6VK
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C | C1 | sing | 1.53Å | 1.53Å | |
C7 | C1 | sing | 1.53Å | 1.53Å | |
C7 | C6 | sing | 1.51Å | 1.51Å | |
C1 | C2 | sing | 1.53Å | 1.51Å | |
C1 | C3 | sing | 1.54Å | 1.53Å | |
N | C6 | sing | 1.37Å | 1.38Å | |
N | C8 | sing | 1.40Å | 1.42Å | |
N1 | C8 | doub | 1.30Å | 1.34Å | Aromatic |
N1 | N2 | sing | 1.40Å | 1.42Å | Aromatic |
C6 | C5 | doub | 1.35Å | 1.36Å | |
C8 | C13 | sing | 1.41Å | 1.45Å | Aromatic |
C3 | C4 | sing | 1.50Å | 1.52Å | |
N2 | C9 | sing | 1.35Å | 1.44Å | Aromatic |
C5 | C4 | sing | 1.41Å | 1.48Å | |
C5 | C14 | sing | 1.51Å | 1.51Å | |
C13 | C9 | doub | 1.34Å | 1.47Å | Aromatic |
C13 | C14 | sing | 1.50Å | 1.48Å | |
C4 | O | doub | 1.22Å | 1.22Å | |
C21 | C20 | doub | 1.38Å | 1.39Å | Aromatic |
C21 | C16 | sing | 1.38Å | 1.40Å | Aromatic |
C9 | C10 | sing | 1.51Å | 1.48Å | |
C14 | C16 | sing | 1.51Å | 1.51Å | |
C14 | C15 | sing | 1.53Å | 1.52Å | |
C20 | C19 | sing | 1.38Å | 1.41Å | Aromatic |
C16 | C17 | doub | 1.38Å | 1.42Å | Aromatic |
C10 | C12 | sing | 1.53Å | 1.51Å | |
C10 | C11 | sing | 1.53Å | 1.50Å | |
C12 | C11 | sing | 1.53Å | 1.53Å | |
C19 | C18 | doub | 1.38Å | 1.37Å | Aromatic |
C17 | C18 | sing | 1.38Å | 1.40Å | Aromatic |
C7 | H1 | sing | 1.09Å | 1.10Å | |
C7 | H2 | sing | 1.09Å | 1.10Å | |
C2 | H3 | sing | 1.09Å | 1.10Å | |
C2 | H4 | sing | 1.09Å | 1.10Å | |
C2 | H5 | sing | 1.09Å | 1.10Å | |
C | H6 | sing | 1.09Å | 1.10Å | |
C | H7 | sing | 1.09Å | 1.10Å | |
C | H8 | sing | 1.09Å | 1.10Å | |
C3 | H9 | sing | 1.09Å | 1.10Å | |
C3 | H10 | sing | 1.09Å | 1.10Å | |
C15 | H11 | sing | 1.09Å | 1.10Å | |
C15 | H12 | sing | 1.09Å | 1.10Å | |
C15 | H13 | sing | 1.09Å | 1.10Å | |
C17 | H14 | sing | 1.08Å | 1.08Å | |
C18 | H15 | sing | 1.08Å | 1.08Å | |
C19 | H16 | sing | 1.08Å | 1.08Å | |
C20 | H17 | sing | 1.08Å | 1.08Å | |
C21 | H18 | sing | 1.08Å | 1.08Å | |
C10 | H19 | sing | 1.09Å | 1.10Å | |
C11 | H20 | sing | 1.09Å | 1.10Å | |
C11 | H21 | sing | 1.09Å | 1.10Å | |
C12 | H22 | sing | 1.09Å | 1.10Å | |
C12 | H23 | sing | 1.09Å | 1.10Å | |
N2 | H24 | sing | 0.97Å | 1.00Å | |
N | H25 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C | C1 | C7 | 107.4° | 109.7° |
C | C1 | C2 | 110.2° | 109.8° |
C | C1 | C3 | 111.8° | 110.0° |
