16 | C5 | C4 | N3 | 179.6° | 179.9° |
| C5 | C16 | C8 | H8 | 179.4° | 179.9° |
| C8 | N9 | C4 | C5 | 1.1° | 0.0° |
| C8 | N9 | C1' | O4' | 60.7° | 23.8° |
| C8 | N9 | C4 | C1' | 176.7° | 179.8° |
| C8 | N9 | C4 | N3 | 179.9° | 179.9° |
| C8 | N9 | C1' | C2' | 55.2° | 91.5° |
| C8 | N9 | C1' | H7 | 176.7° | 146.1° |
| N9 | C8 | C16 | H9 | 179.3° | 180.0° |
| C6 | C5 | C4 | N9 | 179.7° | 180.0° |
| C6 | C5 | C4 | N3 | 1.4° | 0.1° |
| C5 | C6 | N1 | C2 | 1.0° | 0.0° |
| C6 | C5 | C16 | H9 | 0.8° | 0.0° |
| C5 | C6 | N6 | H10 | 179.1° | 0.0° |
| C5 | C6 | N6 | H11 | 60.9° | 180.0° |
| C4 | C5 | C6 | N1 | 0.2° | 0.0° |
| C5 | C4 | N9 | N3 | 178.8° | 179.9° |
| C5 | C4 | N9 | C1' | 177.8° | 179.8° |
| C5 | C4 | N3 | C2 | 2.0° | 0.0° |
| C4 | C5 | C16 | H9 | 178.6° | 180.0° |
| C6 | N1 | C2 | N3 | 0.4° | 0.0° |
| N1 | C6 | N6 | H10 | 0.0° | 180.0° |
| N1 | C6 | N6 | H11 | 120.0° | 0.0° |
| C6 | N1 | C2 | H12 | 179.6° | 179.9° |
| C5' | C4' | O4' | C3' | 120.1° | 118.8° |
| C5' | C4' | O4' | H6 | 119.4° | 122.3° |
| C5' | C4' | O4' | C1' | 139.2° | 159.4° |
| C5' | C4' | C3' | H6 | 121.7° | 122.2° |
| C5' | C4' | C3' | C2' | 108.0° | 142.8° |
| C5' | C4' | C3' | O3' | 131.7° | 98.5° |
| C4' | C5' | H4 | H5 | 120.1° | 120.0° |
| C5' | C4' | C3' | H15 | 9.3° | 24.2° |
| C4' | O4' | C1' | N9 | 160.5° | 159.3° |
| O4' | C4' | C3' | H6 | 121.3° | 119.0° |
| C4' | O4' | C1' | C2' | 39.2° | 40.5° |
| O4' | C4' | C3' | C2' | 9.0° | 24.0° |
| O4' | C4' | C3' | O3' | 111.3° | 142.6° |
| O4' | C4' | C5' | H4 | 60.2° | 50.4° |
| O4' | C4' | C5' | H5 | 179.8° | 170.4° |
| C4' | O4' | C1' | H7 | 77.3° | 78.3° |
| O4' | C4' | C3' | H15 | 126.3° | 94.7° |
| O4' | C1' | N9 | C4 | 123.2° | 156.5° |
| O4' | C1' | N9 | C2' | 115.8° | 115.4° |
| O4' | C1' | N9 | H7 | 122.6° | 122.3° |
| C1' | O4' | C4' | C3' | 19.2° | 40.5° |
| O4' | C1' | C2' | H7 | 117.7° | 118.8° |
| O4' | C1' | C2' | C3' | 44.2° | 24.0° |
| O4' | C1' | C2' | O2' | 160.5° | 142.6° |
| C1' | O4' | C4' | H6 | 101.4° | 78.4° |
| O4' | C1' | C2' | H13 | 73.3° | 94.7° |
| C4 | N9 | C1' | C2' | 120.9° | 88.2° |
| N9 | C4 | N3 | C2 | 179.4° | 180.0° |
| C4 | N9 | C1' | H7 | 0.6° | 34.1° |
| C4 | N9 | C8 | H8 | 179.7° | 179.9° |
| C1' | N9 | C4 | N3 | 3.4° | 0.3° |
| N9 | C1' | C2' | H7 | 122.1° | 122.4° |
| N9 | C1' | C2' | C3' | 164.5° | 142.8° |
| N9 | C1' | C2' | O2' | 79.3° | 98.6° |
| C1' | N9 | C8 | H8 | 3.0° | 0.2° |
| N9 | C1' | C2' | H13 | 46.9° | 24.1° |
| C4 | N3 | C2 | N1 | 1.1° | 0.0° |
| C4 | N3 | C2 | H12 | 179.0° | 179.9° |
| N1 | C2 | N3 | H12 | 180.0° | 179.9° |
| C4' | C3' | C2' | C1' | 30.8° | 0.0° |
| C4' | C3' | C2' | O3' | 118.2° | 118.7° |
| C4' | C3' | C2' | H15 | 117.0° | 118.7° |
| C4' | C3' | C2' | O2' | 149.8° | 118.6° |
| C4' | C3' | O3' | H15 | 121.7° | 122.7° |
| C3' | C4' | C5' | H4 | 58.0° | 65.0° |
| C3' | C4' | C5' | H5 | 62.1° | 55.0° |
| C4' | C3' | C2' | H13 | 86.3° | 118.7° |
| C4' | C3' | O3' | H16 | 180.0° | 180.0° |
| C1' | C2' | C3' | O2' | 119.0° | 118.6° |
| C1' | C2' | C3' | H13 | 117.1° | 118.7° |
| C1' | C2' | O2' | H13 | 125.5° | 122.7° |
| C1' | C2' | C3' | O3' | 87.3° | 118.7° |
| C1' | C2' | O2' | H14 | 180.0° | 180.0° |
| C1' | C2' | C3' | H15 | 147.8° | 118.7° |
| C3' | C2' | O2' | H13 | 123.4° | 122.7° |
| C2' | C3' | O3' | H15 | 124.4° | 122.6° |
| C2' | C3' | C4' | H6 | 130.3° | 95.0° |
| C3' | C2' | C1' | H7 | 73.5° | 94.8° |
| C3' | C2' | O2' | H14 | 68.9° | 65.4° |
| C2' | C3' | O3' | H16 | 66.1° | 65.3° |
| O2' | C2' | C3' | O3' | 31.7° | 0.0° |
| O2' | C2' | C1' | H7 | 42.8° | 23.8° |
| O2' | C2' | C3' | H15 | 93.2° | 122.7° |
| O3' | C3' | C4' | H6 | 10.0° | 23.7° |
| O3' | C3' | C2' | H13 | 155.6° | 122.6° |
| H4 | C5' | C4' | H6 | 179.6° | 172.8° |
| H5 | C5' | C4' | H6 | 59.6° | 67.2° |
| H6 | C4' | C3' | H15 | 112.4° | 146.4° |
| H7 | C1' | C2' | H13 | 169.0° | 146.5° |
| H8 | C8 | C16 | H9 | 0.7° | 0.1° |
| H13 | C2' | O2' | H14 | 54.5° | 57.3° |
| H13 | C2' | C3' | H15 | 30.7° | 0.0° |
| H15 | C3' | O3' | H16 | 58.3° | 57.3° |
