7CH
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C2 | N3 | doub | 1.31Å | 1.35Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.35Å | Aromatic |
N3 | C4 | sing | 1.33Å | 1.34Å | Aromatic |
O2' | C2' | sing | 1.43Å | 1.44Å | |
C4' | O4' | sing | 1.43Å | 1.42Å | |
C4' | C5' | sing | 1.52Å | 1.51Å | |
C4' | C3' | sing | 1.55Å | 1.51Å | |
O4' | C1' | sing | 1.47Å | 1.43Å | |
C5' | O5' | sing | 1.45Å | 1.42Å | |
C1' | C2' | sing | 1.55Å | 1.51Å | |
C1' | N9 | sing | 1.47Å | 1.47Å | |
O5' | P | sing | 1.62Å | 1.63Å | |
N1 | C6 | doub | 1.33Å | 1.35Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.32Å | Aromatic |
C4 | C5 | doub | 1.41Å | 1.46Å | Aromatic |
C2' | C3' | sing | 1.53Å | 1.51Å | |
N9 | C8 | sing | 1.37Å | 1.36Å | Aromatic |
C3' | O3' | sing | 1.43Å | 1.41Å | |
O3' | P | sing | 1.63Å | 1.62Å | |
O2P | P | doub | 1.48Å | 1.50Å | |
P | O1P | sing | 1.61Å | 1.50Å | |
C6 | C5 | sing | 1.40Å | 1.49Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.37Å | |
C5 | C7 | sing | 1.46Å | 1.34Å | Aromatic |
C8 | C7 | doub | 1.34Å | 1.36Å | Aromatic |
O1P | H1 | sing | 0.97Å | 0.95Å | |
C3' | H2 | sing | 1.09Å | 1.10Å | |
C4' | H3 | sing | 1.09Å | 1.10Å | |
C5' | H4 | sing | 1.09Å | 1.10Å | |
C5' | H5 | sing | 1.09Å | 1.10Å | |
C2' | H6 | sing | 1.09Å | 1.10Å | |
O2' | H7 | sing | 0.97Å | 0.95Å | |
C1' | H8 | sing | 1.09Å | 1.10Å | |
C7 | H9 | sing | 1.08Å | 1.08Å | |
C8 | H10 | sing | 1.08Å | 1.08Å | |
C2 | H11 | sing | 1.08Å | 1.08Å | |
N6 | H12 | sing | 0.97Å | 1.00Å | |
N6 | H13 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N3 | C2 | N1 | 123.6° | 122.7° |
C2 | N3 | C4 | 120.9° | 120.7° |
N3 | C2 | H11 | 118.2° | 118.7° |
C2 | N1 | C6 | 121.0° | 121.1° |
N1 | C2 | H11 | 118.2° | 118.6° |
N3 | C4 | N9 | 133.4° | 134.3° |
N3 | C4 | C5 | 119.9° | 118.6° |
O2' | C2' | C1' | 111.3° | 110.8° |
O2' | C2' | C3' | 110.5° | 110.7° |
O2' | C2' | H6 | 112.0° | 110.5° |
C2' | O2' | H7 | 109.5° | 114.0° |
O4' | C4' | C5' | 114.8° | 116.6° |
O4' | C4' | C3' | 98.7° | 103.0° |
C4' | O4' | C1' | 105.4° | 105.3° |
O4' | C4' | H3 | 109.4° | 109.6° |
C5' | C4' | C3' | 117.1° | 109.0° |
C4' | C5' | O5' | 104.4° | 106.8° |
C5' | C4' | H3 | 108.2° | 109.5° |
C4' | C5' | H4 | 110.7° | 110.0° |
C4' | C5' | H5 | 110.7° | 110.0° |
