777

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O6	C6	doub	1.22Å	1.26Å
N1	C6	sing	1.34Å	1.34Å
N1	C2	doub	1.32Å	1.35Å
C6	C5	sing	1.47Å	1.47Å
N2	C2	sing	1.37Å	1.36Å
C2	N3	sing	1.36Å	1.36Å
C5	N7	sing	1.35Å	1.35Å	Aromatic
C5	C4	doub	1.39Å	1.46Å	Aromatic
N7	C8	doub	1.30Å	1.35Å	Aromatic
N3	C4	sing	1.37Å	1.35Å
C4	N9	sing	1.36Å	1.33Å	Aromatic
C8	N9	sing	1.36Å	1.35Å	Aromatic
N9	C1'	sing	1.47Å	1.47Å
C1'	C2'	sing	1.55Å	1.52Å
C1'	O4'	sing	1.44Å	1.42Å
O2'	C2'	sing	1.43Å	1.43Å
C2'	C3'	sing	1.55Å	1.53Å
O4'	C4'	sing	1.44Å	1.43Å
C3'	C4'	sing	1.54Å	1.53Å
C3'	O3'	sing	1.43Å	1.44Å
C4'	C5'	sing	1.53Å	1.52Å
C5'	O5'	sing	1.43Å	1.43Å
O5'	P1	sing	1.61Å	1.61Å
O2	P1	doub	1.48Å	1.51Å
C1	N4	sing	1.47Å	1.46Å
C1	C3	sing	1.53Å	1.52Å
N4	P1	sing	1.68Å	1.72Å
P1	O3	sing	1.61Å	1.50Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C3	H4	sing	1.09Å	1.10Å
C3	H5	sing	1.09Å	1.10Å
N4	H6	sing	1.01Å	1.00Å
O3	H7	sing	0.97Å	0.95Å
C5'	H8	sing	1.09Å	1.10Å
C5'	H9	sing	1.09Å	1.10Å
C4'	H10	sing	1.09Å	1.10Å
C3'	H11	sing	1.09Å	1.10Å
O3'	H12	sing	0.97Å	0.95Å
C2'	H13	sing	1.09Å	1.10Å
O2'	H14	sing	0.97Å	0.95Å
C1'	H15	sing	1.09Å	1.10Å
N3	H16	sing	0.97Å	1.00Å
N2	H17	sing	0.97Å	1.00Å
N2	H18	sing	0.97Å	1.00Å
C8	H19	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O6	C6	N1	123.6°	120.7°
O6	C6	C5	119.2°	120.7°
C6	N1	C2	123.5°	121.3°
N1	C6	C5	117.2°	118.6°
N1	C2	N2	119.1°	118.8°
N1	C2	N3	122.5°	122.6°
C6	C5	N7	135.6°	134.4°
C6	C5	C4	116.7°	118.1°
N2	C2	N3	118.4°	118.7°
C2	N2	H17	120.0°	120.0°
C2	N2	H18	120.0°	120.0°
C2	N3	C4	119.0°	120.5°
C2	N3	H16	120.5°	119.8°
N7	C5	C4	107.7°	107.4°
C5	N7	C8	107.0°	109.1°
C5	C4	N3	121.0°	118.9°
C5	C4	N9	105.0°	106.4°
N7	C8	N9	110.1°	109.5°
N7	C8	H19	125.0°	125.2°
N3	C4	N9	133.9°	134.7°
C4	N3	H16	120.5°	119.7°
C4	N9	C8	110.2°	107.5°
C4	N9	C1'	122.8°	126.3°
C8	N9	C1'	127.0°	126.2°
N9	C8	H19	125.0°	125.2°
N9	C1'	C2'	112.4°	110.6°
N9	C1'	O4'	107.8°	110.7°
N9	C1'	H15	110.5°	110.6°
C2'	C1'	O4'	105.0°	103.5°
