6UT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O6	C6	doub	1.22Å	1.36Å
N1	C6	sing	1.35Å	1.36Å
N1	C2	sing	1.36Å	1.36Å
C6	C5	sing	1.42Å	1.47Å
N2	C2	sing	1.37Å	1.35Å
C2	N3	doub	1.31Å	1.35Å
C5	N7	sing	1.35Å	1.35Å	Aromatic
C5	C4	doub	1.40Å	1.46Å	Aromatic
N7	C8	doub	1.30Å	1.36Å	Aromatic
N3	C4	sing	1.34Å	1.35Å
C4	N9	sing	1.37Å	1.32Å	Aromatic
C8	N9	sing	1.36Å	1.35Å	Aromatic
N9	C1'	sing	1.46Å	1.46Å
C1'	C2'	sing	1.55Å	1.52Å
C1'	O4'	sing	1.44Å	1.41Å
O2'	C2'	sing	1.43Å	1.44Å
C2'	C3'	sing	1.55Å	1.52Å
O4'	C4'	sing	1.44Å	1.42Å
C3'	C4'	sing	1.54Å	1.53Å
C3'	O3'	sing	1.43Å	1.44Å
C4'	C5'	sing	1.53Å	1.52Å
C5'	O5'	sing	1.43Å	1.42Å
C11	N18	sing	1.47Å	1.45Å
O19	C17	doub	1.21Å	1.22Å
C17	N18	sing	1.35Å	1.33Å
C17	C1	sing	1.51Å	1.50Å
O5'	P1	sing	1.61Å	1.61Å
O2	P1	doub	1.48Å	1.51Å
P1	N4	sing	1.68Å	1.75Å
P1	O3	sing	1.61Å	1.52Å
N4	C1	sing	1.47Å	1.45Å
C1	C3	sing	1.53Å	1.51Å
C12	N11	sing	1.37Å	1.37Å	Aromatic
C12	C7	doub	1.34Å	1.39Å	Aromatic
C3	C7	sing	1.51Å	1.51Å
N11	C10	sing	1.38Å	1.36Å	Aromatic
C7	C9	sing	1.46Å	1.47Å	Aromatic
C10	C9	doub	1.41Å	1.47Å	Aromatic
C10	C16	sing	1.39Å	1.39Å	Aromatic
C9	C13	sing	1.40Å	1.39Å	Aromatic
C16	C15	doub	1.38Å	1.39Å	Aromatic
C13	C14	doub	1.37Å	1.39Å	Aromatic
C15	C14	sing	1.39Å	1.40Å	Aromatic
O3	H1	sing	0.97Å	0.95Å
C1	H2	sing	1.09Å	1.10Å
N2	H3	sing	0.97Å	1.00Å
N2	H4	sing	0.97Å	1.00Å
N1	H5	sing	0.97Å	1.00Å
N4	H6	sing	1.01Å	1.00Å
C3	H7	sing	1.09Å	1.10Å
C3	H8	sing	1.09Å	1.10Å
N18	H9	sing	0.97Å	1.00Å
C12	H10	sing	1.08Å	1.08Å
N11	H11	sing	0.97Å	1.00Å
C16	H12	sing	1.08Å	1.08Å
C15	H13	sing	1.08Å	1.08Å
C14	H14	sing	1.08Å	1.08Å
C13	H15	sing	1.08Å	1.08Å
C5'	H16	sing	1.09Å	1.10Å
C5'	H17	sing	1.09Å	1.10Å
C4'	H18	sing	1.09Å	1.10Å
C3'	H19	sing	1.09Å	1.10Å
O3'	H20	sing	0.97Å	0.95Å
C2'	H21	sing	1.09Å	1.10Å
O2'	H22	sing	0.97Å	0.95Å
C1'	H23	sing	1.09Å	1.10Å
C8	H24	sing	1.08Å	1.08Å
C11	H25	sing	1.09Å	1.10Å
C11	H26	sing	1.09Å	1.10Å
C11	H27	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O6	C6	N1	122.3°	120.8°
