Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7D4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O26P25doub1.48Å1.56Å
O28P25sing1.61Å1.56Å
P25O27sing1.61Å1.53Å
P25O24sing1.61Å1.56Å
O30C29sing1.43Å1.38Å
O24P21sing1.61Å1.65Å
C29C12sing1.53Å1.56Å
C13C15sing1.53Å1.52Å
C13O14sing1.44Å1.47Å
C13C12sing1.54Å1.40Å
C15O16sing1.43Å1.39Å
O14C11sing1.44Å1.40Å
C12C11sing1.54Å1.47Å
C11N10sing1.47Å1.40Å
P21O22doub1.48Å1.51Å
P21O23sing1.61Å1.55Å
P21O20sing1.61Å1.61Å
O19P17doub1.48Å1.49Å
O16P17sing1.61Å1.59Å
O20P17sing1.61Å1.63Å
P17O18sing1.61Å1.48Å
N10C03sing1.37Å1.39ÅAromatic
N10C09sing1.36Å1.34ÅAromatic
N02C03doub1.33Å1.39ÅAromatic
N02C01sing1.32Å1.32ÅAromatic
C03C04sing1.40Å1.40ÅAromatic
C09N08doub1.30Å1.34ÅAromatic
C01N06doub1.32Å1.33ÅAromatic
C04N08sing1.35Å1.37ÅAromatic
C04C05doub1.41Å1.43ÅAromatic
N06C05sing1.33Å1.36ÅAromatic
C05N07sing1.38Å1.40Å
C01H1sing1.08Å1.08Å
N07H2sing0.97Å1.00Å
N07H3sing0.97Å1.00Å
C09H4sing1.08Å1.08Å
C11H5sing1.09Å1.10Å
C12H6sing1.09Å1.10Å
C13H7sing1.09Å1.10Å
C15H8sing1.09Å1.10Å
C15H9sing1.09Å1.10Å
O18H10sing0.97Å0.95Å
O23H11sing0.97Å0.95Å
O27H12sing0.97Å0.95Å
O28H13sing0.97Å0.95Å
C29H14sing1.09Å1.10Å
C29H15sing1.09Å1.10Å
O30H16sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O26P25O28108.0°109.5°
O26P25O27107.7°109.5°
O26P25O24111.5°109.5°
O28P25O27110.1°109.5°
O28P25O24109.7°109.5°
P25O28H13109.5°114.0°
O27P25O24109.8°109.5°
P25O27H12109.5°114.0°
P25O24P21127.5°134.0°
O30C29C12110.9°109.5°
O30C29H14109.1°109.5°
O30C29H15109.1°109.5°
C29O30H16109.5°114.0°
O24P21O22111.5°109.5°
O24P21O23110.3°109.4°
O24P21O20109.1°109.5°
C29C12C13111.6°113.9°
C29C12C11114.0°113.8°
C29C12H6111.8°113.0°
C12C29H14109.1°109.5°
C12C29H15109.1°109.5°
C15C13O14113.2°113.8°
C15C13C12115.2°113.9°
C13C15O16110.5°109.5°
C15C13H7111.6°113.1°
C13C15H8109.2°109.4°
C13C15H9109.2°109.5°
O14C13C1289.2°85.5°
C13O14C1190.5°93.2°
O14C13H7112.4°113.9°
C13C12C1190.4°85.8°
C13C12H6114.4°113.8°
C12C13H7113.5°113.8°
C15O16P17121.4°123.0°
O16C15H8109.2°109.5°
O16C15H9109.2°109.5°
O14C11C1288.6°85.6°
O14C11N10112.7°113.9°
O14C11H5112.7°113.9°
C12C11N10116.2°113.8°
C12C11H5111.6°113.9°
C11C12H6113.1°113.9°
C11N10C03126.5°126.3°
C11N10C09125.9°126.2°
N10C11H5112.8°113.0°
O22P21O23108.6°109.4°
O22P21O20109.4°109.5°
O23P21O20107.9°109.5°
P21O23H11109.5°114.0°
P21O20P17128.0°134.0°
O19P17O16110.7°109.5°
O19P17O20110.3°109.5°
O19P17O18109.1°109.5°
O16P17O20108.8°109.5°
O16P17O18109.7°109.5°
O20P17O18108.2°109.5°
P17O18H10109.5°114.0°
C03N10C09107.6°107.5°
N10C03N02134.6°134.9°
N10C03C04106.9°106.0°
N10C09N08110.5°109.9°
N10C09H4124.7°125.1°
C03N02C01120.6°120.6°
N02C03C04118.5°119.1°
N02C01N06122.9°122.5°
N02C01H1118.6°118.7°
C03C04N08106.7°107.2°
C03C04C05118.3°118.1°
C09N08C04108.4°109.4°
N08C09H4124.8°125.0°
C01N06C05120.6°121.1°
N06C01H1118.5°118.7°
N08C04C05135.0°134.7°
C04C05N06119.1°118.5°
C04C05N07120.7°120.8°
N06C05N07120.2°120.7°
C05N07H2109.5°120.0°
C05N07H3109.4°120.0°
H2N07H3109.5°120.0°
H8C15H9109.5°109.5°
H14C29H15109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O26P25O28O27117.4°120.0°
O26P25O28O24121.6°120.0°
O26P25O27O24121.6°120.0°
O26P25O24P21175.3°45.0°
O26P25O27H120.0°60.0°
O26P25O28H130.0°179.9°
O28P25O27O24120.9°120.0°
O28P25O24P2165.1°74.9°
O28P25O27H12117.5°60.0°
O27P25O24P2156.0°165.0°
O27P25O28H13117.4°60.0°