C1'	C2'	O2'	112.3°	110.9°
C1'	C2'	C3'	102.2°	102.0°
C1'	C2'	H13	108.6°	110.9°
C2'	C1'	H15	109.8°	110.6°
C1'	O4'	C4'	107.1°	107.0°
O4'	C1'	H15	111.3°	110.6°
O2'	C2'	C3'	115.0°	110.9°
O2'	C2'	H13	109.8°	110.8°
C2'	O2'	H14	109.5°	114.0°
C2'	C3'	C4'	104.5°	104.2°
C2'	C3'	O3'	113.7°	110.5°
C2'	C3'	H11	108.8°	110.6°
C3'	C2'	H13	108.5°	110.9°
O4'	C4'	C3'	107.0°	107.4°
O4'	C4'	C5'	107.3°	109.9°
O4'	C4'	H10	110.9°	109.9°
C4'	C3'	O3'	110.8°	110.5°
C3'	C4'	C5'	112.6°	109.9°
C3'	C4'	H10	109.4°	109.9°
C4'	C3'	H11	108.9°	110.5°
O3'	C3'	H11	110.0°	110.5°
C3'	O3'	H12	109.5°	114.0°
C4'	C5'	O5'	107.1°	109.5°
C4'	C5'	H8	110.1°	109.5°
C4'	C5'	H9	110.1°	109.5°
C5'	C4'	H10	109.6°	109.9°
C5'	O5'	P1	119.9°	123.0°
O5'	C5'	H8	110.1°	109.5°
O5'	C5'	H9	110.1°	109.4°
O5'	P1	O2	109.7°	109.5°
O5'	P1	N4	103.9°	109.4°
O5'	P1	O3	105.0°	109.5°
O2	P1	N4	109.2°	109.5°
O2	P1	O3	118.6°	109.5°
N4	C1	C3	110.3°	109.5°
C1	N4	P1	118.7°	111.0°
N4	C1	H1	109.3°	109.4°
N4	C1	H2	109.3°	109.5°
C1	N4	H6	107.2°	111.0°
C3	C1	H1	109.3°	109.5°
C3	C1	H2	109.3°	109.5°
C1	C3	H3	109.5°	109.5°
C1	C3	H4	109.5°	109.5°
C1	C3	H5	109.5°	109.5°
N4	P1	O3	109.4°	109.4°
P1	N4	H6	107.1°	111.0°
P1	O3	H7	109.5°	114.0°
H1	C1	H2	109.4°	109.5°
H3	C3	H4	109.5°	109.5°
H3	C3	H5	109.5°	109.4°
H4	C3	H5	109.5°	109.5°
H8	C5'	H9	109.4°	109.4°
H17	N2	H18	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O6	C6	N1	C5	178.8°	180.0°
O6	C6	N1	C2	179.8°	180.0°
O6	C6	C5	N7	1.2°	0.2°
O6	C6	C5	C4	179.4°	180.0°
C6	N1	C2	N2	179.9°	180.0°
C6	N1	C2	N3	1.7°	0.0°
N1	C6	C5	N7	180.0°	179.8°
N1	C6	C5	C4	0.6°	0.0°
C2	N1	C6	C5	1.0°	0.0°
N1	C2	N2	N3	178.5°	179.9°
N1	C2	N3	C4	1.9°	0.1°
N1	C2	N3	H16	178.2°	180.0°
N1	C2	N2	H17	0.0°	179.9°
N1	C2	N2	H18	180.0°	0.0°
C6	C5	N7	C4	179.4°	179.8°
C6	C5	N7	C8	179.9°	179.8°
C6	C5	C4	N3	0.8°	0.0°
C6	C5	C4	N9	179.3°	180.0°
N2	C2	N3	C4	179.7°	180.0°
N2	C2	N3	H16	0.2°	0.0°
C2	N2	H17	H18	180.0°	179.9°
C2	N3	C4	C5	1.4°	0.0°
C2	N3	C4	H16	180.0°	180.0°
C2	N3	C4	N9	179.4°	180.0°