O6	C6	C5	119.5°	120.8°
C6	N1	C2	122.2°	120.3°
N1	C6	C5	118.2°	118.3°
C6	N1	H5	118.9°	119.9°
N1	C2	N2	118.8°	119.0°
N1	C2	N3	122.4°	121.9°
C2	N1	H5	118.9°	119.8°
C6	C5	N7	136.2°	134.2°
C6	C5	C4	116.6°	118.6°
N2	C2	N3	118.8°	119.0°
C2	N2	H3	120.0°	120.0°
C2	N2	H4	120.0°	120.0°
C2	N3	C4	120.4°	121.1°
N7	C5	C4	107.2°	107.3°
C5	N7	C8	107.2°	109.4°
C5	C4	N3	120.2°	119.7°
C5	C4	N9	105.5°	106.1°
N7	C8	N9	110.0°	109.8°
N7	C8	H24	125.0°	125.1°
N3	C4	N9	134.3°	134.2°
C4	N9	C8	110.1°	107.5°
C4	N9	C1'	122.4°	126.2°
C8	N9	C1'	127.4°	126.3°
N9	C8	H24	125.0°	125.0°
N9	C1'	C2'	111.8°	110.7°
N9	C1'	O4'	107.3°	110.7°
N9	C1'	H23	110.8°	110.7°
C2'	C1'	O4'	105.3°	103.5°
C1'	C2'	O2'	112.6°	111.0°
C1'	C2'	C3'	102.5°	102.1°
C1'	C2'	H21	108.6°	110.8°
C2'	C1'	H23	110.0°	110.6°
C1'	O4'	C4'	107.5°	107.0°
O4'	C1'	H23	111.6°	110.6°
O2'	C2'	C3'	114.4°	111.0°
O2'	C2'	H21	109.8°	110.8°
C2'	O2'	H22	109.5°	114.0°
C2'	C3'	C4'	104.8°	104.2°
C2'	C3'	O3'	112.5°	110.4°
C2'	C3'	H19	108.9°	110.6°
C3'	C2'	H21	108.6°	110.9°
O4'	C4'	C3'	106.9°	107.4°
O4'	C4'	C5'	106.0°	109.9°
O4'	C4'	H18	111.3°	109.9°
C4'	C3'	O3'	111.6°	110.5°
C3'	C4'	C5'	112.9°	109.9°
C3'	C4'	H18	109.8°	109.8°
C4'	C3'	H19	108.8°	110.5°
O3'	C3'	H19	110.1°	110.5°
C3'	O3'	H20	109.5°	114.0°
C4'	C5'	O5'	108.1°	109.5°
C4'	C5'	H16	109.8°	109.5°
C4'	C5'	H17	109.8°	109.5°
C5'	C4'	H18	109.9°	109.9°
C5'	O5'	P1	120.6°	123.0°
O5'	C5'	H16	109.8°	109.5°
O5'	C5'	H17	109.8°	109.5°
C11	N18	C17	121.0°	120.0°
C11	N18	H9	119.5°	119.9°
N18	C11	H25	109.5°	109.5°
N18	C11	H26	109.5°	109.4°
N18	C11	H27	109.5°	109.5°
O19	C17	N18	122.5°	120.0°
O19	C17	C1	121.0°	120.0°
N18	C17	C1	116.5°	120.0°
C17	N18	H9	119.5°	120.1°
C17	C1	N4	113.3°	109.5°
C17	C1	C3	106.9°	109.5°
C17	C1	H2	109.8°	109.5°
O5'	P1	O2	109.3°	109.5°
O5'	P1	N4	103.6°	109.5°
O5'	P1	O3	103.3°	109.5°
O2	P1	N4	106.7°	109.5°
O2	P1	O3	119.7°	109.4°
N4	P1	O3	113.0°	109.5°
P1	N4	C1	122.6°	111.0°
P1	N4	H6	106.1°	111.0°
