6PZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C4	sing	1.43Å	1.43Å
C11	C10	sing	1.51Å	1.51Å
O10	C10	doub	1.21Å	1.25Å
C10	N5	sing	1.35Å	1.28Å
C4	C3	sing	1.53Å	1.53Å
C4	C5	sing	1.53Å	1.53Å
N5	C5	sing	1.47Å	1.49Å
C3	C2	sing	1.53Å	1.53Å
C5	C6	sing	1.53Å	1.53Å
C2	C1	sing	1.51Å	1.53Å
C2	O6	sing	1.43Å	1.46Å
O1A	C1	doub	1.21Å	1.25Å
C1	O1B	sing	1.34Å	1.24Å
O10A	C10A	doub	1.21Å	1.25Å
C11A	C10A	sing	1.51Å	1.51Å
C6	O6	sing	1.43Å	1.46Å
C6	C7	sing	1.53Å	1.54Å
C10A	N1	sing	1.35Å	1.28Å
N1	C7	sing	1.47Å	1.49Å
C7	C8	sing	1.53Å	1.54Å
C8	O8	sing	1.43Å	1.43Å
C8	C9	sing	1.53Å	1.53Å
N1	H1	sing	0.97Å	1.00Å
C7	H7	sing	1.09Å	1.10Å
C8	H8	sing	1.09Å	1.10Å
C9	H92	sing	1.09Å	1.10Å
C9	H91	sing	1.09Å	1.10Å
C9	H6A	sing	1.09Å	1.10Å
O8	HO8	sing	0.97Å	0.95Å
C6	H6	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
N5	HN5	sing	0.97Å	1.00Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C3	H32	sing	1.09Å	1.10Å
C3	H31	sing	1.09Å	1.10Å
C2	O2	sing	1.43Å	1.07Å
O1B	HO1B	sing	0.97Å	0.95Å
C11A	H17	sing	1.09Å	1.10Å
C11A	H18	sing	1.09Å	1.10Å
C11A	H19	sing	1.09Å	1.10Å
C11	H111	sing	1.09Å	1.10Å
C11	H113	sing	1.09Å	1.10Å
C11	H112	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4	C4	C3	109.7°	109.5°
O4	C4	C5	109.6°	109.5°
O4	C4	H4	109.6°	109.6°
C4	O4	HO4	109.5°	114.0°
C11	C10	O10	118.5°	120.0°
C11	C10	N5	119.8°	120.0°
C10	C11	H111	109.5°	109.5°
C10	C11	H113	109.5°	109.5°
C10	C11	H112	109.5°	109.5°
O10	C10	N5	121.7°	120.0°
C10	N5	C5	126.7°	120.0°
C10	N5	HN5	116.7°	120.0°
C3	C4	C5	111.3°	109.0°
C4	C3	C2	112.1°	109.2°
C3	C4	H4	108.3°	109.6°
C4	C3	H32	108.8°	109.5°
C4	C3	H31	108.8°	109.6°
C4	C5	N5	110.1°	109.6°
C4	C5	C6	109.4°	109.2°
C4	C5	H5	108.5°	109.5°
C5	C4	H4	108.3°	109.6°
N5	C5	C6	111.2°	109.5°
N5	C5	H5	109.1°	109.5°
C5	N5	HN5	116.7°	120.0°
C3	C2	C1	115.2°	109.5°
C3	C2	O6	103.5°	109.4°
C2	C3	H32	108.8°	109.5°
C2	C3	H31	108.8°	109.5°
C3	C2	O2	107.9°	109.5°
C5	C6	O6	105.9°	109.4°
C5	C6	C7	114.2°	109.5°
C5	C6	H6	108.7°	109.4°
C6	C5	H5	108.5°	109.6°
C1	C2	O6	102.8°	109.5°
C2	C1	O1A	120.6°	120.0°
C2	C1	O1B	119.9°	120.0°
C1	C2	O2	108.4°	109.5°
C2	O6	C6	117.7°	114.1°
O6	C2	O2	119.4°	109.5°
O1A	C1	O1B	119.5°	120.0°
C1	O1B	HO1B	109.5°	117.0°
O10A	C10A	C11A	118.6°	120.0°
O10A	C10A	N1	121.4°	120.0°
C11A	C10A	N1	120.0°	120.0°
C10A	C11A	H17	109.5°	109.5°
C10A	C11A	H18	109.4°	109.5°
C10A	C11A	H19	109.5°	109.5°
O6	C6	C7	109.7°	109.5°
O6	C6	H6	109.7°	109.5°
C6	C7	N1	112.2°	109.5°
C6	C7	C8	111.8°	109.5°
C6	C7	H7	106.8°	109.5°
C7	C6	H6	108.6°	109.5°
C10A	N1	C7	130.2°	120.0°
C10A	N1	H1	114.9°	120.0°
N1	C7	C8	111.5°	109.5°
