6ZC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1' | N1' | doub | 1.22Å | 1.38Å | |
| O2' | N1' | sing | 1.22Å | 1.38Å | |
| N1' | C4' | sing | 1.48Å | 1.38Å | |
| C4' | C3' | doub | 1.38Å | 1.38Å | Aromatic |
| C4' | C5' | sing | 1.38Å | 1.37Å | Aromatic |
| C3' | C2' | sing | 1.38Å | 1.38Å | Aromatic |
| C5' | C6' | doub | 1.38Å | 1.37Å | Aromatic |
| C2' | C1' | doub | 1.39Å | 1.38Å | Aromatic |
| C6' | C1' | sing | 1.39Å | 1.39Å | Aromatic |
| C1' | O1 | sing | 1.36Å | 1.37Å | |
| C8 | C7 | sing | 1.51Å | 1.50Å | |
| O1 | C1 | sing | 1.43Å | 1.42Å | |
| O7 | C7 | doub | 1.21Å | 1.22Å | |
| C7 | N2 | sing | 1.35Å | 1.34Å | |
| C1 | O5 | sing | 1.43Å | 1.44Å | |
| C1 | C2 | sing | 1.53Å | 1.52Å | |
| N2 | C2 | sing | 1.46Å | 1.46Å | |
| O5 | C5 | sing | 1.43Å | 1.43Å | |
| C2 | C3 | sing | 1.53Å | 1.53Å | |
| C5 | C6 | sing | 1.53Å | 1.52Å | |
| C5 | C4 | sing | 1.53Å | 1.53Å | |
| C6 | O6 | sing | 1.43Å | 1.43Å | |
| C3 | C4 | sing | 1.53Å | 1.54Å | |
| C3 | O3 | sing | 1.43Å | 1.43Å | |
| C4 | O4 | sing | 1.43Å | 1.43Å | |
| C1 | H1 | sing | 1.09Å | 1.10Å | |
| C2 | H2 | sing | 1.09Å | 1.10Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H61 | sing | 1.09Å | 1.10Å | |
| C6 | H62 | sing | 1.09Å | 1.10Å | |
| N2 | HN21 | sing | 0.97Å | 1.00Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| O6 | HO6 | sing | 0.97Å | 0.95Å | |
| C3' | H11 | sing | 1.08Å | 1.08Å | |
| C2' | H12 | sing | 1.08Å | 1.08Å | |
| C5' | H13 | sing | 1.08Å | 1.08Å | |
| C6' | H14 | sing | 1.08Å | 1.08Å | |
| C8 | H15 | sing | 1.09Å | 1.10Å | |
| C8 | H16 | sing | 1.09Å | 1.10Å | |
| C8 | H17 | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1' | N1' | O2' | 123.6° | 120.0° |
| O1' | N1' | C4' | 116.9° | 120.0° |
| O2' | N1' | C4' | 119.5° | 120.0° |
| N1' | C4' | C3' | 120.2° | 119.9° |
| N1' | C4' | C5' | 116.5° | 119.9° |
| C3' | C4' | C5' | 123.3° | 120.2° |
| C4' | C3' | C2' | 118.3° | 120.0° |
| C4' | C3' | H11 | 120.8° | 120.0° |
| C4' | C5' | C6' | 118.2° | 120.0° |
| C4' | C5' | H13 | 120.9° | 120.0° |
| C3' | C2' | C1' | 118.8° | 119.9° |
| C2' | C3' | H11 | 120.8° | 120.0° |
| C3' | C2' | H12 | 120.6° | 120.0° |
| C5' | C6' | C1' | 119.5° | 120.0° |
| C6' | C5' | H13 | 120.9° | 120.0° |
| C5' | C6' | H14 | 120.3° | 120.0° |
| C2' | C1' | C6' | 121.9° | 119.9° |
| C2' | C1' | O1 | 119.5° | 120.0° |
| C1' | C2' | H12 | 120.6° | 120.1° |
| C6' | C1' | O1 | 118.6° | 120.1° |
| C1' | C6' | H14 | 120.2° | 120.0° |
| C1' | O1 | C1 | 115.6° | 117.0° |
| C8 | C7 | O7 | 120.3° | 120.0° |
| C8 | C7 | N2 | 116.5° | 120.0° |