P1	O3	H1	109.5°	114.0°
N4	C1	C3	106.6°	109.4°
N4	C1	H2	110.5°	109.5°
C1	N4	H6	106.1°	111.0°
C1	C3	C7	113.6°	109.5°
C3	C1	H2	109.7°	109.5°
C1	C3	H7	108.4°	109.5°
C1	C3	H8	108.4°	109.4°
N11	C12	C7	110.8°	109.9°
C12	N11	C10	110.9°	109.8°
N11	C12	H10	124.6°	125.0°
C12	N11	H11	124.5°	125.1°
C12	C7	C3	129.2°	126.5°
C12	C7	C9	105.4°	107.0°
C7	C12	H10	124.6°	125.1°
C3	C7	C9	125.4°	126.5°
C7	C3	H7	108.4°	109.5°
C7	C3	H8	108.4°	109.5°
N11	C10	C9	107.1°	107.2°
N11	C10	C16	135.1°	133.5°
C10	N11	H11	124.6°	125.1°
C7	C9	C10	105.7°	106.0°
C7	C9	C13	132.0°	134.0°
C9	C10	C16	117.8°	119.3°
C10	C9	C13	122.3°	119.9°
C10	C16	C15	119.2°	119.8°
C10	C16	H12	120.4°	120.1°
C9	C13	C14	117.5°	119.8°
C9	C13	H15	121.2°	120.1°
C16	C15	C14	122.2°	120.6°
C15	C16	H12	120.4°	120.1°
C16	C15	H13	118.9°	119.7°
C13	C14	C15	121.0°	120.6°
C13	C14	H14	119.5°	119.7°
C14	C13	H15	121.3°	120.1°
C14	C15	H13	118.9°	119.6°
C15	C14	H14	119.5°	119.7°
H3	N2	H4	120.0°	120.0°
H7	C3	H8	109.5°	109.4°
H16	C5'	H17	109.4°	109.5°
H25	C11	H26	109.4°	109.5°
H25	C11	H27	109.5°	109.5°
H26	C11	H27	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O6	C6	N1	C5	179.5°	180.0°
O6	C6	N1	C2	180.0°	180.0°
O6	C6	C5	N7	0.7°	0.0°
O6	C6	C5	C4	179.7°	180.0°
O6	C6	N1	H5	0.0°	0.0°
C6	N1	C2	H5	180.0°	180.0°
C6	N1	C2	N2	179.8°	180.0°
C6	N1	C2	N3	0.7°	0.1°
N1	C6	C5	N7	179.8°	180.0°
N1	C6	C5	C4	0.2°	0.0°
C2	N1	C6	C5	0.5°	0.0°
N1	C2	N2	N3	179.6°	179.9°
N1	C2	N3	C4	0.5°	0.1°
N1	C2	N2	H3	179.6°	180.0°
N1	C2	N2	H4	0.4°	0.1°
C6	C5	N7	C4	179.6°	180.0°
C6	C5	N7	C8	180.0°	180.0°
C6	C5	C4	N3	0.0°	0.0°
C6	C5	C4	N9	179.2°	180.0°
C5	C6	N1	H5	179.5°	180.0°
N2	C2	N3	C4	179.9°	180.0°
C2	N2	H3	H4	180.0°	179.9°
N2	C2	N1	H5	0.2°	0.1°
C2	N3	C4	C5	0.2°	0.0°
C2	N3	C4	N9	179.1°	180.0°
N3	C2	N2	H3	0.0°	0.1°
N3	C2	N2	H4	180.0°	180.0°
N3	C2	N1	H5	179.3°	180.0°
N7	C5	C4	N3	179.7°	180.0°
N7	C5	C4	N9	1.1°	0.0°
C5	N7	C8	N9	0.4°	0.0°
C5	N7	C8	H24	179.5°	180.0°
C4	C5	N7	C8	0.4°	0.0°
