6YR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O4 | C4 | sing | 1.43Å | 1.42Å | |
| C4 | C3 | sing | 1.53Å | 1.52Å | |
| C4 | C5 | sing | 1.53Å | 1.51Å | |
| C3 | O3 | sing | 1.43Å | 1.39Å | |
| C3 | C2 | sing | 1.53Å | 1.54Å | |
| C2 | O2 | sing | 1.43Å | 1.39Å | |
| C2 | C1 | sing | 1.53Å | 1.52Å | |
| O2 | C7 | sing | 1.43Å | 1.40Å | |
| C5 | C6 | sing | 1.53Å | 1.51Å | |
| C5 | O5 | sing | 1.43Å | 1.43Å | |
| O5 | C1 | sing | 1.43Å | 1.40Å | |
| C1 | SE | sing | 1.96Å | 1.94Å | |
| SE | C8 | sing | 1.96Å | 1.89Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| C2 | H2 | sing | 1.09Å | 1.10Å | |
| C1 | H1 | sing | 1.09Å | 1.10Å | |
| C7 | H71C | sing | 1.09Å | 1.10Å | |
| C7 | H72C | sing | 1.09Å | 1.10Å | |
| C7 | H73C | sing | 1.09Å | 1.10Å | |
| C6 | H61 | sing | 1.09Å | 1.10Å | |
| C6 | H62 | sing | 1.09Å | 1.10Å | |
| C6 | H63 | sing | 1.09Å | 1.10Å | |
| C8 | H81C | sing | 1.09Å | 1.10Å | |
| C8 | H82C | sing | 1.09Å | 1.10Å | |
| C8 | H83C | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O4 | C4 | C3 | 107.3° | 109.5° |
| O4 | C4 | C5 | 110.7° | 109.5° |
| C4 | O4 | HO4 | 109.5° | 114.0° |
| O4 | C4 | H4 | 109.8° | 109.5° |
| C3 | C4 | C5 | 111.8° | 109.2° |
| C4 | C3 | O3 | 111.1° | 109.6° |
| C4 | C3 | C2 | 110.5° | 109.0° |
| C3 | C4 | H4 | 108.5° | 109.5° |
| C4 | C3 | H3 | 105.8° | 109.5° |
| C4 | C5 | C6 | 107.1° | 109.5° |
| C4 | C5 | O5 | 112.7° | 109.4° |
| C5 | C4 | H4 | 108.6° | 109.5° |
| C4 | C5 | H5 | 107.8° | 109.4° |
| O3 | C3 | C2 | 115.8° | 109.6° |
| O3 | C3 | H3 | 107.4° | 109.6° |
| C3 | O3 | HO3 | 109.5° | 114.0° |
| C3 | C2 | O2 | 105.3° | 109.6° |
| C3 | C2 | C1 | 110.2° | 109.2° |
| C2 | C3 | H3 | 105.6° | 109.6° |
| C3 | C2 | H2 | 108.4° | 109.5° |
| O2 | C2 | C1 | 113.7° | 109.5° |
| C2 | O2 | C7 | 116.8° | 114.0° |
| O2 | C2 | H2 | 110.5° | 109.5° |
| C2 | C1 | O5 | 109.4° | 109.5° |
| C2 | C1 | SE | 109.6° | 109.5° |
| C1 | C2 | H2 | 108.7° | 109.6° |
| C2 | C1 | H1 | 111.7° | 109.5° |
| O2 | C7 | H71C | 109.5° | 109.5° |
| O2 | C7 | H72C | 109.4° | 109.4° |
| O2 | C7 | H73C | 109.4° | 109.5° |
| C6 | C5 | O5 | 112.5° | 109.5° |
| C6 | C5 | H5 | 107.8° | 109.5° |
| C5 | C6 | H61 | 109.5° | 109.5° |
| C5 | C6 | H62 | 109.4° | 109.5° |
| C5 | C6 | H63 | 109.5° | 109.5° |
| C5 | O5 | C1 | 107.6° | 114.1° |
| O5 | C5 | H5 | 108.8° | 109.5° |
