6U4
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N6 | C6 | sing | 1.37Å | 1.36Å | |
| N1 | C6 | sing | 1.36Å | 1.34Å | |
| N1 | C2 | sing | 1.34Å | 1.36Å | |
| C6 | C5 | doub | 1.40Å | 1.39Å | |
| O2 | C2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.33Å | 1.35Å | |
| C5 | N7 | sing | 1.36Å | 1.36Å | |
| C5 | C4 | sing | 1.41Å | 1.39Å | |
| N7 | C8 | doub | 1.30Å | 1.36Å | |
| N3 | C4 | doub | 1.33Å | 1.35Å | |
| C4 | N9 | sing | 1.37Å | 1.32Å | |
| C8 | N9 | sing | 1.37Å | 1.34Å | |
| N9 | C1' | sing | 1.46Å | 1.48Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1' | C2' | sing | 1.54Å | 1.54Å | |
| O4' | C4' | sing | 1.45Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| O5' | PA | sing | 1.61Å | 1.59Å | |
| O1A | PA | doub | 1.48Å | 1.50Å | |
| PA | O2A | sing | 1.61Å | 1.49Å | |
| PA | O3A | sing | 1.61Å | 1.61Å | |
| O3A | PB | sing | 1.61Å | 1.61Å | |
| O3B | PB | sing | 1.61Å | 1.63Å | |
| O3B | PG | sing | 1.61Å | 1.62Å | |
| O1G | PG | doub | 1.48Å | 1.52Å | |
| PB | O1B | doub | 1.48Å | 1.50Å | |
| PB | O2B | sing | 1.61Å | 1.50Å | |
| O3G | PG | sing | 1.61Å | 1.51Å | |
| PG | O2G | sing | 1.61Å | 1.52Å | |
| O3G | H1 | sing | 0.97Å | 0.95Å | |
| O2G | H2 | sing | 0.97Å | 0.95Å | |
| O2B | H3 | sing | 0.97Å | 0.95Å | |
| O2A | H4 | sing | 0.97Å | 0.95Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C4' | H7 | sing | 1.09Å | 1.10Å | |
| C3' | H8 | sing | 1.09Å | 1.10Å | |
| O3' | H9 | sing | 0.97Å | 0.95Å | |
| C2' | H10 | sing | 1.09Å | 1.10Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| C1' | H12 | sing | 1.09Å | 1.10Å | |
| C8 | H13 | sing | 1.08Å | 1.08Å | |
| N6 | H14 | sing | 0.97Å | 1.00Å | |
| N6 | H15 | sing | 0.97Å | 1.00Å | |
| N1 | H16 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N6 | C6 | N1 | 121.4° | 120.8° |
| N6 | C6 | C5 | 121.2° | 120.7° |
| C6 | N6 | H14 | 109.5° | 120.0° |
| C6 | N6 | H15 | 109.4° | 119.9° |
| C6 | N1 | C2 | 122.7° | 120.5° |
| N1 | C6 | C5 | 117.4° | 118.4° |
| C6 | N1 | H16 | 118.6° | 119.8° |
| N1 | C2 | O2 | 119.4° | 119.1° |
| N1 | C2 | N3 | 121.3° | 121.9° |
| C2 | N1 | H16 | 118.7° | 119.8° |
| C6 | C5 | N7 | 133.0° | 134.3° |
| C6 | C5 | C4 | 118.6° | 118.6° |
| O2 | C2 | N3 | 119.3° | 119.1° |
| C2 | N3 | C4 | 117.0° | 121.0° |