N3	C2	N2	H17	178.5°	0.0°
N3	C2	N2	H18	1.5°	180.0°
N7	C5	C4	N3	179.6°	179.8°
N7	C5	C4	N9	1.1°	0.1°
C5	N7	C8	N9	0.1°	0.1°
C5	N7	C8	H19	180.0°	179.9°
C4	C5	N7	C8	0.6°	0.0°
C5	C4	N3	N9	178.0°	179.9°
C5	C4	N9	C8	1.2°	0.2°
C5	C4	N9	C1'	179.6°	180.0°
C5	C4	N3	H16	178.6°	180.0°
N7	C8	N9	C4	0.8°	0.2°
N7	C8	N9	H19	180.0°	180.0°
N7	C8	N9	C1'	179.2°	180.0°
N3	C4	N9	C8	179.4°	179.7°
N3	C4	N9	C1'	2.1°	0.0°
C4	N9	C8	C1'	178.4°	179.7°
C4	N9	C1'	C2'	135.5°	85.0°
C4	N9	C1'	O4'	109.3°	160.9°
C4	N9	C1'	H15	12.5°	38.0°
N9	C4	N3	H16	0.6°	0.1°
C4	N9	C8	H19	179.2°	179.8°
C8	N9	C1'	C2'	46.3°	95.3°
C8	N9	C1'	O4'	68.9°	18.8°
C8	N9	C1'	H15	169.3°	141.7°
N9	C1'	C2'	O4'	116.9°	118.6°
N9	C1'	C2'	H15	123.4°	122.9°
N9	C1'	O4'	H15	121.3°	123.0°
N9	C1'	C2'	O2'	84.1°	86.2°
N9	C1'	C2'	C3'	152.1°	155.6°
N9	C1'	O4'	C4'	158.2°	158.4°
N9	C1'	C2'	H13	37.6°	37.4°
C1'	N9	C8	H19	0.8°	0.0°
C2'	C1'	O4'	H15	118.7°	118.5°
C1'	C2'	O2'	C3'	116.3°	112.6°
C1'	C2'	O2'	H13	121.0°	123.7°
C1'	C2'	C3'	H13	114.6°	118.2°
C2'	C1'	O4'	C4'	38.2°	39.9°
C1'	C2'	C3'	C4'	19.5°	20.9°
C1'	C2'	C3'	O3'	101.4°	97.8°
C1'	C2'	C3'	H11	135.6°	139.6°
C1'	C2'	O2'	H14	180.0°	174.1°
O4'	C1'	C2'	O2'	159.0°	155.1°
O4'	C1'	C2'	C3'	35.2°	37.0°
C1'	O4'	C4'	C3'	25.1°	26.4°
C1'	O4'	C4'	C5'	146.2°	145.9°
C1'	O4'	C4'	H10	94.2°	93.0°
O4'	C1'	C2'	H13	79.4°	81.2°
O2'	C2'	C3'	H13	123.4°	123.6°
O2'	C2'	C3'	C4'	141.4°	139.1°
O2'	C2'	C3'	O3'	20.5°	20.4°
O2'	C2'	C3'	H11	102.4°	102.2°
O2'	C2'	C1'	H15	39.3°	36.7°
C2'	C3'	C4'	O4'	2.1°	1.9°
C2'	C3'	C4'	O3'	122.8°	118.7°
C2'	C3'	C4'	H11	116.1°	118.8°
C2'	C3'	O3'	H11	122.3°	122.6°
C2'	C3'	C4'	C5'	119.8°	121.4°
C2'	C3'	C4'	H10	118.1°	117.5°
C2'	C3'	O3'	H12	180.0°	65.2°
C3'	C2'	O2'	H14	63.7°	61.5°
C3'	C2'	C1'	H15	84.5°	81.5°
O4'	C4'	C3'	C5'	117.7°	119.5°
O4'	C4'	C3'	H10	120.2°	119.5°
O4'	C4'	C3'	O3'	125.0°	120.6°
O4'	C4'	C5'	H10	120.5°	121.0°
O4'	C4'	C5'	O5'	164.2°	66.7°
O4'	C4'	C5'	H8	76.2°	53.3°
O4'	C4'	C5'	H9	44.5°	173.3°