C4' | C3' | C2' | 101.4° | 101.7° |
C4' | C3' | O3' | 110.0° | 106.2° |
C4' | C3' | H2 | 108.7° | 111.4° |
C3' | C4' | H3 | 108.2° | 108.8° |
O4' | C1' | C2' | 107.1° | 106.9° |
O4' | C1' | N9 | 108.9° | 109.7° |
O4' | C1' | H8 | 110.2° | 110.4° |
C5' | O5' | P | 117.4° | 120.1° |
O5' | C5' | H4 | 110.7° | 109.9° |
O5' | C5' | H5 | 110.7° | 110.0° |
C2' | C1' | N9 | 112.0° | 109.9° |
C1' | C2' | C3' | 100.7° | 103.3° |
C1' | C2' | H6 | 110.9° | 110.7° |
C2' | C1' | H8 | 109.0° | 109.9° |
C1' | N9 | C4 | 123.4° | 124.9° |
C1' | N9 | C8 | 128.2° | 125.0° |
N9 | C1' | H8 | 109.7° | 109.9° |
O5' | P | O3' | 102.6° | 107.0° |
O5' | P | O2P | 107.6° | 110.0° |
O5' | P | O1P | 105.3° | 109.9° |
N1 | C6 | C5 | 118.3° | 118.3° |
N1 | C6 | N6 | 121.3° | 120.8° |
N9 | C4 | C5 | 106.7° | 107.1° |
C4 | N9 | C8 | 108.3° | 110.1° |
C4 | C5 | C6 | 116.2° | 118.7° |
C4 | C5 | C7 | 107.5° | 106.2° |
C2' | C3' | O3' | 117.5° | 114.6° |
C2' | C3' | H2 | 108.7° | 111.3° |
C3' | C2' | H6 | 110.9° | 110.7° |
N9 | C8 | C7 | 111.0° | 109.8° |
N9 | C8 | H10 | 124.5° | 125.1° |
C3' | O3' | P | 110.1° | 116.6° |
O3' | C3' | H2 | 110.1° | 111.2° |
O3' | P | O2P | 109.4° | 110.0° |
O3' | P | O1P | 109.3° | 110.0° |
O2P | P | O1P | 121.0° | 109.9° |
P | O1P | H1 | 109.5° | 114.0° |
C5 | C6 | N6 | 120.4° | 120.9° |
C6 | C5 | C7 | 136.3° | 135.1° |
C6 | N6 | H12 | 109.5° | 120.0° |
C6 | N6 | H13 | 109.5° | 120.0° |
C5 | C7 | C8 | 106.4° | 106.8° |
C5 | C7 | H9 | 126.8° | 126.6° |
C8 | C7 | H9 | 126.8° | 126.6° |
C7 | C8 | H10 | 124.5° | 125.1° |
H4 | C5' | H5 | 109.5° | 110.1° |
H12 | N6 | H13 | 109.5° | 119.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N3 | C2 | N1 | H11 | 180.0° | 179.9° |
N3 | C2 | N1 | C6 | 2.1° | 0.0° |
C2 | N3 | C4 | N9 | 177.7° | 180.0° |
C2 | N3 | C4 | C5 | 3.0° | 0.1° |
N1 | C2 | N3 | C4 | 3.0° | 0.1° |
C2 | N1 | C6 | C5 | 1.2° | 0.0° |
C2 | N1 | C6 | N6 | 179.8° | 180.0° |
N3 | C4 | N9 | C1' | 0.1° | 0.1° |
N3 | C4 | N9 | C5 | 179.4° | 179.9° |
N3 | C4 | N9 | C8 | 177.3° | 179.8° |
N3 | C4 | C5 | C6 | 2.1° | 0.1° |
N3 | C4 | C5 | C7 | 177.3° | 179.9° |
C4 | N3 | C2 | H11 | 177.0° | 180.0° |
O2' | C2' | C3' | C4' | 82.9° | 93.3° |
O2' | C2' | C1' | O4' | 109.7° | 117.7° |
O2' | C2' | C1' | C3' | 117.1° | 118.5° |
O2' | C2' | C1' | H6 | 125.4° | 123.0° |