| N7 | C5 | C4 | 108.4° | 107.1° |
| C5 | N7 | C8 | 106.2° | 109.4° |
| C5 | C4 | N3 | 122.9° | 119.7° |
| C5 | C4 | N9 | 106.9° | 105.9° |
| N7 | C8 | N9 | 109.2° | 110.1° |
| N7 | C8 | H13 | 125.4° | 125.0° |
| N3 | C4 | N9 | 130.1° | 134.4° |
| C4 | N9 | C8 | 109.2° | 107.5° |
| C4 | N9 | C1' | 124.7° | 126.2° |
| C8 | N9 | C1' | 126.0° | 126.3° |
| N9 | C8 | H13 | 125.5° | 124.9° |
| N9 | C1' | O4' | 110.9° | 110.3° |
| N9 | C1' | C2' | 110.4° | 110.3° |
| N9 | C1' | H12 | 110.2° | 110.5° |
| O4' | C1' | C2' | 104.5° | 104.8° |
| C1' | O4' | C4' | 111.4° | 105.2° |
| O4' | C1' | H12 | 111.3° | 110.4° |
| C1' | C2' | C3' | 101.8° | 104.1° |
| C1' | C2' | H10 | 111.4° | 110.6° |
| C1' | C2' | H11 | 111.3° | 110.6° |
| C2' | C1' | H12 | 109.4° | 110.4° |
| O4' | C4' | C5' | 107.3° | 110.3° |
| O4' | C4' | C3' | 106.5° | 104.8° |
| O4' | C4' | H7 | 111.1° | 110.4° |
| C2' | C3' | C4' | 102.2° | 104.1° |
| C2' | C3' | O3' | 108.7° | 110.5° |
| C2' | C3' | H8 | 111.6° | 110.6° |
| C3' | C2' | H10 | 111.3° | 110.5° |
| C3' | C2' | H11 | 111.4° | 110.5° |
| C5' | C4' | C3' | 112.1° | 110.4° |
| C4' | C5' | O5' | 107.1° | 109.5° |
| C4' | C5' | H5 | 110.1° | 109.5° |
| C4' | C5' | H6 | 110.1° | 109.5° |
| C5' | C4' | H7 | 109.9° | 110.3° |
| C4' | C3' | O3' | 108.8° | 110.5° |
| C3' | C4' | H7 | 109.9° | 110.4° |
| C4' | C3' | H8 | 111.8° | 110.5° |
| C5' | O5' | PA | 120.9° | 123.0° |
| O5' | C5' | H5 | 110.1° | 109.4° |
| O5' | C5' | H6 | 110.1° | 109.5° |
| O3' | C3' | H8 | 113.1° | 110.5° |
| C3' | O3' | H9 | 109.5° | 114.0° |
| O5' | PA | O1A | 108.0° | 109.5° |
| O5' | PA | O2A | 109.8° | 109.5° |
| O5' | PA | O3A | 96.9° | 109.5° |
| O1A | PA | O2A | 120.2° | 109.5° |
| O1A | PA | O3A | 107.7° | 109.5° |
| O2A | PA | O3A | 111.7° | 109.5° |
| PA | O2A | H4 | 109.5° | 114.0° |
| PA | O3A | PB | 131.5° | 134.0° |
| O3A | PB | O3B | 99.4° | 109.5° |
| O3A | PB | O1B | 108.2° | 109.5° |
| O3A | PB | O2B | 107.3° | 109.5° |
| PB | O3B | PG | 131.0° | 134.0° |
| O3B | PB | O1B | 110.8° | 109.5° |
| O3B | PB | O2B | 110.0° | 109.4° |
| O3B | PG | O1G | 103.1° | 109.5° |
| O3B | PG | O3G | 102.8° | 109.4° |
| O3B | PG | O2G | 105.9° | 109.5° |
| O1G | PG | O3G | 112.7° | 109.5° |
| O1G | PG | O2G | 114.7° | 109.5° |
