6SY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O	C	doub	1.22Å	1.25Å
C	N1	sing	1.35Å	1.32Å
C	C1	sing	1.42Å	1.37Å
N1	C8	sing	1.35Å	1.35Å
C1	C2	doub	1.35Å	1.40Å
C8	O7	doub	1.22Å	1.21Å
C8	N	sing	1.35Å	1.38Å
C2	N	sing	1.37Å	1.35Å
N	C3	sing	1.47Å	1.47Å
C3	O1	sing	1.45Å	1.46Å
C3	C7	sing	1.55Å	1.52Å
O1	C4	sing	1.42Å	1.44Å
C7	O6	sing	1.43Å	1.44Å
C7	C6	sing	1.53Å	1.52Å
C4	C6	sing	1.55Å	1.51Å
C4	C5	sing	1.52Å	1.53Å
C6	O5	sing	1.43Å	1.41Å
C5	O2	sing	1.45Å	1.47Å
O5	P	sing	1.63Å	1.68Å
O3	P	doub	1.48Å	1.50Å
O2	P	sing	1.62Å	1.59Å
P	O4	sing	1.61Å	1.52Å
N1	H1	sing	0.97Å	1.00Å
C2	H2	sing	1.08Å	1.08Å
C4	H3	sing	1.09Å	1.10Å
C5	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C6	H6	sing	1.09Å	1.10Å
O4	H7	sing	0.97Å	0.95Å
C1	H8	sing	1.08Å	1.08Å
C3	H9	sing	1.09Å	1.10Å
C7	H10	sing	1.09Å	1.10Å
O6	H11	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C	N1	119.3°	120.3°
O	C	C1	122.4°	120.3°
N1	C	C1	118.3°	119.4°
C	N1	C8	122.5°	120.3°
C	N1	H1	118.7°	119.8°
C	C1	C2	119.5°	119.1°
C	C1	H8	120.3°	120.4°
N1	C8	O7	120.0°	119.5°
N1	C8	N	121.7°	120.9°
C8	N1	H1	118.8°	119.9°
C1	C2	N	121.8°	119.7°
C1	C2	H2	119.1°	120.1°
C2	C1	H8	120.2°	120.4°
O7	C8	N	118.2°	119.5°
C8	N	C2	116.1°	120.6°
C8	N	C3	121.8°	119.7°
C2	N	C3	121.9°	119.7°
N	C2	H2	119.1°	120.2°
N	C3	O1	106.8°	109.9°
N	C3	C7	114.5°	109.9°
N	C3	H9	109.6°	109.9°
O1	C3	C7	107.2°	107.1°
C3	O1	C4	106.8°	105.4°
O1	C3	H9	109.7°	109.9°
C3	C7	O6	110.9°	110.7°
C3	C7	C6	101.5°	103.3°
C7	C3	H9	109.0°	110.1°
C3	C7	H10	109.7°	110.7°
O1	C4	C6	102.5°	103.0°
O1	C4	C5	118.5°	116.6°
O1	C4	H3	107.1°	108.9°
O6	C7	C6	113.8°	110.6°
O6	C7	H10	110.8°	110.5°
C7	O6	H11	109.5°	114.0°
C7	C6	C4	101.5°	100.9°
C7	C6	O5	117.1°	114.7°
C7	C6	H6	109.0°	111.9°
C6	C7	H10	109.7°	110.8°
C6	C4	C5	115.6°	109.0°
C4	C6	O5	108.8°	106.2°
C6	C4	H3	106.3°	109.5°
C4	C6	H6	109.2°	111.4°
C4	C5	O2	108.2°	106.7°
C5	C4	H3	106.0°	109.5°
C4	C5	H4	109.8°	110.0°
C4	C5	H5	109.8°	110.0°
C6	O5	P	115.0°	116.6°
O5	C6	H6	110.7°	111.2°
C5	O2	P	121.9°	120.2°
O2	C5	H4	109.8°	110.0°
O2	C5	H5	109.8°	110.0°
O5	P	O3	107.1°	110.0°
O5	P	O2	101.2°	106.8°
O5	P	O4	104.3°	110.0°
O3	P	O2	106.9°	110.0°
O3	P	O4	118.4°	110.0°
O2	P	O4	117.0°	110.0°
P	O4	H7	109.5°	114.0°
H4	C5	H5	109.5°	110.1°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C	N1	C1	179.2°	179.9°
O	C	N1	C8	179.5°	180.0°
O	C	C1	C2	179.5°	179.4°
O	C	N1	H1	0.5°	0.4°
O	C	C1	H8	0.5°	0.1°
C	N1	C8	H1	180.0°	179.6°
N1	C	C1	C2	0.3°	0.5°
C	N1	C8	O7	179.1°	179.7°
C	N1	C8	N	0.5°	0.3°
N1	C	C1	H8	179.7°	180.0°
C1	C	N1	C8	0.2°	0.0°
C	C1	C2	H8	180.0°	179.5°
C	C1	C2	N	0.7°	0.8°
C1	C	N1	H1	179.7°	179.7°
C	C1	C2	H2	179.2°	179.7°
N1	C8	O7	N	179.6°	180.0°
N1	C8	N	C2	0.8°	0.0°
N1	C8	N	C3	176.6°	179.4°