| O5 | C1 | SE | 105.4° | 109.5° |
| O5 | C1 | H1 | 113.7° | 109.5° |
| C1 | SE | C8 | 95.0° | 101.0° |
| SE | C1 | H1 | 106.8° | 109.5° |
| SE | C8 | H81C | 109.5° | 109.5° |
| SE | C8 | H82C | 109.5° | 109.5° |
| SE | C8 | H83C | 109.5° | 109.5° |
| H71C | C7 | H72C | 109.5° | 109.4° |
| H71C | C7 | H73C | 109.5° | 109.5° |
| H72C | C7 | H73C | 109.5° | 109.5° |
| H61 | C6 | H62 | 109.5° | 109.4° |
| H61 | C6 | H63 | 109.5° | 109.5° |
| H62 | C6 | H63 | 109.5° | 109.4° |
| H81C | C8 | H82C | 109.4° | 109.5° |
| H81C | C8 | H83C | 109.5° | 109.4° |
| H82C | C8 | H83C | 109.4° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O4 | C4 | C3 | C5 | 121.5° | 119.9° |
| O4 | C4 | C3 | H4 | 118.7° | 120.2° |
| O4 | C4 | C5 | H4 | 120.7° | 120.1° |
| O4 | C4 | C3 | O3 | 51.8° | 56.9° |
| O4 | C4 | C3 | C2 | 78.1° | 63.0° |
| O4 | C4 | C5 | C6 | 57.2° | 57.7° |
| O4 | C4 | C5 | O5 | 67.0° | 62.4° |
| O4 | C4 | C3 | H3 | 168.0° | 177.2° |
| O4 | C4 | C5 | H5 | 172.9° | 177.7° |
| C3 | C4 | C5 | H4 | 119.7° | 119.9° |
| C4 | C3 | O3 | C2 | 127.1° | 119.6° |
| C4 | C3 | O3 | H3 | 115.3° | 120.2° |
| C4 | C3 | C2 | H3 | 114.0° | 119.9° |
| C4 | C3 | C2 | O2 | 170.7° | 176.9° |
| C4 | C3 | C2 | C1 | 47.8° | 56.9° |
| C3 | C4 | C5 | C6 | 176.8° | 177.6° |
| C3 | C4 | C5 | O5 | 52.6° | 57.6° |
| C3 | C4 | O4 | HO4 | 180.0° | 179.9° |
| C3 | C4 | C5 | H5 | 67.5° | 62.4° |
| C4 | C3 | O3 | HO3 | 180.0° | 60.0° |
| C4 | C3 | C2 | H2 | 71.1° | 63.0° |
| C5 | C4 | C3 | O3 | 173.3° | 176.9° |
| C5 | C4 | C3 | C2 | 43.4° | 57.0° |
| C4 | C5 | C6 | O5 | 124.3° | 119.9° |
| C4 | C5 | C6 | H5 | 115.8° | 120.0° |
| C4 | C5 | O5 | H5 | 119.5° | 119.9° |
| C4 | C5 | O5 | C1 | 65.2° | 61.1° |
| C5 | C4 | O4 | HO4 | 57.8° | 60.3° |
| C5 | C4 | C3 | H3 | 70.5° | 62.9° |
| C4 | C5 | C6 | H61 | 180.0° | 60.1° |
| C4 | C5 | C6 | H62 | 60.0° | 180.0° |
| C4 | C5 | C6 | H63 | 60.0° | 60.0° |
| O3 | C3 | C2 | H3 | 118.6° | 120.2° |
| O3 | C3 | C2 | O2 | 62.0° | 63.2° |
| O3 | C3 | C2 | C1 | 175.1° | 176.8° |
| O3 | C3 | C4 | H4 | 66.9° | 63.2° |
| O3 | C3 | C2 | H2 | 56.3° | 56.9° |
| C3 | C2 | O2 | C1 | 120.7° | 119.7° |
| C3 | C2 | O2 | H2 | 116.8° | 120.1° |
| C3 | C2 | C1 | H2 | 118.6° | 119.9° |
| C3 | C2 | O2 | C7 | 131.4° | 95.2° |
| C3 | C2 | C1 | O5 | 61.6° | 57.6° |
| C3 | C2 | C1 | SE | 176.8° | 177.6° |