| O1B | PB | O2B | 119.3° | 109.5° |
| PB | O2B | H3 | 109.5° | 114.0° |
| O3G | PG | O2G | 115.8° | 109.5° |
| PG | O3G | H1 | 109.5° | 114.0° |
| PG | O2G | H2 | 109.5° | 114.0° |
| H5 | C5' | H6 | 109.5° | 109.5° |
| H10 | C2' | H11 | 109.5° | 110.4° |
| H14 | N6 | H15 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N6 | C6 | N1 | C5 | 177.7° | 179.9° |
| N6 | C6 | N1 | C2 | 178.6° | 180.0° |
| N6 | C6 | C5 | N7 | 0.7° | 0.0° |
| N6 | C6 | C5 | C4 | 178.9° | 179.7° |
| C6 | N6 | H14 | H15 | 120.0° | 179.9° |
| N6 | C6 | N1 | H16 | 1.4° | 0.0° |
| C6 | N1 | C2 | H16 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 175.6° | 180.0° |
| C6 | N1 | C2 | N3 | 3.4° | 0.0° |
| N1 | C6 | C5 | N7 | 177.0° | 180.0° |
| N1 | C6 | C5 | C4 | 1.2° | 0.3° |
| N1 | C6 | N6 | H14 | 180.0° | 180.0° |
| N1 | C6 | N6 | H15 | 60.0° | 0.1° |
| C2 | N1 | C6 | C5 | 3.7° | 0.0° |
| N1 | C2 | O2 | N3 | 179.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.4° | 0.3° |
| C6 | C5 | N7 | C4 | 178.3° | 179.7° |
| C6 | C5 | N7 | C8 | 178.9° | 180.0° |
| C6 | C5 | C4 | N3 | 1.7° | 0.6° |
| C6 | C5 | C4 | N9 | 178.9° | 179.8° |
| C5 | C6 | N6 | H14 | 2.4° | 0.1° |
| C5 | C6 | N6 | H15 | 117.6° | 180.0° |
| C5 | C6 | N1 | H16 | 176.3° | 179.9° |
| O2 | C2 | N3 | C4 | 178.6° | 179.7° |
| O2 | C2 | N1 | H16 | 4.4° | 0.0° |
| C2 | N3 | C4 | C5 | 2.1° | 0.6° |
| C2 | N3 | C4 | N9 | 178.7° | 179.6° |
| N3 | C2 | N1 | H16 | 176.6° | 180.0° |
| N7 | C5 | C4 | N3 | 179.7° | 179.6° |
| N7 | C5 | C4 | N9 | 0.3° | 0.4° |
| C5 | N7 | C8 | N9 | 0.6° | 0.0° |
| C5 | N7 | C8 | H13 | 179.4° | 180.0° |
| C4 | C5 | N7 | C8 | 0.6° | 0.3° |
| C5 | C4 | N3 | N9 | 179.2° | 179.0° |
| C5 | C4 | N9 | C8 | 0.1° | 0.4° |
| C5 | C4 | N9 | C1' | 178.3° | 179.8° |
| N7 | C8 | N9 | C4 | 0.5° | 0.2° |
| N7 | C8 | N9 | H13 | 180.0° | 180.0° |
| N7 | C8 | N9 | C1' | 177.9° | 180.0° |
| N3 | C4 | N9 | C8 | 179.2° | 179.4° |
| N3 | C4 | N9 | C1' | 2.4° | 0.8° |
| C4 | N9 | C8 | C1' | 178.3° | 179.8° |
| C4 | N9 | C1' | O4' | 135.4° | 126.7° |
| C4 | N9 | C1' | C2' | 109.3° | 117.9° |
| C4 | N9 | C1' | H12 | 11.7° | 4.4° |
| C4 | N9 | C8 | H13 | 179.6° | 179.7° |
| C8 | N9 | C1' | O4' | 46.5° | 53.5° |
| C8 | N9 | C1' | C2' | 68.8° | 61.8° |
| C8 | N9 | C1' | H12 | 170.2° | 175.9° |
