6MY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| O4' | C4' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.53Å | 1.52Å | |
| C3' | C2' | sing | 1.53Å | 1.54Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C2' | C1' | sing | 1.53Å | 1.54Å | |
| O6' | C6' | sing | 1.43Å | 1.43Å | |
| C5' | C6' | sing | 1.53Å | 1.52Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C1' | O5' | sing | 1.43Å | 1.43Å | |
| C1' | C1 | sing | 1.51Å | 1.49Å | |
| N2 | C1 | doub | 1.31Å | 1.37Å | Aromatic |
| N2 | C3 | sing | 1.34Å | 1.35Å | Aromatic |
| C1 | N5 | sing | 1.35Å | 1.34Å | Aromatic |
| C3 | C4 | doub | 1.36Å | 1.37Å | Aromatic |
| N5 | C4 | sing | 1.38Å | 1.37Å | Aromatic |
| C4 | C6 | sing | 1.48Å | 1.49Å | |
| C6 | C7 | doub | 1.39Å | 1.40Å | Aromatic |
| C6 | C11 | sing | 1.40Å | 1.38Å | Aromatic |
| C7 | C8 | sing | 1.38Å | 1.40Å | Aromatic |
| C11 | C10 | doub | 1.38Å | 1.39Å | Aromatic |
| C8 | C9 | doub | 1.38Å | 1.40Å | Aromatic |
| C10 | C9 | sing | 1.38Å | 1.39Å | Aromatic |
| C8 | H1 | sing | 1.08Å | 1.08Å | |
| N5 | H2 | sing | 0.97Å | 1.00Å | |
| C9 | H3 | sing | 1.08Å | 1.08Å | |
| O6' | H4 | sing | 0.97Å | 0.95Å | |
| C6' | H5 | sing | 1.09Å | 1.10Å | |
| C6' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C4' | H8 | sing | 1.09Å | 1.10Å | |
| O4' | H9 | sing | 0.97Å | 0.95Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| O2' | H12 | sing | 0.97Å | 0.95Å | |
| C3' | H13 | sing | 1.09Å | 1.10Å | |
| O3' | H14 | sing | 0.97Å | 0.95Å | |
| C3 | H16 | sing | 1.08Å | 1.08Å | |
| C7 | H17 | sing | 1.08Å | 1.08Å | |
| C10 | H18 | sing | 1.08Å | 1.08Å | |
| C11 | H19 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 107.8° | 109.6° |
| O3' | C3' | C2' | 112.4° | 109.6° |
| O3' | C3' | H13 | 109.2° | 109.6° |
| C3' | O3' | H14 | 109.5° | 114.0° |
| O4' | C4' | C3' | 108.4° | 109.6° |
| O4' | C4' | C5' | 111.1° | 109.5° |
| O4' | C4' | H8 | 109.0° | 109.5° |
| C4' | O4' | H9 | 109.5° | 114.0° |
| C4' | C3' | C2' | 111.3° | 109.0° |
| C3' | C4' | C5' | 112.6° | 109.2° |
| C3' | C4' | H8 | 107.9° | 109.5° |
| C4' | C3' | H13 | 108.2° | 109.5° |
| C3' | C2' | O2' | 110.2° | 109.5° |
| C3' | C2' | C1' | 109.5° | 109.2° |
| C3' | C2' | H11 | 107.8° | 109.5° |
| C2' | C3' | H13 | 107.9° | 109.5° |
| C4' | C5' | C6' | 113.1° | 109.5° |
| C4' | C5' | O5' | 109.9° | 109.4° |
| C4' | C5' | H7 | 107.6° | 109.5° |
| C5' | C4' | H8 | 107.6° | 109.5° |
| O2' | C2' | C1' | 112.0° | 109.5° |
| O2' | C2' | H11 | 109.3° | 109.5° |
| C2' | O2' | H12 | 109.5° | 114.1° |
| C2' | C1' | O5' | 108.8° | 109.4° |
| C2' | C1' | C1 | 110.9° | 109.5° |
