6Y9
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CB | CG | sing | 1.55Å | 1.54Å | |
CB | CA | sing | 1.54Å | 1.54Å | |
C | O | doub | 1.21Å | 1.23Å | |
C | CA | sing | 1.51Å | 1.61Å | |
CG | CD | sing | 1.55Å | 1.51Å | |
CA | N | sing | 1.48Å | 1.48Å | |
CA | C38 | sing | 1.53Å | 1.54Å | |
N | CD | sing | 1.48Å | 1.46Å | |
N | C37 | sing | 1.47Å | 1.46Å | |
CD | HD2 | sing | 1.09Å | 1.10Å | |
CD | HD3 | sing | 1.09Å | 1.10Å | |
CG | HG2 | sing | 1.09Å | 1.10Å | |
CG | HG3 | sing | 1.09Å | 1.10Å | |
C37 | H5 | sing | 1.09Å | 1.10Å | |
C37 | H6 | sing | 1.09Å | 1.10Å | |
C37 | H7 | sing | 1.09Å | 1.10Å | |
CB | HB2 | sing | 1.09Å | 1.10Å | |
CB | HB3 | sing | 1.09Å | 1.10Å | |
C38 | H57 | sing | 1.09Å | 1.10Å | |
C38 | H58 | sing | 1.09Å | 1.10Å | |
C38 | H59 | sing | 1.09Å | 1.10Å | |
C | OXT | sing | 1.34Å | 1.34Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CG | CB | CA | 105.7° | 103.0° |
CB | CG | CD | 104.1° | 101.7° |
CB | CG | HG2 | 110.8° | 111.0° |
CB | CG | HG3 | 110.8° | 111.1° |
CG | CB | HB2 | 110.4° | 110.7° |
CG | CB | HB3 | 110.4° | 110.7° |
CB | CA | C | 110.2° | 110.0° |
CB | CA | N | 103.7° | 107.3° |
CB | CA | C38 | 111.7° | 109.9° |
CA | CB | HB2 | 110.4° | 110.7° |
CA | CB | HB3 | 110.4° | 110.7° |
O | C | CA | 120.1° | 120.0° |
O | C | OXT | 124.0° | 120.0° |
C | CA | N | 111.5° | 109.9° |
C | CA | C38 | 103.5° | 109.8° |
CA | C | OXT | 115.9° | 120.0° |
CG | CD | N | 102.6° | 104.9° |
CG | CD | HD2 | 111.1° | 110.4° |
CG | CD | HD3 | 111.1° | 110.4° |
CD | CG | HG2 | 110.8° | 111.0° |
CD | CG | HG3 | 110.8° | 111.0° |
N | CA | C38 | 116.4° | 109.9° |
CA | N | CD | 106.2° | 108.4° |
CA | N | C37 | 120.5° | 111.0° |
CA | C38 | H57 | 109.5° | 109.5° |
CA | C38 | H58 | 109.5° | 109.4° |
CA | C38 | H59 | 109.5° | 109.4° |
CD | N | C37 | 114.6° | 111.0° |
N | CD | HD2 | 111.2° | 110.4° |
N | CD | HD3 | 111.2° | 110.4° |
N | C37 | H5 | 109.5° | 109.4° |
N | C37 | H6 | 109.5° | 109.5° |
N | C37 | H7 | 109.4° | 109.4° |
HD2 | CD | HD3 | 109.5° | 110.4° |
HG2 | CG | HG3 | 109.4° | 110.8° |
H5 | C37 | H6 | 109.5° | 109.5° |
H5 | C37 | H7 | 109.5° | 109.5° |
H6 | C37 | H7 | 109.5° | 109.4° |
HB2 | CB | HB3 | 109.5° | 110.7° |
H57 | C38 | H58 | 109.5° | 109.5° |
H57 | C38 | H59 | 109.5° | 109.5° |
H58 | C38 | H59 | 109.4° | 109.5° |
C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CG | CB | CA | HB2 | 119.4° | 118.4° |
CG | CB | CA | HB3 | 119.4° | 118.4° |
CG | CB | CA | C | 129.9° | 97.2° |
CB | CG | CD | HG2 | 119.1° | 118.1° |
CB | CG | CD | HG3 | 119.2° | 118.2° |
CG | CB | CA | N | 10.5° | 22.2° |
CG | CB | CA | C38 | 115.6° | 141.7° |
CB | CG | CD | N | 35.1° | 37.1° |
CB | CG | CD | HD2 | 83.8° | 81.8° |
CB | CG | CD | HD3 | 154.0° | 156.0° |
CB | CG | HG2 | HG3 | 122.5° | 123.9° |
CG | CB | HB2 | HB3 | 121.8° | 123.2° |
CB | CA | C | O | 120.7° | 25.6° |