O2' | C2' | C1' | N9 | 130.9° | 123.3° |
O2' | C2' | C3' | H6 | 124.9° | 122.9° |
O2' | C2' | C3' | O3' | 36.9° | 20.7° |
O2' | C2' | C3' | H2 | 162.7° | 148.0° |
O2' | C2' | C1' | H8 | 9.4° | 2.2° |
O4' | C4' | C5' | C3' | 115.0° | 116.0° |
O4' | C4' | C5' | H3 | 122.5° | 125.1° |
O4' | C4' | C3' | H3 | 113.8° | 116.2° |
O4' | C4' | C5' | O5' | 169.5° | 176.9° |
C4' | O4' | C1' | C2' | 25.1° | 26.8° |
C4' | O4' | C1' | N9 | 146.4° | 145.9° |
O4' | C4' | C3' | C2' | 50.5° | 42.7° |
O4' | C4' | C3' | O3' | 175.5° | 162.9° |
O4' | C4' | C3' | H2 | 63.9° | 75.9° |
O4' | C4' | C5' | H4 | 50.3° | 63.8° |
O4' | C4' | C5' | H5 | 71.3° | 57.5° |
C4' | O4' | C1' | H8 | 93.3° | 92.8° |
C5' | C4' | C3' | H3 | 122.5° | 119.4° |
C5' | C4' | O4' | C1' | 171.8° | 162.5° |
C4' | C5' | O5' | H4 | 119.2° | 119.3° |
C4' | C5' | O5' | H5 | 119.2° | 119.4° |
C4' | C5' | O5' | P | 55.9° | 49.5° |
C5' | C4' | C3' | C2' | 174.2° | 167.1° |
C5' | C4' | C3' | O3' | 60.8° | 72.6° |
C5' | C4' | C3' | H2 | 59.8° | 48.6° |
C4' | C5' | H4 | H5 | 122.3° | 121.3° |
C3' | C4' | O4' | C1' | 46.5° | 43.2° |
C3' | C4' | C5' | O5' | 54.5° | 67.1° |
C4' | C3' | C2' | C1' | 34.8° | 25.3° |
C4' | C3' | C2' | O3' | 119.8° | 114.0° |
C4' | C3' | C2' | H2 | 114.4° | 118.7° |
C4' | C3' | O3' | H2 | 119.7° | 121.3° |
C4' | C3' | O3' | P | 60.9° | 57.5° |
C3' | C4' | C5' | H4 | 64.7° | 52.2° |
C3' | C4' | C5' | H5 | 173.7° | 173.5° |
C4' | C3' | C2' | H6 | 152.2° | 143.8° |
O4' | C1' | C2' | N9 | 119.3° | 119.0° |
O4' | C1' | C2' | H8 | 119.2° | 119.9° |
O4' | C1' | N9 | H8 | 120.6° | 121.6° |
O4' | C1' | N9 | C4 | 135.0° | 157.4° |
O4' | C1' | C2' | C3' | 7.4° | 0.8° |
O4' | C1' | N9 | C8 | 41.5° | 22.2° |
C1' | O4' | C4' | H3 | 66.3° | 72.5° |
O4' | C1' | C2' | H6 | 124.8° | 119.3° |
C5' | O5' | P | O3' | 58.9° | 33.8° |
C5' | O5' | P | O2P | 174.2° | 153.3° |
C5' | O5' | P | O1P | 55.5° | 85.6° |
O5' | C5' | C4' | H3 | 68.0° | 51.8° |
O5' | C5' | H4 | H5 | 122.3° | 121.3° |
C2' | C1' | N9 | H8 | 121.1° | 121.1° |
C2' | C1' | N9 | C4 | 106.7° | 85.3° |
C1' | C2' | C3' | H6 | 117.4° | 118.5° |
C2' | C1' | N9 | C8 | 76.8° | 95.0° |
C1' | C2' | C3' | O3' | 154.6° | 139.4° |
C1' | C2' | C3' | H2 | 79.6° | 93.4° |
C1' | C2' | O2' | H7 | 180.0° | 66.0° |
C1' | N9 | C4 | C8 | 177.1° | 179.7° |