| N9 | C1' | O4' | C2' | 118.9° | 118.8° |
| N9 | C1' | O4' | H12 | 123.1° | 122.4° |
| N9 | C1' | C2' | H12 | 121.5° | 122.4° |
| N9 | C1' | O4' | C4' | 137.4° | 159.3° |
| N9 | C1' | C2' | C3' | 152.9° | 142.8° |
| N9 | C1' | C2' | H10 | 88.3° | 24.1° |
| N9 | C1' | C2' | H11 | 34.1° | 98.6° |
| C1' | N9 | C8 | H13 | 2.1° | 0.0° |
| O4' | C1' | C2' | H12 | 119.3° | 118.8° |
| O4' | C1' | C2' | C3' | 33.7° | 24.0° |
| C1' | O4' | C4' | C5' | 115.6° | 159.4° |
| C1' | O4' | C4' | C3' | 4.7° | 40.5° |
| C1' | O4' | C4' | H7 | 124.3° | 78.4° |
| O4' | C1' | C2' | H10 | 152.4° | 94.7° |
| O4' | C1' | C2' | H11 | 85.1° | 142.7° |
| C2' | C1' | O4' | C4' | 18.5° | 40.5° |
| C1' | C2' | C3' | H10 | 118.8° | 118.7° |
| C1' | C2' | C3' | H11 | 118.8° | 118.8° |
| C1' | C2' | C3' | C4' | 35.5° | 0.0° |
| C1' | C2' | C3' | O3' | 79.4° | 118.6° |
| C1' | C2' | C3' | H8 | 155.2° | 118.7° |
| C1' | C2' | H10 | H11 | 123.5° | 122.8° |
| O4' | C4' | C3' | C2' | 25.8° | 24.0° |
| O4' | C4' | C5' | C3' | 116.6° | 115.4° |
| O4' | C4' | C5' | H7 | 120.9° | 122.3° |
| O4' | C4' | C3' | H7 | 120.5° | 118.9° |
| O4' | C4' | C5' | O5' | 168.9° | 69.6° |
| O4' | C4' | C3' | O3' | 89.0° | 142.6° |
| O4' | C4' | C5' | H5 | 71.4° | 50.4° |
| O4' | C4' | C5' | H6 | 49.3° | 170.4° |
| O4' | C4' | C3' | H8 | 145.3° | 94.8° |
| C4' | O4' | C1' | H12 | 99.5° | 78.3° |
| C2' | C3' | C4' | C5' | 91.3° | 142.8° |
| C2' | C3' | C4' | O3' | 114.8° | 118.7° |
| C2' | C3' | C4' | H8 | 119.5° | 118.8° |
| C2' | C3' | O3' | H8 | 124.6° | 122.8° |
| C2' | C3' | C4' | H7 | 146.2° | 95.0° |
| C2' | C3' | O3' | H9 | 180.0° | 65.4° |
| C3' | C2' | H10 | H11 | 123.5° | 122.5° |
| C3' | C2' | C1' | H12 | 85.6° | 94.8° |
| C5' | C4' | C3' | H7 | 122.5° | 122.3° |
| C4' | C5' | O5' | H5 | 119.6° | 120.0° |
| C4' | C5' | O5' | H6 | 119.6° | 120.0° |
| C5' | C4' | C3' | O3' | 153.9° | 98.6° |
| C4' | C5' | O5' | PA | 125.2° | 180.0° |
| C4' | C5' | H5 | H6 | 121.1° | 120.0° |
| C5' | C4' | C3' | H8 | 28.3° | 24.0° |
| C3' | C4' | C5' | O5' | 74.5° | 175.0° |
| C4' | C3' | O3' | H8 | 124.9° | 122.6° |
| C3' | C4' | C5' | H5 | 45.1° | 65.0° |
| C3' | C4' | C5' | H6 | 165.9° | 55.0° |
| C4' | C3' | O3' | H9 | 69.5° | 180.0° |
| C4' | C3' | C2' | H10 | 154.3° | 118.7° |