C5	C4	N3	N9	178.9°	180.0°
C5	C4	N9	C8	1.3°	0.0°
C5	C4	N9	C1'	179.5°	180.0°
N7	C8	N9	C4	1.2°	0.0°
N7	C8	N9	H24	180.0°	180.0°
N7	C8	N9	C1'	179.3°	180.0°
N3	C4	N9	C8	179.6°	180.0°
N3	C4	N9	C1'	1.4°	0.0°
C4	N9	C8	C1'	178.1°	180.0°
C4	N9	C1'	C2'	133.0°	85.0°
C4	N9	C1'	O4'	112.0°	160.9°
C4	N9	C1'	H23	10.0°	38.0°
C4	N9	C8	H24	178.8°	180.0°
C8	N9	C1'	C2'	49.1°	95.0°
C8	N9	C1'	O4'	65.9°	19.1°
C8	N9	C1'	H23	172.1°	142.0°
N9	C1'	C2'	O4'	116.2°	118.6°
N9	C1'	C2'	H23	123.4°	123.0°
N9	C1'	O4'	H23	121.5°	123.0°
N9	C1'	C2'	O2'	87.2°	86.2°
N9	C1'	C2'	C3'	149.4°	155.5°
N9	C1'	O4'	C4'	156.1°	158.5°
N9	C1'	C2'	H21	34.6°	37.3°
C1'	N9	C8	H24	0.7°	0.0°
C2'	C1'	O4'	H23	119.3°	118.4°
C1'	C2'	O2'	C3'	116.5°	112.7°
C1'	C2'	O2'	H21	121.1°	123.6°
C1'	C2'	C3'	H21	114.8°	118.1°
C2'	C1'	O4'	C4'	36.9°	39.9°
C1'	C2'	C3'	C4'	17.6°	20.9°
C1'	C2'	C3'	O3'	103.8°	97.8°
C1'	C2'	C3'	H19	133.8°	139.6°
C1'	C2'	O2'	H22	180.0°	174.1°
O4'	C1'	C2'	O2'	156.6°	155.2°
O4'	C1'	C2'	C3'	33.1°	36.9°
C1'	O4'	C4'	C3'	25.0°	26.4°
C1'	O4'	C4'	C5'	145.7°	145.9°
C1'	O4'	C4'	H18	94.8°	93.0°
O4'	C1'	C2'	H21	81.7°	81.3°
O2'	C2'	C3'	H21	123.0°	123.6°
O2'	C2'	C3'	C4'	139.7°	139.1°
O2'	C2'	C3'	O3'	18.3°	20.4°
O2'	C2'	C3'	H19	104.0°	102.1°
O2'	C2'	C1'	H23	36.2°	36.8°
C2'	C3'	C4'	O4'	3.3°	2.0°
C2'	C3'	C4'	O3'	122.0°	118.7°
C2'	C3'	C4'	H19	116.4°	118.8°
C2'	C3'	O3'	H19	121.6°	122.6°
C2'	C3'	C4'	C5'	119.4°	121.5°
C2'	C3'	C4'	H18	117.6°	117.5°
C2'	C3'	O3'	H20	180.0°	65.2°
C3'	C2'	O2'	H22	63.5°	61.4°
C3'	C2'	C1'	H23	87.2°	81.5°
O4'	C4'	C3'	C5'	116.2°	119.5°
O4'	C4'	C3'	H18	120.8°	119.5°
O4'	C4'	C3'	O3'	125.2°	120.6°
O4'	C4'	C5'	H18	120.4°	121.1°
O4'	C4'	C5'	O5'	164.4°	66.7°
O4'	C4'	C5'	H16	75.8°	53.3°
O4'	C4'	C5'	H17	44.6°	173.3°
O4'	C4'	C3'	H19	113.1°	116.8°
C4'	O4'	C1'	H23	82.4°	78.6°
C4'	C3'	O3'	H19	120.9°	122.6°
C3'	C4'	C5'	H18	122.9°	120.9°
C3'	C4'	C5'	O5'	78.9°	175.3°
C3'	C4'	C5'	H16	40.9°	64.7°
C3'	C4'	C5'	H17	161.3°	55.3°
C4'	C3'	O3'	H20	62.6°	180.0°