C1 | C | H6 | 109.5° | 109.5° |
C1 | C | H7 | 109.5° | 109.4° |
C1 | C | H8 | 109.4° | 109.5° |
C1 | C7 | C6 | 114.7° | 109.7° |
C7 | C1 | C2 | 112.1° | 109.7° |
C7 | C1 | C3 | 106.4° | 108.0° |
C1 | C7 | H1 | 108.1° | 109.4° |
C1 | C7 | H2 | 108.2° | 109.5° |
C7 | C6 | N | 111.2° | 116.4° |
C7 | C6 | C5 | 121.2° | 120.6° |
C6 | C7 | H1 | 108.2° | 109.3° |
C6 | C7 | H2 | 108.2° | 109.6° |
C2 | C1 | C3 | 109.0° | 109.6° |
C1 | C2 | H3 | 109.5° | 109.5° |
C1 | C2 | H4 | 109.5° | 109.5° |
C1 | C2 | H5 | 109.5° | 109.5° |
C1 | C3 | C4 | 112.0° | 108.7° |
C1 | C3 | H9 | 108.9° | 109.6° |
C1 | C3 | H10 | 108.8° | 109.6° |
C6 | N | C8 | 115.1° | 118.5° |
N | C6 | C5 | 127.5° | 123.0° |
C6 | N | H25 | 122.5° | 120.7° |
N | C8 | N1 | 124.4° | 131.1° |
N | C8 | C13 | 119.4° | 120.6° |
C8 | N | H25 | 122.5° | 120.8° |
C8 | N1 | N2 | 105.5° | 108.0° |
N1 | C8 | C13 | 116.2° | 108.3° |
N1 | N2 | C9 | 109.2° | 108.1° |
N1 | N2 | H24 | 125.4° | 126.0° |
C6 | C5 | C4 | 118.7° | 120.8° |
C6 | C5 | C14 | 123.5° | 123.0° |
C8 | C13 | C9 | 101.0° | 107.9° |
C8 | C13 | C14 | 127.4° | 121.9° |
C3 | C4 | C5 | 120.1° | 121.7° |
C3 | C4 | O | 119.2° | 119.1° |
C4 | C3 | H9 | 108.9° | 109.9° |
C4 | C3 | H10 | 108.9° | 109.4° |
N2 | C9 | C13 | 108.0° | 107.7° |
N2 | C9 | C10 | 123.1° | 126.1° |
C9 | N2 | H24 | 125.4° | 125.9° |
C4 | C5 | C14 | 117.8° | 116.2° |
C5 | C4 | O | 120.6° | 119.2° |
C5 | C14 | C13 | 107.0° | 109.8° |
C5 | C14 | C16 | 112.9° | 109.4° |
C5 | C14 | C15 | 112.3° | 109.4° |
C9 | C13 | C14 | 131.5° | 130.2° |
C13 | C9 | C10 | 128.6° | 126.1° |
C13 | C14 | C16 | 107.8° | 109.4° |
C13 | C14 | C15 | 103.1° | 109.4° |
C20 | C21 | C16 | 120.4° | 120.0° |
C21 | C20 | C19 | 120.5° | 120.0° |
C21 | C20 | H17 | 119.7° | 120.0° |
C20 | C21 | H18 | 119.8° | 120.0° |
C21 | C16 | C14 | 116.7° | 120.0° |
C21 | C16 | C17 | 119.0° | 120.0° |
C16 | C21 | H18 | 119.8° | 120.0° |
C9 | C10 | C12 | 116.1° | 117.5° |
C9 | C10 | C11 | 125.0° | 117.5° |
C9 | C10 | H19 | 114.8° | 115.6° |
C16 | C14 | C15 | 112.9° | 109.4° |
C14 | C16 | C17 | 124.2° | 120.0° |
C14 | C15 | H11 | 109.5° | 109.4° |
C14 | C15 | H12 | 109.5° | 109.5° |
C14 | C15 | H13 | 109.5° | 109.5° |
C20 | C19 | C18 | 119.2° | 120.0° |
C20 | C19 | H16 | 120.4° | 120.0° |
C19 | C20 | H17 | 119.8° | 120.0° |