| C7 | C8 | H15 | 109.5° | 109.5° |
| C7 | C8 | H16 | 109.5° | 109.5° |
| C7 | C8 | H17 | 109.5° | 109.5° |
| O1 | C1 | O5 | 109.0° | 109.4° |
| O1 | C1 | C2 | 111.2° | 109.5° |
| O1 | C1 | H1 | 109.1° | 109.5° |
| O7 | C7 | N2 | 123.2° | 120.0° |
| C7 | N2 | C2 | 121.5° | 120.0° |
| C7 | N2 | HN21 | 119.2° | 120.0° |
| O5 | C1 | C2 | 111.0° | 109.4° |
| C1 | O5 | C5 | 116.5° | 114.1° |
| O5 | C1 | H1 | 108.8° | 109.5° |
| C1 | C2 | N2 | 110.2° | 109.5° |
| C1 | C2 | C3 | 110.5° | 109.1° |
| C2 | C1 | H1 | 107.8° | 109.5° |
| C1 | C2 | H2 | 107.6° | 109.5° |
| N2 | C2 | C3 | 112.5° | 109.5° |
| N2 | C2 | H2 | 108.4° | 109.6° |
| C2 | N2 | HN21 | 119.3° | 120.0° |
| O5 | C5 | C6 | 107.0° | 109.5° |
| O5 | C5 | C4 | 109.3° | 109.4° |
| O5 | C5 | H5 | 109.2° | 109.4° |
| C2 | C3 | C4 | 110.2° | 109.1° |
| C2 | C3 | O3 | 108.6° | 109.5° |
| C3 | C2 | H2 | 107.5° | 109.5° |
| C2 | C3 | H3 | 108.9° | 109.5° |
| C6 | C5 | C4 | 115.1° | 109.5° |
| C5 | C6 | O6 | 109.4° | 109.5° |
| C6 | C5 | H5 | 108.0° | 109.5° |
| C5 | C6 | H61 | 109.5° | 109.5° |
| C5 | C6 | H62 | 109.5° | 109.5° |
| C5 | C4 | C3 | 110.4° | 109.2° |
| C5 | C4 | O4 | 105.8° | 109.5° |
| C5 | C4 | H4 | 109.6° | 109.6° |
| C4 | C5 | H5 | 108.0° | 109.5° |
| O6 | C6 | H61 | 109.5° | 109.5° |
| O6 | C6 | H62 | 109.5° | 109.4° |
| C6 | O6 | HO6 | 109.5° | 114.0° |
| C4 | C3 | O3 | 109.9° | 109.6° |
| C3 | C4 | O4 | 110.6° | 109.5° |
| C4 | C3 | H3 | 108.8° | 109.5° |
| C3 | C4 | H4 | 109.4° | 109.5° |
| O3 | C3 | H3 | 110.4° | 109.6° |
| C3 | O3 | HO3 | 109.5° | 114.0° |
| O4 | C4 | H4 | 111.0° | 109.5° |
| C4 | O4 | HO4 | 109.5° | 114.0° |
| H61 | C6 | H62 | 109.5° | 109.5° |
| H15 | C8 | H16 | 109.5° | 109.5° |
| H15 | C8 | H17 | 109.4° | 109.5° |
| H16 | C8 | H17 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1' | N1' | O2' | C4' | 177.3° | 179.9° |
| O1' | N1' | C4' | C3' | 60.3° | 0.0° |
| O1' | N1' | C4' | C5' | 118.9° | 179.8° |
| O2' | N1' | C4' | C3' | 122.3° | 180.0° |
| O2' | N1' | C4' | C5' | 58.6° | 0.3° |
| N1' | C4' | C3' | C5' | 179.1° | 179.7° |
| N1' | C4' | C3' | C2' | 179.3° | 180.0° |
| N1' | C4' | C5' | C6' | 179.3° | 180.0° |
| N1' | C4' | C3' | H11 | 0.7° | 0.1° |
| N1' | C4' | C5' | H13 | 0.7° | 0.0° |
| C4' | C3' | C2' | H11 | 180.0° | 180.0° |
| C3' | C4' | C5' | C6' | 0.2° | 0.3° |
| C4' | C3' | C2' | C1' | 0.1° | 0.0° |
| C4' | C3' | C2' | H12 | 179.9° | 180.0° |
| C3' | C4' | C5' | H13 | 179.8° | 179.7° |
| C5' | C4' | C3' | C2' | 0.2° | 0.3° |
| C4' | C5' | C6' | H13 | 180.0° | 180.0° |
| C4' | C5' | C6' | C1' | 0.0° | 0.1° |
