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Summary Geometry Related PDB entries

6YV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C09	C08	doub	1.39Å	1.38Å	Aromatic
C09	C10	sing	1.38Å	1.39Å	Aromatic
C08	C07	sing	1.38Å	1.39Å	Aromatic
C10	C11	doub	1.39Å	1.40Å	Aromatic
C07	C06	doub	1.40Å	1.41Å	Aromatic
C11	C06	sing	1.41Å	1.41Å	Aromatic
C11	B12	sing	1.57Å	1.56Å
C06	C05	sing	1.47Å	1.47Å
O13	B12	sing	1.42Å	1.36Å
B12	O14	sing	1.42Å	1.40Å
C05	C04	doub	1.35Å	1.26Å
C04	C02	sing	1.46Å	1.54Å
C02	O01	doub	1.22Å	1.24Å
C02	O03	sing	1.35Å	1.28Å
C10	H1	sing	1.08Å	1.08Å
O03	H2	sing	0.97Å	0.95Å
C04	H3	sing	1.08Å	1.08Å
C05	H4	sing	1.08Å	1.08Å
C07	H5	sing	1.08Å	1.08Å
C08	H6	sing	1.08Å	1.08Å
C09	H7	sing	1.08Å	1.08Å
O13	H8	sing	0.97Å	0.95Å
O14	H9	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C08	C09	C10	119.8°	120.4°
C09	C08	C07	119.9°	120.4°
C09	C08	H6	120.1°	119.7°
C08	C09	H7	120.1°	119.8°
C09	C10	C11	121.6°	120.0°
C09	C10	H1	119.2°	120.0°
C10	C09	H7	120.1°	119.8°
C08	C07	C06	121.1°	120.0°
C08	C07	H5	119.5°	120.0°
C07	C08	H6	120.0°	119.9°
C10	C11	C06	118.7°	119.6°
C10	C11	B12	119.3°	120.2°
C11	C10	H1	119.2°	120.0°
C07	C06	C11	118.9°	119.5°
C07	C06	C05	120.0°	120.3°
C06	C07	H5	119.4°	120.0°
C06	C11	B12	122.1°	120.2°
C11	C06	C05	121.1°	120.2°
C11	B12	O13	123.3°	120.0°
C11	B12	O14	112.1°	120.0°
C06	C05	C04	124.9°	120.0°
C06	C05	H4	117.5°	120.0°
O13	B12	O14	112.8°	120.0°
B12	O13	H8	109.5°	114.0°
B12	O14	H9	109.5°	114.0°
C05	C04	C02	123.8°	120.0°
C05	C04	H3	118.1°	120.0°
C04	C05	H4	117.5°	119.9°
C04	C02	O01	118.3°	120.0°
C04	C02	O03	116.7°	120.0°
C02	C04	H3	118.1°	120.0°
O01	C02	O03	124.9°	120.0°
C02	O03	H2	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C08	C09	C10	H7	180.0°	180.0°
C09	C08	C07	H6	180.0°	179.2°
C08	C09	C10	C11	0.6°	0.0°
C09	C08	C07	C06	0.0°	0.8°
C08	C09	C10	H1	179.5°	179.7°
C09	C08	C07	H5	180.0°	179.7°
C10	C09	C08	C07	0.2°	0.5°
C09	C10	C11	H1	180.0°	179.7°
C09	C10	C11	C06	0.7°	0.3°
C09	C10	C11	B12	178.6°	179.7°
C10	C09	C08	H6	179.8°	179.7°
C08	C07	C06	H5	180.0°	179.5°
C08	C07	C06	C11	0.2°	0.5°
C08	C07	C06	C05	179.5°	179.5°
C07	C08	C09	H7	179.8°	179.5°
C10	C11	C06	C07	0.5°	0.1°
C10	C11	C06	B12	179.3°	180.0°
C10	C11	C06	C05	179.1°	180.0°
C10	C11	B12	O13	14.2°	152.9°
C10	C11	B12	O14	125.9°	27.1°
C11	C10	C09	H7	179.4°	180.0°
C07	C06	C11	C05	179.6°	180.0°
C07	C06	C11	B12	178.8°	180.0°
C07	C06	C05	C04	52.6°	16.0°
C07	C06	C05	H4	127.5°	163.9°
C06	C07	C08	H6	180.0°	180.0°
C06	C11	B12	O13	166.5°	27.2°
C06	C11	B12	O14	53.4°	152.8°
C11	C06	C05	C04	127.8°	163.9°
C06	C11	C10	H1	179.3°	180.0°
C11	C06	C05	H4	52.2°	16.1°
C11	C06	C07	H5	179.8°	180.0°
B12	C11	C06	C05	1.6°	0.0°
C11	B12	O13	O14	139.9°	180.0°
B12	C11	C10	H1	1.4°	0.1°
C11	B12	O13	H8	180.0°	180.0°
C11	B12	O14	H9	180.0°	180.0°
C06	C05	C04	H4	180.0°	179.9°
C06	C05	C04	C02	177.7°	180.0°
C06	C05	C04	H3	2.3°	0.0°
C05	C06	C07	H5	0.6°	0.0°
O13	B12	O14	H9	35.6°	0.0°
O14	B12	O13	H8	40.1°	0.1°
C05	C04	C02	H3	180.0°	180.0°
C05	C04	C02	O01	159.8°	0.0°
C05	C04	C02	O03	18.0°	180.0°
C04	C02	O01	O03	177.6°	179.9°
C04	C02	O03	H2	177.6°	180.0°
C02	C04	C05	H4	2.2°	0.0°
O01	C02	O03	H2	0.0°	0.0°
O01	C02	C04	H3	20.2°	179.9°
O03	C02	C04	H3	162.0°	0.0°
H1	C10	C09	H7	0.5°	0.3°
H3	C04	C05	H4	177.8°	179.9°
H5	C07	C08	H6	0.0°	0.5°
H6	C08	C09	H7	0.2°	0.3°

222415

PDB entries from 2024-07-10

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