C16 | C17 | C18 | 119.6° | 120.0° |
C16 | C17 | H14 | 120.2° | 120.0° |
C12 | C10 | C11 | 61.2° | 60.0° |
C10 | C12 | C11 | 59.1° | 60.0° |
C12 | C10 | H19 | 114.2° | 117.5° |
C10 | C12 | H22 | 120.2° | 117.5° |
C10 | C12 | H23 | 120.2° | 117.5° |
C10 | C11 | C12 | 59.7° | 60.0° |
C11 | C10 | H19 | 114.4° | 117.5° |
C10 | C11 | H20 | 120.0° | 117.5° |
C10 | C11 | H21 | 120.0° | 117.5° |
C12 | C11 | H20 | 120.0° | 117.5° |
C12 | C11 | H21 | 120.0° | 117.5° |
C11 | C12 | H22 | 120.2° | 117.5° |
C11 | C12 | H23 | 120.2° | 117.5° |
C19 | C18 | C17 | 121.3° | 120.0° |
C19 | C18 | H15 | 119.4° | 120.0° |
C18 | C19 | H16 | 120.4° | 120.0° |
C18 | C17 | H14 | 120.2° | 120.0° |
C17 | C18 | H15 | 119.4° | 120.0° |
H1 | C7 | H2 | 109.4° | 109.4° |
H3 | C2 | H4 | 109.5° | 109.5° |
H3 | C2 | H5 | 109.4° | 109.5° |
H4 | C2 | H5 | 109.4° | 109.4° |
H6 | C | H7 | 109.5° | 109.4° |
H6 | C | H8 | 109.5° | 109.6° |
H7 | C | H8 | 109.5° | 109.5° |
H9 | C3 | H10 | 109.5° | 109.7° |
H11 | C15 | H12 | 109.5° | 109.5° |
H11 | C15 | H13 | 109.5° | 109.6° |
H12 | C15 | H13 | 109.4° | 109.5° |
H20 | C11 | H21 | 109.5° | 115.5° |
H22 | C12 | H23 | 109.4° | 115.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C | C1 | C7 | C2 | 121.2° | 120.6° |
C | C1 | C7 | C3 | 119.8° | 119.9° |
C | C1 | C7 | C6 | 174.2° | 60.8° |
C | C1 | C2 | C3 | 123.0° | 120.9° |
C | C1 | C3 | C4 | 172.0° | 62.9° |
C | C1 | C7 | H1 | 65.0° | 59.1° |
C | C1 | C7 | H2 | 53.5° | 178.9° |
C | C1 | C2 | H3 | 180.0° | 179.4° |
C | C1 | C2 | H4 | 60.0° | 59.4° |
C | C1 | C2 | H5 | 60.0° | 60.5° |
C1 | C | H6 | H7 | 120.0° | 119.9° |
C1 | C | H6 | H8 | 120.0° | 120.0° |
C1 | C | H7 | H8 | 120.0° | 120.0° |
C | C1 | C3 | H9 | 51.6° | 177.0° |
C | C1 | C3 | H10 | 67.6° | 56.7° |
C1 | C7 | C6 | H1 | 120.8° | 119.9° |
C1 | C7 | C6 | H2 | 120.8° | 120.2° |
C7 | C1 | C2 | C3 | 117.4° | 118.5° |
C1 | C7 | C6 | N | 155.1° | 148.1° |
C1 | C7 | C6 | C5 | 26.1° | 31.7° |
C7 | C1 | C3 | C4 | 55.0° | 56.9° |
C1 | C7 | H1 | H2 | 117.6° | 119.9° |
C7 | C1 | C2 | H3 | 60.4° | 60.0° |
C7 | C1 | C2 | H4 | 179.6° | 180.0° |
C7 | C1 | C2 | H5 | 59.6° | 60.1° |
C7 | C1 | C | H6 | 180.0° | 60.0° |
C7 | C1 | C | H7 | 60.0° | 180.0° |
C7 | C1 | C | H8 | 60.0° | 60.0° |