C4'	C3'	C2'	H21	97.2°	97.3°
O3'	C3'	C4'	C5'	118.6°	119.9°
O3'	C3'	C4'	H18	4.4°	1.1°
O3'	C3'	C2'	H21	141.4°	144.0°
C4'	C5'	O5'	H16	119.8°	120.0°
C4'	C5'	O5'	H17	119.8°	120.0°
C4'	C5'	O5'	P1	126.0°	180.0°
C4'	C5'	H16	H17	120.6°	120.0°
C5'	C4'	C3'	H19	3.1°	2.7°
C5'	O5'	P1	O2	22.6°	50.0°
C5'	O5'	P1	N4	90.8°	70.0°
C5'	O5'	P1	O3	151.1°	170.0°
O5'	C5'	H16	H17	120.7°	120.0°
O5'	C5'	C4'	H18	44.0°	54.3°
C11	N18	C17	O19	9.4°	0.1°
C11	N18	C17	H9	180.0°	179.9°
C11	N18	C17	C1	169.0°	180.0°
N18	C11	H25	H26	120.0°	119.9°
N18	C11	H25	H27	120.0°	120.1°
N18	C11	H26	H27	120.0°	120.0°
O19	C17	N18	C1	178.3°	180.0°
O19	C17	C1	N4	35.0°	0.0°
O19	C17	C1	C3	82.1°	120.0°
O19	C17	C1	H2	159.1°	120.0°
O19	C17	N18	H9	170.6°	180.0°
N18	C17	C1	N4	146.6°	180.0°
N18	C17	C1	C3	96.3°	60.0°
N18	C17	C1	H2	22.6°	60.0°
C17	N18	C11	H25	180.0°	59.9°
C17	N18	C11	H26	60.0°	60.0°
C17	N18	C11	H27	60.0°	180.0°
C17	C1	N4	P1	92.9°	95.0°
C17	C1	N4	C3	117.2°	120.0°
C17	C1	N4	H2	123.7°	120.1°
C17	C1	C3	H2	119.0°	120.0°
C17	C1	C3	C7	57.2°	175.0°
C17	C1	N4	H6	145.3°	141.0°
C17	C1	C3	H7	177.8°	64.9°
C17	C1	C3	H8	63.4°	55.0°
C1	C17	N18	H9	11.1°	0.1°
O5'	P1	O2	N4	111.4°	120.0°
O5'	P1	O2	O3	118.7°	120.0°
O5'	P1	N4	O3	111.1°	120.0°
O5'	P1	N4	C1	154.8°	60.0°
O5'	P1	O3	H1	121.7°	60.0°
O5'	P1	N4	H6	83.4°	64.0°
P1	O5'	C5'	H16	6.2°	60.0°
P1	O5'	C5'	H17	114.3°	60.0°
O2	P1	N4	O3	133.7°	120.0°
O2	P1	N4	C1	39.6°	179.9°
O2	P1	O3	H1	0.0°	180.0°
O2	P1	N4	H6	161.3°	56.1°
P1	N4	C1	H6	121.8°	124.0°
P1	N4	C1	C3	149.9°	145.0°
N4	P1	O3	H1	127.1°	60.0°
P1	N4	C1	H2	30.8°	25.0°
O3	P1	N4	C1	94.1°	60.0°
O3	P1	N4	H6	27.7°	176.0°
N4	C1	C3	H2	119.6°	119.9°
N4	C1	C3	C7	178.7°	65.0°
N4	C1	C3	H7	60.7°	55.1°
N4	C1	C3	H8	58.0°	175.0°
C1	C3	C7	C12	81.9°	94.7°
C1	C3	C7	H7	120.6°	120.0°
C1	C3	C7	H8	120.6°	120.0°
C1	C3	C7	C9	99.3°	85.0°
C3	C1	N4	H6	28.1°	21.0°
C1	C3	H7	H8	118.1°	119.9°
N11	C12	C7	H10	180.0°	180.0°
N11	C12	C7	C3	179.5°	180.0°
C12	N11	C10	H11	180.0°	180.0°