| C5' | C4' | C3' | H11 | 179.8° | 179.8° |
| C4' | C5' | C6' | H14 | 180.0° | 179.9° |
| C3' | C2' | C1' | H12 | 180.0° | 180.0° |
| C3' | C2' | C1' | C6' | 0.3° | 0.2° |
| C3' | C2' | C1' | O1 | 179.8° | 180.0° |
| C5' | C6' | C1' | C2' | 0.2° | 0.2° |
| C5' | C6' | C1' | H14 | 180.0° | 179.9° |
| C5' | C6' | C1' | O1 | 179.8° | 180.0° |
| C2' | C1' | C6' | O1 | 179.5° | 179.8° |
| C2' | C1' | O1 | C1 | 144.4° | 180.0° |
| C1' | C2' | C3' | H11 | 179.9° | 180.0° |
| C2' | C1' | C6' | H14 | 179.8° | 179.7° |
| C6' | C1' | O1 | C1 | 35.2° | 0.2° |
| C6' | C1' | C2' | H12 | 179.7° | 179.8° |
| C1' | C6' | C5' | H13 | 180.0° | 179.9° |
| C1' | O1 | C1 | O5 | 85.5° | 70.1° |
| C1' | O1 | C1 | C2 | 151.9° | 170.0° |
| C1' | O1 | C1 | H1 | 33.1° | 50.0° |
| O1 | C1' | C2' | H12 | 0.2° | 0.1° |
| O1 | C1' | C6' | H14 | 0.2° | 0.1° |
| C8 | C7 | O7 | N2 | 180.0° | 180.0° |
| C8 | C7 | N2 | C2 | 178.9° | 180.0° |
| C8 | C7 | N2 | HN21 | 1.1° | 0.0° |
| C7 | C8 | H15 | H16 | 120.0° | 120.0° |
| C7 | C8 | H15 | H17 | 120.0° | 120.0° |
| C7 | C8 | H16 | H17 | 120.0° | 120.0° |
| O1 | C1 | O5 | C2 | 122.7° | 120.0° |
| O1 | C1 | O5 | H1 | 118.9° | 120.0° |
| O1 | C1 | C2 | H1 | 119.6° | 120.0° |
| O1 | C1 | C2 | N2 | 55.7° | 57.5° |
| O1 | C1 | O5 | C5 | 65.8° | 58.8° |
| O1 | C1 | C2 | C3 | 69.2° | 62.4° |
| O1 | C1 | C2 | H2 | 173.7° | 177.8° |
| O7 | C7 | N2 | C2 | 1.1° | 0.0° |
| O7 | C7 | N2 | HN21 | 178.9° | 180.0° |
| O7 | C7 | C8 | H15 | 0.0° | 90.0° |
| O7 | C7 | C8 | H16 | 120.0° | 150.0° |
| O7 | C7 | C8 | H17 | 120.0° | 30.0° |
| C7 | N2 | C2 | C1 | 94.5° | 85.0° |
| C7 | N2 | C2 | HN21 | 180.0° | 180.0° |
| C7 | N2 | C2 | C3 | 141.7° | 155.3° |
| C7 | N2 | C2 | H2 | 23.0° | 35.2° |
| N2 | C7 | C8 | H15 | 180.0° | 90.0° |
| N2 | C7 | C8 | H16 | 60.0° | 30.0° |
| N2 | C7 | C8 | H17 | 60.0° | 150.0° |
| O5 | C1 | C2 | H1 | 119.0° | 120.0° |
| O5 | C1 | C2 | N2 | 177.2° | 177.5° |
| O5 | C1 | C2 | C3 | 52.3° | 57.6° |
| C1 | O5 | C5 | C6 | 176.5° | 178.9° |
| C1 | O5 | C5 | C4 | 58.2° | 61.1° |
| O5 | C1 | C2 | H2 | 64.8° | 62.3° |
| C1 | O5 | C5 | H5 | 59.8° | 58.9° |
| C1 | C2 | N2 | C3 | 123.8° | 119.7° |
| C1 | C2 | N2 | H2 | 117.5° | 120.2° |
| C2 | C1 | O5 | C5 | 56.9° | 61.1° |
| C1 | C2 | C3 | H2 | 117.2° | 119.9° |
| C1 | C2 | C3 | C4 | 53.0° | 57.0° |
| C1 | C2 | C3 | O3 | 173.5° | 176.9° |
| C1 | C2 | C3 | H3 | 66.3° | 62.9° |
| C1 | C2 | N2 | HN21 | 85.5° | 95.0° |
| N2 | C2 | C3 | H2 | 119.2° | 120.2° |
| N2 | C2 | C3 | C4 | 176.6° | 176.9° |
| N2 | C2 | C3 | O3 | 62.9° | 63.2° |
| N2 | C2 | C1 | H1 | 63.8° | 62.5° |