C7	N1	H1	114.9°	120.0°
N1	C7	H7	107.4°	109.4°
C7	C8	O8	108.0°	109.5°
C7	C8	C9	114.3°	109.5°
C8	C7	H7	106.8°	109.5°
C7	C8	H8	107.6°	109.5°
O8	C8	C9	109.9°	109.5°
O8	C8	H8	109.1°	109.4°
C8	O8	HO8	109.5°	113.9°
C9	C8	H8	107.8°	109.5°
C8	C9	H92	109.5°	109.5°
C8	C9	H91	109.5°	109.4°
C8	C9	H6A	109.5°	109.4°
H92	C9	H91	109.5°	109.5°
H92	C9	H6A	109.5°	109.5°
H91	C9	H6A	109.4°	109.5°
H32	C3	H31	109.5°	109.5°
C2	O2	HO2	109.5°	113.9°
H17	C11A	H18	109.5°	109.4°
H17	C11A	H19	109.5°	109.5°
H18	C11A	H19	109.5°	109.5°
H111	C11	H113	109.4°	109.5°
H111	C11	H112	109.5°	109.4°
H113	C11	H112	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C4	C3	C5	121.5°	119.8°
O4	C4	C3	H4	119.6°	120.3°
O4	C4	C5	H4	119.5°	120.3°
O4	C4	C5	N5	53.5°	56.9°
O4	C4	C3	C2	176.8°	176.9°
O4	C4	C5	C6	176.0°	176.8°
O4	C4	C5	H5	65.8°	63.2°
O4	C4	C3	H32	62.8°	63.3°
O4	C4	C3	H31	56.4°	56.9°
C11	C10	O10	N5	179.5°	179.9°
C11	C10	N5	C5	178.3°	180.0°
C11	C10	N5	HN5	1.7°	0.0°
C10	C11	H111	H113	120.0°	120.1°
C10	C11	H111	H112	120.0°	119.9°
C10	C11	H113	H112	120.0°	120.0°
O10	C10	N5	C5	1.1°	0.0°
O10	C10	N5	HN5	178.9°	179.9°
O10	C10	C11	H111	0.0°	180.0°
O10	C10	C11	H113	120.0°	59.9°
O10	C10	C11	H112	120.0°	60.1°
C10	N5	C5	C4	112.6°	85.3°
C10	N5	C5	HN5	180.0°	180.0°
C10	N5	C5	C6	126.0°	155.0°
C10	N5	C5	H5	6.4°	34.9°
N5	C10	C11	H111	179.4°	0.1°
N5	C10	C11	H113	59.5°	120.0°
N5	C10	C11	H112	60.5°	120.0°
C3	C4	C5	H4	118.9°	119.9°
C3	C4	C5	N5	68.0°	62.9°
C4	C3	C2	H32	120.4°	119.9°
C4	C3	C2	H31	120.4°	120.0°
C3	C4	C5	C6	54.4°	57.0°
C4	C3	C2	C1	166.7°	177.6°
C4	C3	C2	O6	55.2°	57.6°
C3	C4	C5	H5	172.7°	176.9°
C3	C4	O4	HO4	180.0°	60.0°
C4	C3	H32	H31	118.8°	120.2°
C4	C3	C2	O2	72.1°	62.3°
C4	C5	N5	C6	121.4°	119.7°
C4	C5	N5	H5	119.0°	120.2°
C5	C4	C3	C2	55.3°	57.0°
C4	C5	C6	H5	118.2°	119.9°
C4	C5	C6	O6	56.1°	57.6°
C4	C5	C6	C7	176.9°	177.6°
C4	C5	C6	H6	61.7°	62.4°
C4	C5	N5	HN5	67.4°	94.7°
C5	C4	O4	HO4	57.5°	179.6°
C5	C4	C3	H32	175.7°	176.9°
C5	C4	C3	H31	65.1°	62.9°
N5	C5	C6	H5	120.0°	120.1°
N5	C5	C6	O6	65.7°	62.4°
N5	C5	C6	C7	55.1°	57.6°
N5	C5	C6	H6	176.5°	177.6°
N5	C5	C4	H4	173.1°	177.2°
C3	C2	C1	O6	111.8°	119.9°
C3	C2	C1	O2	120.9°	120.0°
C3	C2	O6	O2	119.8°	119.9°
C3	C2	C1	O1A	72.5°	125.0°
C3	C2	C1	O1B	107.3°	55.1°
C3	C2	O6	C6	64.8°	61.1°
C2	C3	C4	H4	63.6°	62.9°
C2	C3	H32	H31	118.8°	120.1°
C3	C2	O2	HO2	105.9°	180.0°
C5	C6	O6	C2	66.8°	61.1°
C5	C6	O6	C7	123.7°	120.0°
C5	C6	O6	H6	117.1°	120.0°
C5	C6	C7	H6	121.5°	120.0°
C5	C6	C7	N1	52.3°	59.7°
C5	C6	C7	C8	178.4°	179.7°
C5	C6	C7	H7	65.1°	60.2°
C6	C5	N5	HN5	54.0°	25.0°
C6	C5	C4	H4	64.5°	62.9°