CB | CA | C | N | 114.5° | 117.9° |
CB | CA | C | C38 | 119.6° | 121.1° |
CA | CB | CG | CD | 14.9° | 35.6° |
CB | CA | N | C38 | 123.1° | 119.5° |
CB | CA | N | CD | 33.6° | 1.0° |
CB | CA | N | C37 | 165.9° | 123.3° |
CA | CB | CG | HG2 | 134.1° | 82.5° |
CA | CB | CG | HG3 | 104.3° | 153.8° |
CA | CB | HB2 | HB3 | 121.7° | 123.2° |
CB | CA | C38 | H57 | 180.0° | 179.3° |
CB | CA | C38 | H58 | 60.0° | 60.7° |
CB | CA | C38 | H59 | 60.0° | 59.3° |
CB | CA | C | OXT | 58.1° | 154.3° |
O | C | CA | OXT | 178.8° | 180.0° |
O | C | CA | N | 6.2° | 143.5° |
O | C | CA | C38 | 119.7° | 95.5° |
O | C | OXT | HXT | 0.0° | 0.0° |
C | CA | N | C38 | 118.4° | 121.0° |
C | CA | N | CD | 152.1° | 120.6° |
C | CA | N | C37 | 75.6° | 117.2° |
C | CA | CB | HB2 | 10.5° | 21.2° |
C | CA | CB | HB3 | 110.7° | 144.4° |
C | CA | C38 | H57 | 61.5° | 59.6° |
C | CA | C38 | H58 | 58.5° | 60.4° |
C | CA | C38 | H59 | 178.5° | 179.6° |
CA | C | OXT | HXT | 178.8° | 179.9° |
CG | CD | N | CA | 43.5° | 24.1° |
CG | CD | N | HD2 | 118.9° | 118.9° |
CG | CD | N | HD3 | 118.9° | 118.9° |
CG | CD | N | C37 | 179.0° | 146.4° |
CG | CD | HD2 | HD3 | 123.2° | 122.2° |
CD | CG | HG2 | HG3 | 122.5° | 123.8° |
CD | CG | CB | HB2 | 134.3° | 154.1° |
CD | CG | CB | HB3 | 104.5° | 82.7° |
CA | N | CD | C37 | 135.5° | 122.2° |
CA | N | CD | HD2 | 75.4° | 94.7° |
CA | N | CD | HD3 | 162.3° | 143.0° |
CA | N | C37 | H5 | 180.0° | 59.9° |
CA | N | C37 | H6 | 60.0° | 180.0° |
CA | N | C37 | H7 | 60.0° | 60.0° |
N | CA | CB | HB2 | 108.9° | 140.7° |
N | CA | CB | HB3 | 129.9° | 96.1° |
N | CA | C38 | H57 | 61.2° | 61.4° |
N | CA | C38 | H58 | 178.8° | 178.6° |
N | CA | C38 | H59 | 58.8° | 58.6° |
N | CA | C | OXT | 172.6° | 36.4° |
C38 | CA | N | CD | 89.5° | 118.4° |
C38 | CA | N | C37 | 42.8° | 3.8° |
C38 | CA | CB | HB2 | 125.0° | 99.9° |
C38 | CA | CB | HB3 | 3.8° | 23.3° |
CA | C38 | H57 | H58 | 120.0° | 119.9° |
CA | C38 | H57 | H59 | 120.0° | 120.0° |
CA | C38 | H58 | H59 | 120.0° | 120.0° |
C38 | CA | C | OXT | 61.5° | 84.6° |
N | CD | HD2 | HD3 | 123.2° | 122.3° |
N | CD | CG | HG2 | 154.3° | 81.0° |
N | CD | CG | HG3 | 84.0° | 155.3° |
CD | N | C37 | H5 | 51.3° | 60.8° |
CD | N | C37 | H6 | 171.3° | 59.3° |
CD | N | C37 | H7 | 68.7° | 179.3° |
C37 | N | CD | HD2 | 60.1° | 27.5° |
C37 | N | CD | HD3 | 62.1° | 94.8° |
N | C37 | H5 | H6 | 120.0° | 120.1° |
N | C37 | H5 | H7 | 120.0° | 119.9° |
N | C37 | H6 | H7 | 120.0° | 120.0° |
HD2 | CD | CG | HG2 | 35.4° | 160.1° |
HD2 | CD | CG | HG3 | 157.1° | 36.4° |
HD3 | CD | CG | HG2 | 86.8° | 37.9° |
HD3 | CD | CG | HG3 | 34.9° | 85.8° |
HG2 | CG | CB | HB2 | 106.5° | 36.0° |
HG2 | CG | CB | HB3 | 14.7° | 159.2° |
HG3 | CG | CB | HB2 | 15.1° | 87.8° |
HG3 | CG | CB | HB3 | 136.4° | 35.4° |
H5 | C37 | H6 | H7 | 120.0° | 120.0° |
H57 | C38 | H58 | H59 | 119.9° | 120.1° |