C7 | C1 | C3 | H9 | 65.4° | 63.2° |
C7 | C1 | C3 | H10 | 175.4° | 176.4° |
C6 | C7 | C1 | C2 | 64.6° | 178.6° |
C6 | C7 | C1 | C3 | 54.4° | 59.1° |
C7 | C6 | N | C5 | 178.7° | 179.8° |
C7 | C6 | N | C8 | 178.3° | 166.1° |
C7 | C6 | C5 | C4 | 3.6° | 1.0° |
C7 | C6 | C5 | C14 | 179.4° | 178.4° |
C6 | C7 | H1 | H2 | 117.6° | 120.0° |
C7 | C6 | N | H25 | 1.7° | 13.9° |
C2 | C1 | C3 | C4 | 66.0° | 176.4° |
C2 | C1 | C7 | H1 | 56.2° | 61.5° |
C2 | C1 | C7 | H2 | 174.6° | 58.3° |
C1 | C2 | H3 | H4 | 120.0° | 120.0° |
C1 | C2 | H3 | H5 | 120.0° | 120.0° |
C1 | C2 | H4 | H5 | 120.0° | 119.9° |
C2 | C1 | C | H6 | 57.6° | 60.5° |
C2 | C1 | C | H7 | 177.6° | 59.4° |
C2 | C1 | C | H8 | 62.4° | 179.4° |
C2 | C1 | C3 | H9 | 173.6° | 56.3° |
C2 | C1 | C3 | H10 | 54.3° | 64.1° |
C1 | C3 | C4 | H9 | 120.4° | 119.9° |
C1 | C3 | C4 | H10 | 120.4° | 119.6° |
C1 | C3 | C4 | C5 | 29.9° | 28.3° |
C1 | C3 | C4 | O | 154.6° | 151.9° |
C3 | C1 | C7 | H1 | 175.2° | 179.0° |
C3 | C1 | C7 | H2 | 66.4° | 61.2° |
C3 | C1 | C2 | H3 | 57.1° | 58.5° |
C3 | C1 | C2 | H4 | 63.0° | 61.5° |
C3 | C1 | C2 | H5 | 177.1° | 178.6° |
C3 | C1 | C | H6 | 63.7° | 178.8° |
C3 | C1 | C | H7 | 56.3° | 61.3° |
C3 | C1 | C | H8 | 176.3° | 58.7° |
C1 | C3 | H9 | H10 | 118.8° | 120.3° |
C6 | N | C8 | H25 | 180.0° | 180.0° |
C6 | N | C8 | N1 | 177.5° | 165.6° |
C6 | N | C8 | C13 | 1.0° | 14.2° |
N | C6 | C5 | C4 | 175.0° | 178.7° |
N | C6 | C5 | C14 | 2.1° | 1.8° |
N | C6 | C7 | H1 | 34.4° | 28.1° |
N | C6 | C7 | H2 | 84.1° | 91.7° |
N | C8 | N1 | C13 | 178.5° | 179.8° |
N | C8 | N1 | N2 | 179.8° | 179.7° |
C8 | N | C6 | C5 | 3.0° | 13.7° |
N | C8 | C13 | C9 | 179.5° | 179.8° |
N | C8 | C13 | C14 | 2.0° | 0.3° |
C8 | N1 | N2 | C9 | 0.0° | 0.1° |
N1 | C8 | C13 | C9 | 2.0° | 0.1° |
N1 | C8 | C13 | C14 | 179.5° | 179.8° |
C8 | N1 | N2 | H24 | 180.0° | 180.0° |
N1 | C8 | N | H25 | 2.5° | 14.4° |
N2 | N1 | C8 | C13 | 1.3° | 0.1° |
N1 | N2 | C9 | H24 | 180.0° | 179.9° |
N1 | N2 | C9 | C13 | 1.2° | 0.0° |
N1 | N2 | C9 | C10 | 176.7° | 180.0° |
C6 | C5 | C4 | C3 | 1.5° | 0.6° |
C6 | C5 | C4 | C14 | 177.2° | 179.5° |
C6 | C5 | C14 | C13 | 0.8° | 14.8° |
C6 | C5 | C4 | O | 174.0° | 179.2° |
C6 | C5 | C14 | C16 | 119.3° | 105.3° |
C6 | C5 | C14 | C15 | 111.6° | 134.8° |
C5 | C6 | C7 | H1 | 146.8° | 151.6° |
C5 | C6 | C7 | H2 | 94.7° | 88.5° |
C5 | C6 | N | H25 | 177.0° | 166.3° |
C8 | C13 | C9 | N2 | 1.8° | 0.0° |
C8 | C13 | C14 | C5 | 2.7° | 13.7° |
C8 | C13 | C9 | C14 | 177.3° | 179.9° |
C8 | C13 | C9 | C10 | 177.0° | 180.0° |
C8 | C13 | C14 | C16 | 124.4° | 106.4° |
C8 | C13 | C14 | C15 | 115.9° | 133.8° |
C13 | C8 | N | H25 | 179.0° | 165.8° |
C3 | C4 | C5 | O | 175.5° | 179.8° |
C3 | C4 | C5 | C14 | 178.7° | 179.9° |
C4 | C3 | H9 | H10 | 118.9° | 120.3° |
N2 | C9 | C13 | C10 | 175.2° | 180.0° |
N2 | C9 | C13 | C14 | 179.1° | 179.8° |
N2 | C9 | C10 | C12 | 5.2° | 53.6° |
N2 | C9 | C10 | C11 | 66.6° | 15.0° |
N2 | C9 | C10 | H19 | 142.0° | 160.6° |
C4 | C5 | C14 | C13 | 177.9° | 165.8° |
C4 | C5 | C14 | C16 | 63.6° | 74.2° |
C4 | C5 | C14 | C15 | 65.5° | 45.7° |
C5 | C4 | C3 | H9 | 90.5° | 91.6° |
C5 | C4 | C3 | H10 | 150.2° | 148.0° |
C5 | C14 | C13 | C9 | 179.4° | 166.4° |
C5 | C14 | C13 | C16 | 121.7° | 120.1° |
C5 | C14 | C13 | C15 | 118.6° | 120.1° |
C14 | C5 | C4 | O | 3.2° | 0.3° |
C5 | C14 | C16 | C21 | 56.0° | 125.9° |
C5 | C14 | C16 | C15 | 128.8° | 119.9° |
C5 | C14 | C16 | C17 | 127.7° | 54.4° |
C5 | C14 | C15 | H11 | 180.0° | 62.4° |
C5 | C14 | C15 | H12 | 60.0° | 177.7° |
C5 | C14 | C15 | H13 | 60.0° | 57.7° |
C9 | C13 | C14 | C16 | 58.9° | 73.5° |
C9 | C13 | C14 | C15 | 60.8° | 46.3° |
C13 | C9 | C10 | C12 | 169.4° | 126.4° |
C13 | C9 | C10 | C11 | 118.9° | 165.0° |
C13 | C9 | C10 | H19 | 32.6° | 19.4° |
C13 | C9 | N2 | H24 | 178.8° | 179.9° |
C13 | C14 | C16 | C21 | 62.0° | 113.7° |
C14 | C13 | C9 | C10 | 5.7° | 0.2° |
C13 | C14 | C16 | C15 | 113.2° | 119.8° |
C13 | C14 | C16 | C17 | 114.3° | 66.0° |
C13 | C14 | C15 | H11 | 65.1° | 177.3° |
C13 | C14 | C15 | H12 | 54.9° | 57.4° |
C13 | C14 | C15 | H13 | 174.8° | 62.6° |
O | C4 | C3 | H9 | 85.0° | 88.2° |
O | C4 | C3 | H10 | 34.2° | 32.3° |
C20 | C21 | C16 | H18 | 180.0° | 179.4° |
C20 | C21 | C16 | C14 | 177.2° | 179.7° |
C21 | C20 | C19 | H17 | 180.0° | 179.8° |
C20 | C21 | C16 | C17 | 0.7° | 0.6° |
C21 | C20 | C19 | C18 | 0.9° | 0.3° |
C21 | C20 | C19 | H16 | 179.1° | 179.8° |
C21 | C16 | C14 | C17 | 176.3° | 179.7° |
C21 | C16 | C14 | C15 | 175.2° | 6.0° |
C16 | C21 | C20 | C19 | 0.1° | 0.6° |
C21 | C16 | C17 | C18 | 0.3° | 0.3° |