P25O24P21O223.5°44.9°
P25O24P21O23117.3°75.0°
P25O24P21O20124.4°165.0°
O24P25O27H12121.6°180.0°
O24P25O28H13121.6°60.0°
O30C29C12H14120.2°120.0°
O30C29C12H15120.2°120.0°
O30C29C12C1351.0°88.8°
O30C29C12C1149.6°175.0°
O30C29C12H6179.4°43.1°
O30C29H14H15119.3°120.0°
O24P21O22O23121.8°119.9°
O24P21O22O20120.7°120.1°
O24P21O23O20119.0°120.0°
O24P21O20P1783.8°160.0°
O24P21O23H11122.5°60.1°
C29C12C13C15120.0°109.2°
C29C12C13O14124.6°136.7°
C29C12C13C11116.1°114.2°
C29C12C13H6128.2°131.5°
C29C12C11O14122.9°136.8°
C29C12C11H6129.1°131.5°
C29C12C11N10122.4°108.9°
C29C12C11H58.9°22.6°
C29C12C13H710.5°22.5°
C12C29H14H15119.3°120.0°
C12C29O30H16180.0°180.0°
C15C13O14C12117.2°114.2°
C15C13O14H7127.6°131.6°
C15C13C12H7130.5°131.7°
C13C15O16H8120.1°120.0°
C13C15O16H9120.1°120.0°
C15C13O14C11126.2°138.4°
C15C13C12C11123.9°136.6°
C13C15O16P17159.5°180.0°
C15C13C12H68.2°22.4°
C13C15H8H9119.5°120.0°
O14C13C12H7114.2°114.2°
O14C13C15O1644.2°84.5°
O14C13C12C118.5°22.5°
C13O14C11N10126.4°138.3°
C13O14C11H5104.4°90.1°
O14C13C12H6107.2°91.8°
O14C13C15H876.0°155.5°
O14C13C15H9164.3°35.5°
C12C13C15O1656.4°179.5°
C13C12C11H6116.9°114.2°
C13C12C11N10123.6°136.7°
C13C12C11H5105.1°91.7°
C12C13C15H8176.6°59.6°
C12C13C15H963.7°60.4°
C13C12C29H1469.2°31.2°
C13C12C29H15171.3°151.2°
C15O16P17O1934.7°55.0°
C15O16P17O2086.7°175.0°
C15O16P17O18155.1°65.0°
O16C15C13H7172.1°47.5°
O16C15H8H9119.5°120.1°
O14C11C12N10114.7°114.2°
O14C11C12H5114.0°114.2°
O14C11N10H5129.1°132.0°
O14C11N10C03121.7°176.7°
O14C11N10C0957.8°3.3°
O14C11C12H6108.0°91.7°
C11O14C13H7106.3°90.0°
C12C11N10H5130.7°132.0°
C12C11N10C03138.2°87.3°
C12C11N10C0942.4°92.7°
C11C12C13H7105.6°91.7°
C11C12C29H14169.8°65.0°
C11C12C29H1570.6°55.0°
C11N10C03C09179.5°180.0°
C11N10C03N021.0°0.0°
C11N10C03C04179.7°180.0°
C11N10C09N08179.7°180.0°
C11N10C09H40.3°0.0°
N10C11C12H66.7°22.5°
O22P21O23O20118.5°120.0°
O22P21O20P1738.4°40.0°
O22P21O23H110.0°180.0°
O23P21O20P17156.4°80.0°
P21O20P17O190.9°45.0°
P21O20P17O16122.5°165.0°
P21O20P17O18118.3°75.0°
O20P21O23H11118.5°60.0°
O19P17O16O20121.4°120.0°
O19P17O16O18120.4°120.0°
O19P17O20O18119.3°120.0°
O19P17O18H100.0°180.0°
O16P17O20O18119.2°120.0°
P17O16C15H839.4°60.0°
P17O16C15H980.3°60.0°
O16P17O18H10121.3°59.9°
O20P17O18H10120.1°60.1°
N10C03N02C04179.2°180.0°
N10C03N02C01179.7°180.0°
C03N10C09N080.1°0.0°
N10C03C04N080.2°0.0°
N10C03C04C05179.6°180.0°
C03N10C09H4179.8°180.0°
C03N10C11H57.4°44.7°
C09N10C03N02179.5°180.0°
C09N10C03C040.2°0.0°
N10C09N08H4180.0°180.0°
N10C09N08C040.0°0.0°
C09N10C11H5173.1°135.3°
C03N02C01N060.5°0.1°
N02C03C04N08179.6°180.0°
N02C03C04C050.2°0.0°
C03N02C01H1179.5°179.7°
C01N02C03C040.5°0.1°
N02C01N06H1180.0°179.8°
N02C01N06C050.1°0.1°
C03C04N08C090.1°0.0°
C03C04N08C05179.7°179.9°
C03C04C05N060.2°0.0°
C03C04C05N07179.7°180.0°
C09N08C04C05179.6°180.0°
C01N06C05C040.2°0.0°
C01N06C05N07179.7°180.0°
N08C04C05N06179.9°180.0°
N08C04C05N070.6°0.1°
C04N08C09H4180.0°179.9°
C04C05N06N07179.5°180.0°
C04C05N07H2179.5°0.0°
C04C05N07H359.5°179.9°
C05N06C01H1179.9°179.7°
N06C05N07H20.0°180.0°
N06C05N07H3120.0°0.1°
C05N07H2H3120.0°179.9°
H5C11C12H6138.0°154.1°
H6C12C13H7138.7°154.1°
H6C12C29H1460.4°163.2°
H6C12C29H1559.2°76.8°
H7C13C15H852.0°72.5°
H7C13C15H967.7°167.5°
H14C29O30H1659.8°60.0°
H15C29O30H1659.7°60.0°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon