6NW
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | SP1 | sing | 2.12Å | 1.96Å | |
| P | OP2 | doub | 1.48Å | 1.51Å | |
| P | O5' | sing | 1.61Å | 1.49Å | |
| O5' | C5' | sing | 1.43Å | 1.35Å | |
| C5' | C4' | sing | 1.53Å | 1.56Å | |
| C4' | O4' | sing | 1.44Å | 1.27Å | |
| C4' | C3' | sing | 1.54Å | 1.49Å | |
| O4' | C1' | sing | 1.44Å | 1.60Å | |
| C3' | O3' | sing | 1.43Å | 1.30Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C2' | O2' | sing | 1.43Å | 1.46Å | |
| C2' | C1' | sing | 1.55Å | 1.26Å | |
| O2' | CM' | sing | 1.43Å | 1.37Å | |
| C1' | N9 | sing | 1.46Å | 1.43Å | |
| N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.41Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.45Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.36Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.43Å | |
| C6 | N1 | sing | 1.33Å | 1.39Å | Aromatic |
| N1 | C2 | doub | 1.32Å | 1.31Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.35Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.42Å | Aromatic |
| SP1 | H1 | sing | 1.34Å | 1.30Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C1' | H7 | sing | 1.09Å | 1.10Å | |
| CM' | H11 | sing | 1.09Å | 1.10Å | |
| CM' | H9 | sing | 1.09Å | 1.10Å | |
| CM' | H10 | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N6 | H61 | sing | 0.97Å | 1.00Å | |
| N6 | H62 | sing | 0.97Å | 1.00Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| P | OP3 | sing | 1.61Å | 1.55Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| SP1 | P | OP2 | 105.5° | 109.5° |
| SP1 | P | O5' | 106.1° | 109.5° |
| P | SP1 | H1 | 102.0° | 103.0° |
| SP1 | P | OP3 | 123.9° | 109.5° |
| OP2 | P | O5' | 111.0° | 109.5° |
| OP2 | P | OP3 | 107.8° | 109.5° |
| P | O5' | C5' | 110.4° | 123.0° |
| O5' | P | OP3 | 102.3° | 109.5° |
| O5' | C5' | C4' | 106.5° | 109.5° |
| O5' | C5' | H5'' | 110.2° | 109.4° |
| O5' | C5' | H5' | 110.2° | 109.4° |
| C5' | C4' | O4' | 111.8° | 109.9° |
| C5' | C4' | C3' | 105.1° | 109.9° |
| C4' | C5' | H5'' | 110.2° | 109.5° |
| C5' | C4' | H4' | 109.2° | 109.8° |
| C4' | C5' | H5' | 110.2° | 109.5° |
| O4' | C4' | C3' | 106.2° | 107.3° |
| C4' | O4' | C1' | 108.6° | 106.9° |
| O4' | C4' | H4' | 113.8° | 109.9° |
| C4' | C3' | O3' | 103.9° | 110.5° |
| C4' | C3' | C2' | 104.6° | 104.2° |
| C3' | C4' | H4' | 110.2° | 110.0° |
| C4' | C3' | H3' | 109.9° | 110.6° |
| O4' | C1' | C2' | 105.2° | 103.5° |
| O4' | C1' | N9 | 106.3° | 110.6° |
| O4' | C1' | H7 | 109.7° | 110.6° |
| O3' | C3' | C2' | 115.7° | 110.4° |
| O3' | C3' | H3' | 112.9° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C2' | O2' | 108.4° | 110.9° |
| C3' | C2' | C1' | 103.4° | 102.1° |
| C2' | C3' | H3' | 109.3° | 110.6° |
| C3' | C2' | H2' | 109.9° | 110.9° |
| O2' | C2' | C1' | 109.3° | 110.9° |
| C2' | O2' | CM' | 110.8° | 114.0° |
| O2' | C2' | H2' | 110.9° | 110.8° |
| C2' | C1' | N9 | 107.6° | 110.6° |
| C1' | C2' | H2' | 114.5° | 110.9° |
| C2' | C1' | H7 | 115.4° | 110.7° |
| O2' | CM' | H11 | 109.5° | 109.5° |
| O2' | CM' | H9 | 109.4° | 109.5° |
| O2' | CM' | H10 | 109.5° | 109.5° |
| C1' | N9 | C8 | 124.8° | 126.3° |
| C1' | N9 | C4 | 126.6° | 126.3° |
| N9 | C1' | H7 | 112.1° | 110.6° |
| C8 | N9 | C4 | 108.6° | 107.4° |
| N9 | C8 | N7 | 110.0° | 110.0° |
| N9 | C8 | H8 | 125.0° | 124.9° |
| N9 | C4 | C5 | 105.3° | 106.0° |
| N9 | C4 | N3 | 133.5° | 134.9° |
| C8 | N7 | C5 | 107.7° | 109.4° |
| N7 | C8 | H8 | 125.0° | 125.0° |
| N7 | C5 | C6 | 136.3° | 134.7° |
| N7 | C5 | C4 | 108.4° | 107.1° |
| C6 | C5 | C4 | 115.3° | 118.2° |
| C5 | C6 | N6 | 118.2° | 120.7° |
| C5 | C6 | N1 | 120.1° | 118.5° |
| C5 | C4 | N3 | 121.1° | 119.1° |
| N6 | C6 | N1 | 121.7° | 120.8° |
| C6 | N6 | H61 | 109.5° | 120.0° |
| C6 | N6 | H62 | 109.5° | 120.0° |
| C6 | N1 | C2 | 122.9° | 121.2° |
| N1 | C2 | N3 | 119.0° | 122.5° |
| N1 | C2 | H2 | 120.5° | 118.8° |
| C2 | N3 | C4 | 121.6° | 120.6° |
| N3 | C2 | H2 | 120.5° | 118.8° |
| H5'' | C5' | H5' | 109.4° | 109.5° |
| H11 | CM' | H9 | 109.5° | 109.5° |
| H11 | CM' | H10 | 109.5° | 109.4° |
| H9 | CM' | H10 | 109.5° | 109.5° |
| H61 | N6 | H62 | 109.4° | 120.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| SP1 | P | OP2 | O5' | 114.5° | 120.0° |
| SP1 | P | OP2 | OP3 | 134.2° | 120.0° |
| SP1 | P | O5' | OP3 | 131.1° | 120.0° |
| SP1 | P | O5' | C5' | 65.4° | 65.0° |
| SP1 | P | OP3 | HOP3 | 123.7° | 60.0° |
| OP2 | P | O5' | OP3 | 114.8° | 120.0° |
| OP2 | P | O5' | C5' | 48.7° | 55.0° |
| OP2 | P | SP1 | H1 | 0.0° | 60.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 180.0° |
| P | O5' | C5' | C4' | 169.4° | 180.0° |
| O5' | P | SP1 | H1 | 117.8° | 180.0° |
| P | O5' | C5' | H5'' | 49.8° | 60.0° |
| P | O5' | C5' | H5' | 71.1° | 60.0° |
| O5' | P | OP3 | HOP3 | 117.1° | 60.0° |
| O5' | C5' | C4' | H5'' | 119.6° | 120.0° |
| O5' | C5' | C4' | H5' | 119.6° | 120.0° |
| O5' | C5' | C4' | O4' | 50.3° | 66.4° |
| O5' | C5' | C4' | C3' | 165.2° | 175.7° |
| O5' | C5' | H5'' | H5' | 121.4° | 119.9° |
| O5' | C5' | C4' | H4' | 76.6° | 54.5° |
| C5' | O5' | P | OP3 | 163.6° | 175.0° |
| C5' | C4' | O4' | C3' | 114.2° | 119.4° |
| C5' | C4' | O4' | H4' | 124.4° | 121.0° |
| C5' | C4' | C3' | H4' | 117.6° | 121.1° |
| C5' | C4' | O4' | C1' | 113.3° | 146.0° |
| C5' | C4' | C3' | O3' | 101.7° | 119.9° |
| C5' | C4' | C3' | C2' | 136.6° | 121.5° |
| C4' | C5' | H5'' | H5' | 121.3° | 120.1° |
| C5' | C4' | C3' | H3' | 19.4° | 2.7° |
| O4' | C4' | C3' | H4' | 123.7° | 119.5° |
| O4' | C4' | C3' | O3' | 139.6° | 120.7° |
| O4' | C4' | C3' | C2' | 17.9° | 2.1° |
| C4' | O4' | C1' | C2' | 23.8° | 40.1° |
| C4' | O4' | C1' | N9 | 90.2° | 158.6° |
| O4' | C4' | C5' | H5'' | 69.2° | 53.5° |
| O4' | C4' | C3' | H3' | 99.3° | 116.8° |
| C4' | O4' | C1' | H7 | 148.4° | 78.5° |
| O4' | C4' | C5' | H5' | 169.9° | 173.5° |
| C3' | C4' | O4' | C1' | 0.9° | 26.6° |
| C4' | C3' | O3' | C2' | 114.0° | 114.7° |
| C4' | C3' | O3' | H3' | 119.0° | 122.6° |
| C4' | C3' | C2' | H3' | 117.6° | 118.8° |
| C4' | C3' | C2' | O2' | 82.4° | 139.0° |
| C4' | C3' | C2' | C1' | 33.6° | 20.9° |
| C3' | C4' | C5' | H5'' | 45.6° | 64.3° |
| C4' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C4' | C3' | C2' | H2' | 156.2° | 97.4° |
| C3' | C4' | C5' | H5' | 75.3° | 55.7° |
| O4' | C1' | C2' | C3' | 32.8° | 37.0° |
| O4' | C1' | C2' | O2' | 82.5° | 155.2° |
| O4' | C1' | C2' | N9 | 113.0° | 118.5° |
| O4' | C1' | C2' | H7 | 121.1° | 118.5° |
| O4' | C1' | N9 | H7 | 119.9° | 123.0° |
| O4' | C1' | N9 | C8 | 19.3° | 23.6° |
| O4' | C1' | N9 | C4 | 161.3° | 156.8° |
| C1' | O4' | C4' | H4' | 122.3° | 93.1° |
| O4' | C1' | C2' | H2' | 152.3° | 81.2° |
| O3' | C3' | C2' | H3' | 128.8° | 122.5° |
| O3' | C3' | C2' | O2' | 31.2° | 20.4° |
| O3' | C3' | C2' | C1' | 147.2° | 97.8° |
| O3' | C3' | C4' | H4' | 15.9° | 1.2° |
| O3' | C3' | C2' | H2' | 90.2° | 144.0° |
| C3' | C2' | O2' | C1' | 112.1° | 112.7° |
| C3' | C2' | O2' | H2' | 120.7° | 123.7° |
| C3' | C2' | C1' | H2' | 119.5° | 118.2° |
| C3' | C2' | O2' | CM' | 165.5° | 91.5° |
| C3' | C2' | C1' | N9 | 80.3° | 155.5° |
| C2' | C3' | C4' | H4' | 105.8° | 117.5° |
| C2' | C3' | O3' | HO3' | 66.0° | 176.2° |
| C3' | C2' | C1' | H7 | 153.8° | 81.5° |
| O2' | C2' | C1' | H2' | 125.1° | 123.6° |
| O2' | C2' | C1' | N9 | 164.4° | 86.3° |
| O2' | C2' | C3' | H3' | 160.0° | 102.2° |
| O2' | C2' | C1' | H7 | 38.5° | 36.7° |
| C2' | O2' | CM' | H11 | 180.0° | 60.1° |
| C2' | O2' | CM' | H9 | 60.0° | 60.0° |
| C2' | O2' | CM' | H10 | 60.0° | 180.0° |
| C1' | C2' | O2' | CM' | 82.4° | 155.9° |
| C2' | C1' | N9 | H7 | 127.8° | 123.0° |
| C2' | C1' | N9 | C8 | 93.0° | 90.5° |
| C2' | C1' | N9 | C4 | 86.4° | 89.2° |
| C1' | C2' | C3' | H3' | 84.0° | 139.7° |
| CM' | O2' | C2' | H2' | 44.8° | 32.2° |
| O2' | CM' | H11 | H9 | 120.0° | 120.1° |
| O2' | CM' | H11 | H10 | 120.0° | 120.0° |
| O2' | CM' | H9 | H10 | 120.0° | 120.0° |
| C1' | N9 | C8 | C4 | 179.5° | 179.7° |
| C1' | N9 | C8 | N7 | 179.4° | 180.0° |
| C1' | N9 | C4 | C5 | 179.4° | 179.9° |
| C1' | N9 | C4 | N3 | 0.6° | 0.8° |
| N9 | C1' | C2' | H2' | 39.3° | 37.3° |
| C1' | N9 | C8 | H8 | 0.7° | 0.0° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.1° | 0.0° |
| C8 | N9 | C4 | C5 | 0.0° | 0.4° |
| C8 | N9 | C4 | N3 | 179.9° | 179.5° |
| C8 | N9 | C1' | H7 | 139.2° | 146.5° |
| C4 | N9 | C8 | N7 | 0.1° | 0.3° |
| N9 | C4 | C5 | N7 | 0.0° | 0.4° |
| N9 | C4 | C5 | C6 | 179.8° | 179.8° |
| N9 | C4 | C5 | N3 | 180.0° | 179.3° |
| N9 | C4 | N3 | C2 | 179.9° | 179.6° |
| C4 | N9 | C1' | H7 | 41.4° | 33.8° |
| C4 | N9 | C8 | H8 | 179.9° | 179.8° |
| C8 | N7 | C5 | C6 | 179.8° | 180.0° |
| C8 | N7 | C5 | C4 | 0.1° | 0.2° |
| N7 | C5 | C6 | C4 | 179.7° | 179.8° |
| N7 | C5 | C6 | N6 | 0.4° | 0.1° |
| N7 | C5 | C6 | N1 | 180.0° | 180.0° |
| N7 | C5 | C4 | N3 | 180.0° | 179.6° |
| C5 | N7 | C8 | H8 | 179.8° | 180.0° |
| C5 | C6 | N6 | N1 | 179.6° | 180.0° |
| C5 | C6 | N1 | C2 | 0.3° | 0.0° |
| C6 | C5 | C4 | N3 | 0.2° | 0.5° |
| C5 | C6 | N6 | H61 | 179.6° | 0.0° |
| C5 | C6 | N6 | H62 | 59.6° | 180.0° |
| C4 | C5 | C6 | N6 | 180.0° | 179.7° |
| C4 | C5 | C6 | N1 | 0.4° | 0.2° |
| C5 | C4 | N3 | C2 | 0.1° | 0.6° |
| N6 | C6 | N1 | C2 | 179.9° | 180.0° |
| C6 | N6 | H61 | H62 | 120.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.2° | 0.0° |
| N1 | C6 | N6 | H61 | 0.0° | 180.0° |
| N1 | C6 | N6 | H62 | 120.0° | 0.0° |
| C6 | N1 | C2 | H2 | 179.8° | 180.0° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.0° | 0.3° |
| C4 | N3 | C2 | H2 | 180.0° | 179.7° |
| H1 | SP1 | P | OP3 | 124.7° | 60.0° |
| H5'' | C5' | C4' | H4' | 163.8° | 174.5° |
| H4' | C4' | C3' | H3' | 137.0° | 123.7° |
| H4' | C4' | C5' | H5' | 43.0° | 65.5° |
| H3' | C3' | O3' | HO3' | 61.0° | 61.1° |
| H3' | C3' | C2' | H2' | 38.6° | 21.4° |
| H2' | C2' | C1' | H7 | 86.6° | 160.3° |
| H11 | CM' | H9 | H10 | 120.0° | 120.0° |