| C2 | C3 | C4 | H4 | 163.2° | 176.9° |
| C2 | C3 | O3 | HO3 | 52.9° | 179.6° |
| C3 | C2 | C1 | H1 | 65.1° | 62.4° |
| O2 | C2 | C1 | H2 | 123.5° | 120.2° |
| O2 | C2 | C1 | O5 | 179.5° | 177.5° |
| O2 | C2 | C1 | SE | 65.3° | 62.5° |
| O2 | C2 | C3 | H3 | 56.7° | 57.0° |
| O2 | C2 | C1 | H1 | 52.8° | 57.5° |
| C2 | O2 | C7 | H71C | 180.0° | 65.3° |
| C2 | O2 | C7 | H72C | 60.0° | 54.7° |
| C2 | O2 | C7 | H73C | 60.0° | 174.7° |
| C1 | C2 | O2 | C7 | 107.9° | 145.1° |
| C2 | C1 | O5 | C5 | 69.0° | 61.1° |
| C2 | C1 | O5 | SE | 117.8° | 120.0° |
| C2 | C1 | O5 | H1 | 125.5° | 120.0° |
| C2 | C1 | SE | H1 | 121.1° | 120.0° |
| C2 | C1 | SE | C8 | 133.4° | 180.0° |
| C1 | C2 | C3 | H3 | 66.3° | 62.9° |
| C7 | O2 | C2 | H2 | 14.5° | 24.9° |
| O2 | C7 | H71C | H72C | 120.0° | 120.0° |
| O2 | C7 | H71C | H73C | 120.0° | 120.0° |
| O2 | C7 | H72C | H73C | 119.9° | 120.0° |
| C6 | C5 | O5 | H5 | 119.3° | 120.1° |
| C6 | C5 | O5 | C1 | 173.6° | 178.9° |
| C6 | C5 | C4 | H4 | 63.5° | 62.5° |
| C5 | C6 | H61 | H62 | 120.0° | 120.0° |
| C5 | C6 | H61 | H63 | 120.0° | 120.1° |
| C5 | C6 | H62 | H63 | 120.0° | 120.0° |
| C5 | O5 | C1 | SE | 173.2° | 178.9° |
| O5 | C5 | C4 | H4 | 172.3° | 177.5° |
| C5 | O5 | C1 | H1 | 56.5° | 58.9° |
| O5 | C5 | C6 | H61 | 55.6° | 180.0° |
| O5 | C5 | C6 | H62 | 64.3° | 60.0° |
| O5 | C5 | C6 | H63 | 175.7° | 59.9° |
| O5 | C1 | SE | H1 | 121.3° | 120.0° |
| O5 | C1 | SE | C8 | 109.0° | 60.0° |
| C1 | O5 | C5 | H5 | 54.3° | 58.8° |
| O5 | C1 | C2 | H2 | 57.0° | 62.3° |
| SE | C1 | C2 | H2 | 58.1° | 57.7° |
| C1 | SE | C8 | H81C | 180.0° | 60.0° |
| C1 | SE | C8 | H82C | 60.0° | 60.0° |
| C1 | SE | C8 | H83C | 60.0° | 180.0° |
| C8 | SE | C1 | H1 | 12.3° | 60.0° |
| SE | C8 | H81C | H82C | 120.0° | 120.0° |
| SE | C8 | H81C | H83C | 120.0° | 120.0° |
| SE | C8 | H82C | H83C | 120.0° | 120.0° |
| HO4 | O4 | C4 | H4 | 62.2° | 59.8° |
| H4 | C4 | C3 | H3 | 49.3° | 57.0° |
| H4 | C4 | C5 | H5 | 52.2° | 57.6° |
| H3 | C3 | O3 | HO3 | 64.7° | 60.2° |
| H3 | C3 | C2 | H2 | 174.9° | 177.1° |
| H5 | C5 | C6 | H61 | 64.3° | 59.9° |
| H5 | C5 | C6 | H62 | 175.8° | 60.0° |
| H5 | C5 | C6 | H63 | 55.8° | 180.0° |
| H2 | C2 | C1 | H1 | 176.3° | 177.7° |
| H71C | C7 | H72C | H73C | 120.0° | 120.0° |
| H61 | C6 | H62 | H63 | 120.0° | 120.0° |
| H81C | C8 | H82C | H83C | 120.0° | 120.0° |