C1	C2	O6	O2	120.0°	120.1°
C2	C1	O1A	O1B	179.8°	179.9°
C1	C2	O6	C6	174.9°	178.9°
C1	C2	C3	H32	72.9°	62.5°
C1	C2	C3	H31	46.3°	57.6°
C2	C1	O1B	HO1B	179.9°	180.0°
C1	C2	O2	HO2	19.4°	59.9°
O6	C2	C1	O1A	175.7°	5.1°
O6	C2	C1	O1B	4.5°	175.0°
C2	O6	C6	C7	169.5°	178.9°
C2	O6	C6	H6	50.3°	58.8°
O6	C2	C3	H32	175.7°	177.5°
O6	C2	C3	H31	65.1°	62.4°
O6	C2	O2	HO2	136.6°	60.1°
O1A	C1	C2	O2	48.4°	115.0°
O1A	C1	O1B	HO1B	0.0°	0.1°
O1B	C1	C2	O2	131.8°	65.0°
O10A	C10A	C11A	N1	176.2°	180.0°
O10A	C10A	N1	C7	9.3°	0.0°
O10A	C10A	N1	H1	170.7°	179.8°
O10A	C10A	C11A	H17	0.0°	179.9°
O10A	C10A	C11A	H18	120.0°	60.0°
O10A	C10A	C11A	H19	120.0°	60.0°
C11A	C10A	N1	C7	174.6°	180.0°
C11A	C10A	N1	H1	5.4°	0.3°
C10A	C11A	H17	H18	120.0°	119.9°
C10A	C11A	H17	H19	120.0°	120.1°
C10A	C11A	H18	H19	120.0°	120.0°
O6	C6	C7	H6	119.9°	120.1°
O6	C6	C7	N1	171.0°	179.7°
O6	C6	C7	C8	62.9°	60.3°
O6	C6	C7	H7	53.5°	59.7°
O6	C6	C5	H5	174.3°	177.5°
C6	O6	C2	O2	54.9°	58.8°
C6	C7	N1	C10A	118.2°	154.7°
C6	C7	N1	C8	126.3°	120.0°
C6	C7	N1	H7	117.1°	120.0°
C6	C7	C8	H7	116.5°	120.0°
C6	C7	C8	O8	166.2°	174.2°
C6	C7	C8	C9	71.2°	65.8°
C6	C7	N1	H1	61.8°	25.0°
C6	C7	C8	H8	48.6°	54.2°
C7	C6	C5	H5	64.9°	62.5°
C10A	N1	C7	H1	180.0°	179.8°
C10A	N1	C7	C8	115.5°	85.3°
C10A	N1	C7	H7	1.1°	34.8°
N1	C10A	C11A	H17	176.2°	0.0°
N1	C10A	C11A	H18	63.8°	120.0°
N1	C10A	C11A	H19	56.2°	120.0°
N1	C7	C8	H7	117.0°	120.0°
N1	C7	C8	O8	67.3°	65.8°
N1	C7	C8	C9	55.4°	54.2°
N1	C7	C8	H8	175.1°	174.2°
N1	C7	C6	H6	69.2°	60.3°
C7	C8	O8	C9	125.3°	120.1°
C7	C8	O8	H8	116.7°	120.0°
C7	C8	C9	H8	119.7°	120.0°
C8	C7	N1	H1	64.5°	95.0°
C7	C8	C9	H92	180.0°	60.0°
C7	C8	C9	H91	60.0°	180.0°
C7	C8	C9	H6A	60.0°	60.0°
C7	C8	O8	HO8	180.0°	57.4°
C8	C7	C6	H6	57.0°	59.7°
O8	C8	C9	H8	118.7°	120.0°
O8	C8	C7	H7	49.7°	54.2°
O8	C8	C9	H92	58.4°	180.0°
O8	C8	C9	H91	61.6°	59.9°
O8	C8	C9	H6A	178.4°	60.0°
C9	C8	C7	H7	172.4°	174.2°
C8	C9	H92	H91	120.0°	120.0°
C8	C9	H92	H6A	120.0°	120.0°
C8	C9	H91	H6A	120.0°	119.9°
C9	C8	O8	HO8	54.7°	177.5°
H1	N1	C7	H7	178.9°	145.0°
H7	C7	C8	H8	67.9°	65.8°
H7	C7	C6	H6	173.4°	179.8°
H8	C8	C9	H92	60.3°	60.0°
H8	C8	C9	H91	179.7°	60.0°
H8	C8	C9	H6A	59.7°	180.0°
H8	C8	O8	HO8	63.3°	62.5°
H92	C9	H91	H6A	120.0°	120.0°
H6	C6	C5	H5	56.5°	57.5°
H5	C5	N5	HN5	173.7°	145.2°
H5	C5	C4	H4	53.7°	57.0°
H4	C4	O4	HO4	61.2°	60.2°
H4	C4	C3	H32	56.8°	57.0°
H4	C4	C3	H31	176.0°	177.2°
H32	C3	C2	O2	48.3°	57.6°
H31	C3	C2	O2	167.5°	177.7°
H17	C11A	H18	H19	120.0°	120.0°
H111	C11	H113	H112	120.0°	119.9°

Release date:	2017-03-08
Definition date:	2016-05-19
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	5JSE