C1	C2	N	C8	0.9°	0.6°
C1	C2	N	H2	180.0°	179.5°
C1	C2	N	C3	176.7°	180.0°
O7	C8	N	C2	178.8°	180.0°
O7	C8	N	C3	3.0°	0.6°
O7	C8	N1	H1	0.9°	0.1°
C8	N	C2	C3	175.8°	179.4°
C8	N	C3	O1	129.8°	54.1°
C8	N	C3	C7	111.7°	63.5°
N	C8	N1	H1	179.5°	179.9°
C8	N	C2	H2	179.0°	179.9°
C8	N	C3	H9	11.1°	175.2°
C2	N	C3	O1	45.7°	126.5°
C2	N	C3	C7	72.8°	115.9°
N	C2	C1	H8	179.3°	179.7°
C2	N	C3	H9	164.4°	5.4°
N	C3	O1	C7	123.2°	119.4°
N	C3	O1	H9	118.6°	121.1°
N	C3	C7	H9	123.1°	121.2°
N	C3	O1	C4	133.9°	146.1°
N	C3	C7	O6	138.0°	123.4°
N	C3	C7	C6	100.8°	118.2°
C3	N	C2	H2	3.3°	0.5°
N	C3	C7	H10	15.2°	0.5°
O1	C3	C7	H9	118.7°	119.5°
O1	C3	C7	O6	103.8°	117.3°
O1	C3	C7	C6	17.4°	1.2°
C3	O1	C4	C6	34.9°	43.7°
C3	O1	C4	C5	163.5°	163.0°
C3	O1	C4	H3	76.8°	72.5°
O1	C3	C7	H10	133.4°	119.9°
C7	C3	O1	C4	10.7°	26.8°
C3	C7	O6	C6	113.7°	113.9°
C3	C7	O6	H10	122.1°	123.0°
C3	C7	C6	H10	116.0°	118.6°
C3	C7	C6	C4	37.7°	25.7°
C3	C7	C6	O5	155.9°	139.4°
C3	C7	C6	H6	77.5°	92.8°
C3	C7	O6	H11	180.0°	61.4°
O1	C4	C6	C7	45.4°	43.0°
O1	C4	C6	C5	130.4°	124.4°
O1	C4	C6	H3	112.2°	115.8°
O1	C4	C5	H3	120.2°	124.2°
O1	C4	C6	O5	169.4°	162.9°
O1	C4	C5	O2	172.7°	176.9°
O1	C4	C5	H4	52.8°	63.9°
O1	C4	C5	H5	67.5°	57.6°
O1	C4	C6	H6	69.7°	75.9°
C4	O1	C3	H9	107.5°	92.8°
O6	C7	C6	H10	124.8°	122.9°
O6	C7	C6	C4	81.5°	92.7°
O6	C7	C6	O5	36.8°	20.9°
O6	C7	C6	H6	163.3°	148.7°
O6	C7	C3	H9	14.9°	2.2°
C7	C6	C4	O5	124.1°	119.9°
C7	C6	C4	H6	115.1°	118.9°
C7	C6	C4	C5	175.8°	167.5°
C7	C6	O5	H6	125.8°	128.1°
C7	C6	O5	P	176.4°	167.9°
C7	C6	C4	H3	66.8°	72.7°
C6	C7	C3	H9	136.1°	120.7°
C6	C7	O6	H11	66.3°	175.3°
C6	C4	C5	H3	117.5°	119.8°
C4	C6	O5	H6	120.0°	121.4°
C6	C4	C5	O2	50.4°	67.1°
C4	C6	O5	P	62.1°	57.4°
C6	C4	C5	H4	69.5°	52.2°
C6	C4	C5	H5	170.2°	173.6°
C4	C6	C7	H10	153.7°	144.3°
C5	C4	C6	O5	60.1°	72.6°
C4	C5	O2	H4	119.8°	119.3°
C4	C5	O2	H5	119.8°	119.3°
C4	C5	O2	P	48.1°	49.7°
C4	C5	H4	H5	120.5°	121.4°
C5	C4	C6	H6	60.7°	48.6°
C6	O5	P	O3	58.3°	81.3°
C6	O5	P	O2	53.5°	38.0°
C6	O5	P	O4	175.3°	157.3°
O5	C6	C4	H3	57.2°	47.2°
O5	C6	C7	H10	88.1°	102.0°
C5	O2	P	O5	47.1°	34.1°
C5	O2	P	O3	64.8°	85.3°
C5	O2	P	O4	159.7°	153.4°
O2	C5	C4	H3	67.1°	52.7°
O2	C5	H4	H5	120.6°	121.4°
O5	P	O3	O2	107.8°	117.4°
O5	P	O3	O4	117.5°	121.3°
O5	P	O2	O4	112.6°	119.3°
P	O5	C6	H6	57.8°	64.0°
O5	P	O4	H7	118.9°	177.4°
O3	P	O2	O4	135.4°	121.3°
O3	P	O4	H7	0.0°	61.2°
P	O2	C5	H4	71.7°	69.5°
P	O2	C5	H5	167.9°	169.1°
O2	P	O4	H7	130.3°	60.1°
H2	C2	C1	H8	0.7°	0.2°
H3	C4	C5	H4	173.1°	172.0°
H3	C4	C5	H5	52.7°	66.6°
H3	C4	C6	H6	178.1°	168.4°
H6	C6	C7	H10	38.5°	25.8°
H9	C3	C7	H10	107.9°	120.7°
H10	C7	O6	H11	57.9°	61.6°

Release date:	2016-09-14
Definition date:	2016-06-16
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	5KHJ