C21 | C16 | C17 | H14 | 179.7° | 179.7° |
C16 | C21 | C20 | H17 | 179.9° | 179.7° |
C9 | C10 | C12 | C11 | 117.3° | 107.5° |
C9 | C10 | C12 | H19 | 137.1° | 145.1° |
C9 | C10 | C11 | H19 | 151.6° | 145.0° |
C9 | C10 | C11 | H20 | 6.3° | 0.0° |
C9 | C10 | C11 | H21 | 147.5° | 145.0° |
C9 | C10 | C12 | H22 | 133.4° | 145.1° |
C9 | C10 | C12 | H23 | 8.1° | 0.0° |
C10 | C9 | N2 | H24 | 3.3° | 0.1° |
C14 | C16 | C17 | C18 | 176.5° | 180.0° |
C16 | C14 | C15 | H11 | 50.9° | 57.5° |
C16 | C14 | C15 | H12 | 171.0° | 62.4° |
C16 | C14 | C15 | H13 | 69.1° | 177.6° |
C14 | C16 | C17 | H14 | 3.5° | 0.0° |
C14 | C16 | C21 | H18 | 2.8° | 0.3° |
C15 | C14 | C16 | C17 | 1.1° | 174.2° |
C14 | C15 | H11 | H12 | 120.0° | 120.0° |
C14 | C15 | H11 | H13 | 120.0° | 120.0° |
C14 | C15 | H12 | H13 | 120.0° | 120.0° |
C20 | C19 | C18 | H16 | 180.0° | 179.9° |
C20 | C19 | C18 | C17 | 1.3° | 0.0° |
C20 | C19 | C18 | H15 | 178.7° | 180.0° |
C19 | C20 | C21 | H18 | 179.9° | 180.0° |
C16 | C17 | C18 | C19 | 0.7° | 0.0° |
C16 | C17 | C18 | H14 | 180.0° | 180.0° |
C16 | C17 | C18 | H15 | 179.3° | 180.0° |
C17 | C16 | C21 | H18 | 179.3° | 180.0° |
C12 | C10 | C11 | H19 | 105.3° | 107.5° |
C10 | C12 | C11 | H22 | 109.2° | 107.6° |
C10 | C12 | C11 | H23 | 109.2° | 107.5° |
C12 | C10 | C11 | H20 | 109.4° | 107.5° |
C12 | C10 | C11 | H21 | 109.4° | 107.5° |
C10 | C12 | H22 | H23 | 145.2° | 145.7° |
C10 | C11 | H20 | H21 | 144.9° | 145.7° |
C12 | C11 | H20 | H21 | 144.9° | 145.8° |
C11 | C12 | H22 | H23 | 145.2° | 145.6° |
C19 | C18 | C17 | H15 | 180.0° | 180.0° |
C19 | C18 | C17 | H14 | 179.3° | 180.0° |
C18 | C19 | C20 | H17 | 179.1° | 179.9° |
C17 | C18 | C19 | H16 | 178.7° | 179.9° |
H3 | C2 | H4 | H5 | 120.0° | 120.0° |
H6 | C | H7 | H8 | 120.0° | 120.1° |
H11 | C15 | H12 | H13 | 120.0° | 120.1° |
H14 | C17 | C18 | H15 | 0.8° | 0.0° |
H15 | C18 | C19 | H16 | 1.3° | 0.1° |
H16 | C19 | C20 | H17 | 0.9° | 0.0° |
H17 | C20 | C21 | H18 | 0.1° | 0.3° |
H19 | C10 | C11 | H20 | 145.3° | 145.0° |
H19 | C10 | C11 | H21 | 4.1° | 0.0° |
H19 | C10 | C12 | H22 | 3.6° | 0.0° |
H19 | C10 | C12 | H23 | 145.1° | 145.0° |
H20 | C11 | C12 | H22 | 141.4° | 145.0° |
H20 | C11 | C12 | H23 | 0.2° | 0.1° |
H21 | C11 | C12 | H22 | 0.2° | 0.1° |
H21 | C11 | C12 | H23 | 141.4° | 145.0° |