| C4' | C3' | C2' | H11 | 83.2° | 118.8° |
| C5' | O5' | PA | O1A | 69.4° | 55.0° |
| C5' | O5' | PA | O2A | 63.3° | 65.0° |
| C5' | O5' | PA | O3A | 179.4° | 175.0° |
| O5' | C5' | H5 | H6 | 121.1° | 120.0° |
| O5' | C5' | C4' | H7 | 48.0° | 52.7° |
| O3' | C3' | C4' | H7 | 31.4° | 23.7° |
| O3' | C3' | C2' | H10 | 39.4° | 122.7° |
| O3' | C3' | C2' | H11 | 161.8° | 0.2° |
| O5' | PA | O1A | O2A | 126.9° | 120.0° |
| O5' | PA | O1A | O3A | 103.7° | 120.0° |
| O5' | PA | O2A | O3A | 106.4° | 120.0° |
| O5' | PA | O3A | PB | 161.2° | 165.0° |
| O5' | PA | O2A | H4 | 126.1° | 60.0° |
| PA | O5' | C5' | H5 | 115.1° | 60.0° |
| PA | O5' | C5' | H6 | 5.6° | 60.0° |
| O1A | PA | O2A | O3A | 127.6° | 120.0° |
| O1A | PA | O3A | PB | 87.4° | 45.0° |
| O1A | PA | O2A | H4 | 0.0° | 180.0° |
| O2A | PA | O3A | PB | 46.6° | 75.0° |
| PA | O3A | PB | O3B | 61.9° | 160.0° |
| PA | O3A | PB | O1B | 53.7° | 40.0° |
| PA | O3A | PB | O2B | 176.4° | 80.0° |
| O3A | PA | O2A | H4 | 127.6° | 60.0° |
| O3A | PB | O3B | O1B | 113.6° | 120.0° |
| O3A | PB | O3B | O2B | 112.4° | 120.0° |
| O3A | PB | O3B | PG | 168.6° | 165.0° |
| O3A | PB | O1B | O2B | 122.9° | 120.1° |
| O3A | PB | O2B | H3 | 123.3° | 59.9° |
| PB | O3B | PG | O1G | 112.4° | 40.0° |
| O3B | PB | O1B | O2B | 129.2° | 120.0° |
| PB | O3B | PG | O3G | 130.3° | 160.0° |
| PB | O3B | PG | O2G | 8.4° | 80.0° |
| O3B | PB | O2B | H3 | 129.6° | 60.1° |
| O3B | PG | O1G | O3G | 110.2° | 120.0° |
| O3B | PG | O1G | O2G | 114.6° | 120.0° |
| PG | O3B | PB | O1B | 55.0° | 45.0° |
| PG | O3B | PB | O2B | 79.0° | 75.0° |
| O3B | PG | O3G | O2G | 114.9° | 120.0° |
| O3B | PG | O3G | H1 | 110.3° | 180.0° |
| O3B | PG | O2G | H2 | 113.0° | 60.0° |
| O1G | PG | O3G | O2G | 134.8° | 120.0° |
| O1G | PG | O3G | H1 | 0.0° | 60.0° |
| O1G | PG | O2G | H2 | 0.0° | 180.0° |
| O1B | PB | O2B | H3 | 0.0° | 180.0° |
| O3G | PG | O2G | H2 | 133.9° | 60.0° |
| O2G | PG | O3G | H1 | 134.7° | 60.0° |
| H5 | C5' | C4' | H7 | 167.6° | 172.7° |
| H6 | C5' | C4' | H7 | 71.6° | 67.3° |
| H7 | C4' | C3' | H8 | 94.2° | 146.3° |
| H8 | C3' | O3' | H9 | 55.4° | 57.4° |
| H8 | C3' | C2' | H10 | 86.0° | 0.0° |
| H8 | C3' | C2' | H11 | 36.4° | 122.5° |
| H10 | C2' | C1' | H12 | 33.1° | 146.5° |
| H11 | C2' | C1' | H12 | 155.6° | 23.8° |