O4'	C4'	C3'	H11	113.9°	116.9°
C4'	O4'	C1'	H15	80.5°	78.6°
C4'	C3'	O3'	H11	120.4°	122.6°
C3'	C4'	C5'	H10	122.0°	121.0°
C3'	C4'	C5'	O5'	78.3°	175.3°
C3'	C4'	C5'	H8	41.3°	64.7°
C3'	C4'	C5'	H9	162.1°	55.3°
C4'	C3'	O3'	H12	62.7°	180.0°
C4'	C3'	C2'	H13	95.2°	97.3°
O3'	C3'	C4'	C5'	117.3°	119.9°
O3'	C3'	C4'	H10	4.8°	1.1°
O3'	C3'	C2'	H13	143.9°	144.0°
C4'	C5'	O5'	H8	119.6°	120.1°
C4'	C5'	O5'	H9	119.6°	120.0°
C4'	C5'	O5'	P1	157.7°	180.0°
C4'	C5'	H8	H9	121.1°	120.0°
C5'	C4'	C3'	H11	3.7°	2.7°
C5'	O5'	P1	O2	36.4°	49.9°
C5'	O5'	P1	N4	80.3°	70.1°
C5'	O5'	P1	O3	164.8°	170.0°
O5'	C5'	H8	H9	121.1°	120.0°
O5'	C5'	C4'	H10	43.7°	54.3°
O5'	P1	O2	N4	113.2°	120.0°
O5'	P1	O2	O3	120.6°	120.0°
O5'	P1	N4	C1	43.6°	60.0°
O5'	P1	N4	O3	111.7°	120.0°
O5'	P1	N4	H6	164.9°	176.0°
O5'	P1	O3	H7	123.0°	59.9°
P1	O5'	C5'	H8	38.1°	59.9°
P1	O5'	C5'	H9	82.6°	60.0°
O2	P1	N4	C1	160.6°	180.0°
O2	P1	N4	O3	131.3°	120.0°
O2	P1	N4	H6	78.1°	56.0°
O2	P1	O3	H7	0.0°	180.0°
N4	C1	C3	H1	120.2°	119.9°
N4	C1	C3	H2	120.2°	120.0°
C1	N4	P1	H6	121.3°	124.0°
C1	N4	P1	O3	68.2°	60.0°
N4	C1	H1	H2	119.6°	120.0°
N4	C1	C3	H3	180.0°	60.0°
N4	C1	C3	H4	60.0°	60.0°
N4	C1	C3	H5	60.0°	180.0°
C3	C1	N4	P1	105.0°	135.0°
C3	C1	H1	H2	119.6°	120.0°
C1	C3	H3	H4	120.0°	120.0°
C1	C3	H3	H5	120.0°	120.0°
C1	C3	H4	H5	120.0°	120.0°
C3	C1	N4	H6	16.3°	101.0°
P1	N4	C1	H1	15.2°	15.0°
P1	N4	C1	H2	134.9°	105.0°
N4	P1	O3	H7	126.0°	60.0°
O3	P1	N4	H6	53.2°	64.0°
H1	C1	C3	H3	59.9°	60.0°
H1	C1	C3	H4	179.8°	180.0°
H1	C1	C3	H5	60.2°	60.0°
H1	C1	N4	H6	136.5°	139.0°
H2	C1	C3	H3	59.8°	180.0°
H2	C1	C3	H4	60.1°	60.0°
H2	C1	C3	H5	179.9°	60.0°
H2	C1	N4	H6	103.8°	19.0°
H3	C3	H4	H5	120.0°	119.9°
H8	C5'	C4'	H10	163.4°	174.3°
H9	C5'	C4'	H10	75.9°	65.7°
H10	C4'	C3'	H11	125.8°	123.7°
H11	C3'	O3'	H12	57.7°	57.4°
H11	C3'	C2'	H13	21.0°	21.4°
H13	C2'	O2'	H14	59.0°	62.2°
H13	C2'	C1'	H15	161.0°	160.3°

Release date:	2017-06-28
Definition date:	2016-06-28
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB
Derived from:	5KMA