C1' | N9 | C4 | C5 | 179.3° | 180.0° |
N9 | C1' | C2' | C3' | 112.0° | 118.2° |
C1' | N9 | C8 | C7 | 178.3° | 179.8° |
N9 | C1' | C2' | H6 | 5.5° | 0.3° |
C1' | N9 | C8 | H10 | 1.7° | 0.1° |
O5' | P | O3' | C3' | 57.8° | 38.0° |
O5' | P | O3' | O2P | 114.1° | 119.4° |
O5' | P | O3' | O1P | 111.4° | 119.4° |
O5' | P | O2P | O1P | 120.9° | 121.2° |
O5' | P | O1P | H1 | 122.0° | 61.2° |
P | O5' | C5' | H4 | 63.3° | 69.8° |
P | O5' | C5' | H5 | 175.1° | 168.9° |
N1 | C6 | C5 | C4 | 1.2° | 0.1° |
N1 | C6 | C5 | N6 | 178.7° | 180.0° |
N1 | C6 | C5 | C7 | 177.9° | 180.0° |
C6 | N1 | C2 | H11 | 177.9° | 179.9° |
N1 | C6 | N6 | H12 | 0.0° | 0.0° |
N1 | C6 | N6 | H13 | 120.0° | 180.0° |
N9 | C4 | C5 | C6 | 178.4° | 180.0° |
N9 | C4 | C5 | C7 | 2.2° | 0.0° |
C4 | N9 | C8 | C7 | 1.4° | 0.5° |
C4 | N9 | C1' | H8 | 14.4° | 35.8° |
C4 | N9 | C8 | H10 | 178.6° | 179.8° |
C5 | C4 | N9 | C8 | 2.1° | 0.3° |
C4 | C5 | C6 | C7 | 179.1° | 179.9° |
C4 | C5 | C6 | N6 | 179.9° | 180.0° |
C4 | C5 | C7 | C8 | 1.4° | 0.2° |
C4 | C5 | C7 | H9 | 178.7° | 179.9° |
C2' | C3' | O3' | H2 | 125.1° | 127.3° |
C2' | C3' | O3' | P | 176.1° | 168.8° |
C2' | C3' | C4' | H3 | 63.3° | 73.5° |
C3' | C2' | O2' | H7 | 69.0° | 180.0° |
C3' | C2' | C1' | H8 | 126.5° | 120.7° |
N9 | C8 | C7 | C5 | 0.1° | 0.4° |
N9 | C8 | C7 | H10 | 180.0° | 179.8° |
C8 | N9 | C1' | H8 | 162.1° | 143.9° |
N9 | C8 | C7 | H9 | 179.9° | 179.9° |
C3' | O3' | P | O2P | 171.8° | 157.4° |
C3' | O3' | P | O1P | 53.6° | 81.4° |
O3' | C3' | C4' | H3 | 61.7° | 46.7° |
O3' | C3' | C2' | H6 | 88.0° | 102.1° |
O3' | P | O2P | O1P | 128.3° | 121.3° |
O3' | P | O1P | H1 | 128.4° | 178.8° |
P | O3' | C3' | H2 | 58.8° | 63.9° |
O2P | P | O1P | H1 | 0.0° | 60.0° |
C6 | C5 | C7 | C8 | 179.5° | 179.7° |
C6 | C5 | C7 | H9 | 0.5° | 0.0° |
C5 | C6 | N6 | H12 | 178.7° | 180.0° |
C5 | C6 | N6 | H13 | 58.7° | 0.0° |
N6 | C6 | C5 | C7 | 0.8° | 0.1° |
C6 | N6 | H12 | H13 | 120.0° | 180.0° |
C5 | C7 | C8 | H9 | 180.0° | 179.7° |
C5 | C7 | C8 | H10 | 179.9° | 179.8° |
H2 | C3' | C4' | H3 | 177.7° | 167.9° |
H2 | C3' | C2' | H6 | 37.8° | 25.1° |
H3 | C4' | C5' | H4 | 172.8° | 171.1° |
H3 | C4' | C5' | H5 | 51.2° | 67.6° |
H6 | C2' | O2' | H7 | 55.2° | 57.1° |
H6 | C2' | C1' | H8 | 116.0° | 120.8° |
H9 | C7 | C8 | H10 | 0.1° | 0.1° |