6OP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C4	doub	1.22Å	1.25Å
N3	C4	sing	1.35Å	1.35Å
N3	C2	sing	1.35Å	1.34Å
O2	C2	doub	1.22Å	1.20Å
C4	C5	sing	1.42Å	1.39Å
C2	N1	sing	1.35Å	1.34Å
C5	C7	sing	1.51Å	1.55Å
C5	C6	doub	1.35Å	1.40Å
N1	C6	sing	1.37Å	1.37Å
N1	C1'	sing	1.47Å	1.51Å
C1'	O4'	sing	1.44Å	1.52Å
C1'	C2'	sing	1.54Å	1.23Å
CB'	CG'	sing	1.53Å	1.55Å
CB'	O2'	sing	1.43Å	1.44Å
O4'	C4'	sing	1.44Å	1.53Å
CG'	OD'	sing	1.43Å	1.45Å
C2'	O2'	sing	1.43Å	1.44Å
C2'	C3'	sing	1.55Å	1.64Å
C4'	C3'	sing	1.55Å	1.23Å
C4'	C5'	sing	1.51Å	1.60Å
O3'	C3'	sing	1.43Å	1.44Å
OD'	CE'	sing	1.43Å	1.42Å
C6'	C5'	doub	1.31Å	1.53Å
C6'	P	sing	1.81Å	1.78Å
OP2	P	doub	1.48Å	1.48Å
P	OP1	sing	1.61Å	1.60Å
P	OP3	sing	1.61Å	1.54Å
OP1	H1	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å
C6'	H6'	sing	1.08Å	1.08Å
C5'	H5'	sing	1.08Å	1.08Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
CB'	H12	sing	1.09Å	1.10Å
CB'	H13	sing	1.09Å	1.10Å
CG'	H14	sing	1.09Å	1.10Å
CG'	H15	sing	1.09Å	1.10Å
CE'	H16	sing	1.09Å	1.10Å
CE'	H17	sing	1.09Å	1.10Å
CE'	H18	sing	1.09Å	1.10Å
N3	H3	sing	0.97Å	1.00Å
C7	H20	sing	1.09Å	1.10Å
C7	H21	sing	1.09Å	1.10Å
C7	H22	sing	1.09Å	1.10Å
C6	H6	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4	C4	N3	120.9°	120.3°
O4	C4	C5	118.0°	120.3°
C4	N3	C2	119.7°	120.3°
N3	C4	C5	121.1°	119.4°
C4	N3	H3	120.2°	119.9°
N3	C2	O2	118.2°	119.6°
N3	C2	N1	122.0°	120.9°
C2	N3	H3	120.2°	119.8°
O2	C2	N1	119.8°	119.5°
C4	C5	C7	120.9°	120.4°
C4	C5	C6	117.7°	119.1°
C2	N1	C6	120.0°	120.6°
C2	N1	C1'	119.9°	119.7°
C7	C5	C6	121.4°	120.5°
C5	C7	H20	109.5°	109.4°
C5	C7	H21	109.4°	109.5°
C5	C7	H22	109.5°	109.4°
C5	C6	N1	119.5°	119.7°
C5	C6	H6	120.2°	120.2°
C6	N1	C1'	120.1°	119.7°
N1	C6	H6	120.2°	120.1°
N1	C1'	O4'	106.5°	110.3°
N1	C1'	C2'	113.5°	110.4°
N1	C1'	H1'	110.3°	110.4°
O4'	C1'	C2'	100.3°	104.8°
C1'	O4'	C4'	105.1°	105.3°
O4'	C1'	H1'	110.2°	110.4°
C1'	C2'	O2'	113.5°	110.5°
C1'	C2'	C3'	104.0°	104.1°
C1'	C2'	H2'	112.9°	110.6°
C2'	C1'	H1'	115.1°	110.4°
CG'	CB'	O2'	109.8°	109.5°
CB'	CG'	OD'	106.2°	109.5°
CG'	CB'	H12	109.4°	109.5°
CG'	CB'	H13	109.4°	109.5°
CB'	CG'	H14	110.3°	109.4°
CB'	CG'	H15	110.3°	109.4°
CB'	O2'	C2'	116.4°	114.0°
O2'	CB'	H12	109.4°	109.4°
O2'	CB'	H13	109.4°	109.5°
O4'	C4'	C3'	105.6°	104.8°
O4'	C4'	C5'	110.7°	110.4°
O4'	C4'	H4'	108.2°	110.5°
CG'	OD'	CE'	115.6°	114.0°
OD'	CG'	H14	110.3°	109.5°
OD'	CG'	H15	110.3°	109.5°
O2'	C2'	C3'	109.7°	110.5°
O2'	C2'	H2'	109.5°	110.5°
C2'	C3'	C4'	105.4°	104.0°
C2'	C3'	O3'	111.1°	110.6°
C2'	C3'	H3'	107.4°	110.5°
C3'	C2'	H2'	107.0°	110.5°
C3'	C4'	C5'	111.9°	110.4°
C4'	C3'	O3'	109.3°	110.5°
C3'	C4'	H4'	113.0°	110.3°
C4'	C3'	H3'	113.6°	110.5°
C4'	C5'	C6'	109.0°	120.0°
C4'	C5'	H5'	125.5°	120.0°
C5'	C4'	H4'	107.5°	110.3°
O3'	C3'	H3'	109.9°	110.5°
C3'	O3'	HO3'	109.5°	113.9°
OD'	CE'	H16	109.5°	109.5°
OD'	CE'	H17	109.5°	109.5°
OD'	CE'	H18	109.5°	109.5°
C5'	C6'	P	114.5°	120.0°
C5'	C6'	H6'	122.8°	120.0°
C6'	C5'	H5'	125.5°	120.0°
C6'	P	OP2	108.8°	109.5°
C6'	P	OP1	109.3°	109.5°
C6'	P	OP3	111.6°	109.5°
P	C6'	H6'	122.8°	120.0°
OP2	P	OP1	111.1°	109.5°
OP2	P	OP3	106.7°	109.5°
OP1	P	OP3	109.2°	109.5°
P	OP1	H1	109.5°	114.0°
P	OP3	HOP3	109.5°	114.0°
H12	CB'	H13	109.5°	109.4°
H14	CG'	H15	109.5°	109.5°
H16	CE'	H17	109.5°	109.4°
H16	CE'	H18	109.4°	109.5°
H17	CE'	H18	109.5°	109.5°
H20	C7	H21	109.4°	109.5°
H20	C7	H22	109.5°	109.5°
H21	C7	H22	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C4	N3	C5	179.9°	180.0°
O4	C4	N3	C2	179.9°	179.9°
O4	C4	C5	C7	0.3°	0.0°
O4	C4	C5	C6	179.8°	179.9°
O4	C4	N3	H3	0.1°	0.0°
C4	N3	C2	H3	180.0°	179.9°
C4	N3	C2	O2	179.8°	179.9°
C4	N3	C2	N1	0.5°	0.1°
N3	C4	C5	C7	179.9°	179.9°
N3	C4	C5	C6	0.1°	0.1°
N3	C2	O2	N1	179.4°	180.0°
C2	N3	C4	C5	0.0°	0.1°
N3	C2	N1	C6	1.0°	0.1°
N3	C2	N1	C1'	179.4°	179.7°
O2	C2	N1	C6	179.6°	179.9°
O2	C2	N1	C1'	1.2°	0.3°
O2	C2	N3	H3	0.2°	0.0°
C4	C5	C7	C6	180.0°	180.0°
C4	C5	C6	N1	0.7°	0.1°
C5	C4	N3	H3	180.0°	180.0°
C4	C5	C7	H20	180.0°	0.0°
C4	C5	C7	H21	60.0°	120.0°
C4	C5	C7	H22	60.0°	120.0°
C4	C5	C6	H6	179.3°	179.7°
C2	N1	C6	C5	1.1°	0.1°
C2	N1	C6	C1'	178.4°	179.6°
C2	N1	C1'	O4'	114.9°	53.9°
C2	N1	C1'	C2'	135.6°	61.5°
C2	N1	C1'	H1'	4.7°	176.2°
N1	C2	N3	H3	179.5°	180.0°
C2	N1	C6	H6	178.9°	179.7°
C7	C5	C6	N1	179.3°	179.9°
C5	C7	H20	H21	120.0°	120.0°
C5	C7	H20	H22	120.0°	120.0°
C5	C7	H21	H22	120.0°	120.0°
C7	C5	C6	H6	0.7°	0.2°
C5	C6	N1	H6	180.0°	179.8°
C5	C6	N1	C1'	179.5°	179.7°
C6	C5	C7	H20	0.0°	180.0°
C6	C5	C7	H21	120.0°	60.0°
C6	C5	C7	H22	120.0°	60.0°
C6	N1	C1'	O4'	63.4°	126.5°
C6	N1	C1'	C2'	46.0°	118.1°
C6	N1	C1'	H1'	177.0°	4.2°
N1	C1'	O4'	C2'	118.5°	118.9°
N1	C1'	O4'	H1'	119.6°	122.2°
N1	C1'	C2'	H1'	128.5°	122.3°
N1	C1'	O4'	C4'	152.8°	159.4°
N1	C1'	C2'	O2'	85.6°	98.6°
N1	C1'	C2'	C3'	155.3°	142.8°
N1	C1'	C2'	H2'	39.7°	24.1°
C1'	N1	C6	H6	0.5°	0.1°
O4'	C1'	C2'	H1'	118.3°	118.9°
O4'	C1'	C2'	O2'	161.1°	142.6°
O4'	C1'	C2'	C3'	42.0°	24.0°
C1'	O4'	C4'	C3'	6.8°	40.5°
C1'	O4'	C4'	C5'	128.1°	159.3°
C1'	O4'	C4'	H4'	114.4°	78.4°
O4'	C1'	C2'	H2'	73.6°	94.7°
C1'	C2'	O2'	CB'	59.8°	153.9°
C2'	C1'	O4'	C4'	34.3°	40.5°
C1'	C2'	O2'	C3'	115.7°	114.6°
C1'	C2'	O2'	H2'	127.1°	122.8°
C1'	C2'	C3'	H2'	119.7°	118.8°
C1'	C2'	C3'	C4'	42.1°	0.0°
C1'	C2'	C3'	O3'	76.3°	118.7°
C1'	C2'	C3'	H3'	163.5°	118.6°
CG'	CB'	O2'	H12	120.0°	120.0°
CG'	CB'	O2'	H13	120.1°	120.1°
CB'	CG'	OD'	H14	119.5°	120.0°
CB'	CG'	OD'	H15	119.5°	120.0°
CG'	CB'	O2'	C2'	74.8°	180.0°
CB'	CG'	OD'	CE'	144.5°	180.0°
CG'	CB'	H12	H13	119.9°	120.0°
CB'	CG'	H14	H15	121.5°	119.9°
O2'	CB'	CG'	OD'	63.3°	65.0°
CB'	O2'	C2'	C3'	175.5°	91.5°
CB'	O2'	C2'	H2'	67.4°	31.2°
O2'	CB'	H12	H13	119.8°	120.0°
O2'	CB'	CG'	H14	177.2°	175.0°
O2'	CB'	CG'	H15	56.2°	55.0°
O4'	C4'	C3'	C2'	16.4°	24.0°
O4'	C4'	C3'	C5'	120.5°	118.9°
O4'	C4'	C3'	H4'	118.1°	119.0°
O4'	C4'	C5'	H4'	118.0°	122.4°
O4'	C4'	C3'	O3'	103.1°	142.7°
O4'	C4'	C5'	C6'	95.0°	9.6°
O4'	C4'	C5'	H5'	85.1°	170.3°
O4'	C4'	C3'	H3'	133.8°	94.6°
C4'	O4'	C1'	H1'	87.6°	78.4°
OD'	CG'	CB'	H12	176.6°	54.9°
OD'	CG'	CB'	H13	56.7°	174.9°
OD'	CG'	H14	H15	121.5°	120.0°
CG'	OD'	CE'	H16	180.0°	60.0°
CG'	OD'	CE'	H17	60.0°	179.9°
CG'	OD'	CE'	H18	60.0°	60.0°
O2'	C2'	C3'	H2'	118.7°	122.6°
O2'	C2'	C3'	C4'	163.7°	118.6°
O2'	C2'	C3'	O3'	45.4°	0.1°
O2'	C2'	C3'	H3'	74.8°	122.8°
O2'	C2'	C1'	H1'	42.8°	23.7°
C2'	O2'	CB'	H12	45.2°	60.0°
C2'	O2'	CB'	H13	165.1°	60.0°
C2'	C3'	C4'	O3'	119.6°	118.7°
C2'	C3'	C4'	H3'	117.3°	118.6°
C2'	C3'	C4'	C5'	104.0°	142.8°
C2'	C3'	O3'	H3'	118.7°	122.7°
C2'	C3'	C4'	H4'	134.5°	95.0°
C2'	C3'	O3'	HO3'	180.0°	176.2°
C3'	C2'	C1'	H1'	76.2°	94.9°
C3'	C4'	C5'	H4'	124.5°	122.2°
C4'	C3'	O3'	H3'	125.3°	122.6°
C3'	C4'	C5'	C6'	147.6°	125.0°
C3'	C4'	C5'	H5'	32.4°	54.9°
C4'	C3'	O3'	HO3'	64.1°	61.5°
C4'	C3'	C2'	H2'	77.6°	118.8°
C5'	C4'	C3'	O3'	136.4°	98.4°
C4'	C5'	C6'	H5'	180.0°	179.9°
C4'	C5'	C6'	P	175.6°	180.0°
C4'	C5'	C6'	H6'	4.4°	0.1°
C5'	C4'	C3'	H3'	13.3°	24.2°
O3'	C3'	C4'	H4'	15.0°	23.7°
O3'	C3'	C2'	H2'	164.0°	122.5°
CE'	OD'	CG'	H14	96.0°	60.0°
CE'	OD'	CG'	H15	25.0°	60.0°
OD'	CE'	H16	H17	120.0°	120.0°
OD'	CE'	H16	H18	120.0°	120.0°
OD'	CE'	H17	H18	120.0°	120.1°
C5'	C6'	P	H6'	180.0°	179.9°
C5'	C6'	P	OP2	157.8°	120.0°
C5'	C6'	P	OP1	36.3°	0.1°
C5'	C6'	P	OP3	84.7°	120.0°
C6'	C5'	C4'	H4'	23.1°	112.8°
C6'	P	OP2	OP1	120.4°	120.0°
C6'	P	OP2	OP3	120.6°	120.0°
C6'	P	OP1	OP3	122.4°	120.0°
C6'	P	OP1	H1	120.1°	60.0°
C6'	P	OP3	HOP3	118.7°	179.9°
P	C6'	C5'	H5'	4.3°	0.1°
OP2	P	OP1	OP3	117.5°	120.0°
OP2	P	OP1	H1	0.0°	180.0°
OP2	P	OP3	HOP3	0.0°	60.0°
OP2	P	C6'	H6'	22.2°	60.0°
OP1	P	OP3	HOP3	120.3°	60.0°
OP1	P	C6'	H6'	143.7°	180.0°
OP3	P	OP1	H1	117.5°	60.0°
OP3	P	C6'	H6'	95.3°	60.0°
H6'	C6'	C5'	H5'	175.7°	180.0°
H5'	C5'	C4'	H4'	156.9°	67.3°
H4'	C4'	C3'	H3'	108.1°	146.4°
H3'	C3'	O3'	HO3'	61.2°	61.1°
H3'	C3'	C2'	H2'	43.8°	0.2°
H2'	C2'	C1'	H1'	168.1°	146.4°
H12	CB'	CG'	H14	57.2°	65.0°
H12	CB'	CG'	H15	63.9°	175.0°
H13	CB'	CG'	H14	62.7°	55.0°
H13	CB'	CG'	H15	176.2°	65.0°
H16	CE'	H17	H18	120.0°	120.0°
H20	C7	H21	H22	120.0°	120.1°

Release date:	2016-07-20
Definition date:	2016-05-13
Last modified:	2016-07-15
Release status:	REL
Processing site:	RCSB
Derived from:	5JS2