N11	C12	C7	C9	0.5°	0.2°
C12	N11	C10	C9	0.3°	0.3°
C12	N11	C10	C16	179.4°	180.0°
C12	C7	C3	C9	178.8°	179.7°
C7	C12	N11	C10	0.5°	0.0°
C12	C7	C9	C10	0.3°	0.4°
C12	C7	C9	C13	179.2°	179.5°
C12	C7	C3	H7	157.5°	145.3°
C12	C7	C3	H8	38.7°	25.3°
C7	C12	N11	H11	179.5°	180.0°
C3	C7	C9	C10	179.4°	179.9°
C3	C7	C9	C13	0.1°	0.7°
C7	C3	C1	H2	61.7°	55.0°
C7	C3	H7	H8	118.1°	120.0°
C3	C7	C12	H10	0.5°	0.0°
N11	C10	C9	C7	0.0°	0.4°
N11	C10	C9	C16	179.7°	179.8°
N11	C10	C9	C13	179.5°	179.7°
N11	C10	C16	C15	179.6°	179.9°
C10	N11	C12	H10	179.5°	180.0°
N11	C10	C16	H12	0.4°	0.0°
C7	C9	C10	C13	179.5°	179.3°
C7	C9	C10	C16	179.8°	179.8°
C7	C9	C13	C14	179.4°	179.6°
C9	C7	C3	H7	21.3°	35.0°
C9	C7	C3	H8	140.1°	155.0°
C9	C7	C12	H10	179.5°	179.8°
C7	C9	C13	H15	0.6°	0.6°
C9	C10	C16	C15	0.0°	0.2°
C10	C9	C13	C14	0.0°	0.5°
C9	C10	N11	H11	179.7°	179.7°
C9	C10	C16	H12	180.0°	179.8°
C10	C9	C13	H15	180.0°	179.7°
C16	C10	C9	C13	0.2°	0.5°
C10	C16	C15	H12	180.0°	180.0°
C10	C16	C15	C14	0.4°	0.0°
C16	C10	N11	H11	0.6°	0.0°
C10	C16	C15	H13	179.6°	180.0°
C9	C13	C14	H15	180.0°	179.7°
C9	C13	C14	C15	0.4°	0.3°
C9	C13	C14	H14	179.6°	179.7°
C16	C15	C14	C13	0.6°	0.0°
C16	C15	C14	H13	180.0°	180.0°
C16	C15	C14	H14	179.4°	180.0°
C13	C14	C15	H14	180.0°	180.0°
C13	C14	C15	H13	179.4°	180.0°
C14	C15	C16	H12	179.6°	180.0°
C15	C14	C13	H15	179.6°	180.0°
H2	C1	N4	H6	91.0°	98.9°
H2	C1	C3	H7	58.8°	175.0°
H2	C1	C3	H8	177.6°	65.1°
H9	N18	C11	H25	0.1°	120.0°
H9	N18	C11	H26	120.0°	120.0°
H9	N18	C11	H27	120.0°	0.1°
H10	C12	N11	H11	0.5°	0.0°
H12	C16	C15	H13	0.4°	0.0°
H13	C15	C14	H14	0.6°	0.0°
H14	C14	C13	H15	0.3°	0.0°
H16	C5'	C4'	H18	163.8°	174.3°
H17	C5'	C4'	H18	75.8°	65.7°
H18	C4'	C3'	H19	126.1°	123.7°
H19	C3'	O3'	H20	58.3°	57.4°
H19	C3'	C2'	H21	19.1°	21.5°
H21	C2'	O2'	H22	58.9°	62.3°
H21	C2'	C1'	H23	158.0°	160.3°
H25	C11	H26	H27	120.0°	120.0°

Release date:	2017-06-28
Definition date:	2016-06-28
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	5KMB