| N2 | C2 | C3 | H3 | 57.3° | 57.0° |
| O5 | C5 | C6 | C4 | 121.7° | 120.0° |
| O5 | C5 | C6 | H5 | 117.5° | 120.0° |
| O5 | C5 | C4 | H5 | 118.7° | 120.0° |
| O5 | C5 | C6 | O6 | 58.7° | 65.0° |
| O5 | C5 | C4 | C3 | 55.7° | 57.6° |
| O5 | C5 | C4 | O4 | 175.4° | 177.5° |
| C5 | O5 | C1 | H1 | 175.3° | 178.9° |
| O5 | C5 | C4 | H4 | 64.9° | 62.3° |
| O5 | C5 | C6 | H61 | 61.3° | 175.0° |
| O5 | C5 | C6 | H62 | 178.7° | 54.9° |
| C2 | C3 | C4 | C5 | 55.1° | 57.0° |
| C2 | C3 | C4 | O3 | 119.7° | 119.9° |
| C2 | C3 | C4 | H3 | 119.4° | 119.9° |
| C2 | C3 | O3 | H3 | 119.4° | 120.2° |
| C2 | C3 | C4 | O4 | 171.9° | 176.9° |
| C3 | C2 | C1 | H1 | 171.3° | 177.6° |
| C2 | C3 | C4 | H4 | 65.6° | 63.0° |
| C3 | C2 | N2 | HN21 | 38.3° | 24.7° |
| C2 | C3 | O3 | HO3 | 180.0° | 180.0° |
| C6 | C5 | C4 | H5 | 120.8° | 120.0° |
| C5 | C6 | O6 | H61 | 120.0° | 120.1° |
| C5 | C6 | O6 | H62 | 120.0° | 120.0° |
| C6 | C5 | C4 | C3 | 176.1° | 177.6° |
| C6 | C5 | C4 | O4 | 64.1° | 62.5° |
| C6 | C5 | C4 | H4 | 55.6° | 57.7° |
| C5 | C6 | H61 | H62 | 120.1° | 120.0° |
| C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
| C4 | C5 | C6 | O6 | 63.0° | 175.0° |
| C5 | C4 | C3 | O4 | 116.8° | 119.9° |
| C5 | C4 | C3 | H4 | 120.7° | 120.0° |
| C5 | C4 | C3 | O3 | 174.7° | 176.9° |
| C5 | C4 | O4 | H4 | 118.8° | 120.2° |
| C5 | C4 | C3 | H3 | 64.3° | 62.9° |
| C4 | C5 | C6 | H61 | 177.0° | 55.0° |
| C4 | C5 | C6 | H62 | 57.0° | 65.1° |
| C5 | C4 | O4 | HO4 | 180.0° | 60.3° |
| O6 | C6 | C5 | H5 | 176.2° | 55.0° |
| O6 | C6 | H61 | H62 | 120.1° | 119.9° |
| C4 | C3 | O3 | H3 | 120.0° | 120.2° |
| C3 | C4 | O4 | H4 | 121.6° | 120.1° |
| C4 | C3 | C2 | H2 | 64.2° | 62.9° |
| C3 | C4 | C5 | H5 | 63.1° | 62.4° |
| C3 | C4 | O4 | HO4 | 60.4° | 180.0° |
| C4 | C3 | O3 | HO3 | 59.3° | 60.4° |
| O3 | C3 | C4 | O4 | 68.5° | 63.2° |
| O3 | C3 | C2 | H2 | 56.3° | 57.0° |
| O3 | C3 | C4 | H4 | 54.1° | 56.9° |
| O4 | C4 | C3 | H3 | 52.5° | 57.0° |
| O4 | C4 | C5 | H5 | 56.6° | 57.5° |
| H1 | C1 | C2 | H2 | 54.2° | 57.7° |
| H2 | C2 | C3 | H3 | 176.5° | 177.2° |
| H2 | C2 | N2 | HN21 | 157.0° | 144.9° |
| H3 | C3 | C4 | H4 | 175.0° | 177.1° |
| H3 | C3 | O3 | HO3 | 60.7° | 59.8° |
| H4 | C4 | C5 | H5 | 176.4° | 177.7° |
| H4 | C4 | O4 | HO4 | 61.2° | 59.9° |
| H5 | C5 | C6 | H61 | 56.2° | 65.0° |
| H5 | C5 | C6 | H62 | 63.8° | 174.9° |
| H61 | C6 | O6 | HO6 | 60.1° | 59.9° |
| H62 | C6 | O6 | HO6 | 60.0° | 60.1° |
| H11 | C3' | C2' | H12 | 0.1° | 0.1° |
| H13 | C5' | C6' | H14 | 0.0° | 0.0° |
| H15 | C8 | H16 | H17 | 120.0° | 120.0° |