| C2' | C1' | H10 | 109.5° | 109.5° |
| C1' | C2' | H11 | 107.9° | 109.6° |
| O6' | C6' | C5' | 110.2° | 109.5° |
| C6' | O6' | H4 | 109.5° | 114.0° |
| O6' | C6' | H5 | 109.3° | 109.5° |
| O6' | C6' | H6 | 109.3° | 109.5° |
| C6' | C5' | O5' | 109.4° | 109.5° |
| C5' | C6' | H5 | 109.3° | 109.5° |
| C5' | C6' | H6 | 109.3° | 109.4° |
| C6' | C5' | H7 | 107.8° | 109.5° |
| C5' | O5' | C1' | 113.3° | 114.1° |
| O5' | C5' | H7 | 108.9° | 109.4° |
| O5' | C1' | C1 | 106.6° | 109.5° |
| O5' | C1' | H10 | 110.9° | 109.5° |
| C1' | C1 | N2 | 126.3° | 125.5° |
| C1' | C1 | N5 | 125.4° | 125.5° |
| C1 | C1' | H10 | 110.1° | 109.5° |
| C1 | N2 | C3 | 108.5° | 109.6° |
| N2 | C1 | N5 | 108.3° | 109.0° |
| N2 | C3 | C4 | 107.3° | 107.9° |
| N2 | C3 | H16 | 126.3° | 126.1° |
| C1 | N5 | C4 | 108.3° | 107.1° |
| C1 | N5 | H2 | 125.9° | 126.5° |
| C3 | C4 | N5 | 107.6° | 106.5° |
| C3 | C4 | C6 | 126.5° | 126.7° |
| C4 | C3 | H16 | 126.4° | 126.1° |
| N5 | C4 | C6 | 125.8° | 126.8° |
| C4 | N5 | H2 | 125.8° | 126.4° |
| C4 | C6 | C7 | 122.0° | 120.2° |
| C4 | C6 | C11 | 119.0° | 120.2° |
| C7 | C6 | C11 | 118.9° | 119.7° |
| C6 | C7 | C8 | 119.8° | 119.9° |
| C6 | C7 | H17 | 120.1° | 120.1° |
| C6 | C11 | C10 | 121.7° | 119.9° |
| C6 | C11 | H19 | 119.1° | 120.0° |
| C7 | C8 | C9 | 120.7° | 120.1° |
| C7 | C8 | H1 | 119.6° | 119.9° |
| C8 | C7 | H17 | 120.1° | 120.0° |
| C11 | C10 | C9 | 119.7° | 120.1° |
| C11 | C10 | H18 | 120.2° | 120.0° |
| C10 | C11 | H19 | 119.1° | 120.1° |
| C8 | C9 | C10 | 119.1° | 120.3° |
| C9 | C8 | H1 | 119.7° | 120.0° |
| C8 | C9 | H3 | 120.4° | 119.9° |
| C10 | C9 | H3 | 120.4° | 119.8° |
| C9 | C10 | H18 | 120.1° | 119.9° |
| H5 | C6' | H6 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | O4' | 64.9° | 63.2° |
| O3' | C3' | C4' | C2' | 123.7° | 119.9° |
| O3' | C3' | C4' | H13 | 118.0° | 120.3° |
| O3' | C3' | C2' | H13 | 120.4° | 120.3° |
| O3' | C3' | C4' | C5' | 171.8° | 176.9° |
| O3' | C3' | C2' | O2' | 63.6° | 63.2° |
| O3' | C3' | C2' | C1' | 172.8° | 176.9° |
| O3' | C3' | C4' | H8 | 53.1° | 56.9° |
| O3' | C3' | C2' | H11 | 55.6° | 56.9° |
| O4' | C4' | C3' | C5' | 123.4° | 120.0° |
| O4' | C4' | C3' | H8 | 118.0° | 120.1° |
| O4' | C4' | C3' | C2' | 171.4° | 176.9° |
| O4' | C4' | C5' | H8 | 119.3° | 120.1° |
| O4' | C4' | C5' | C6' | 64.8° | 62.4° |
| O4' | C4' | C5' | O5' | 172.6° | 177.6° |
| O4' | C4' | C5' | H7 | 54.1° | 57.6° |
| O4' | C4' | C3' | H13 | 53.1° | 57.1° |
| C4' | C3' | C2' | H13 | 118.5° | 119.8° |
| C3' | C4' | C5' | H8 | 118.8° | 119.9° |
| C4' | C3' | C2' | O2' | 175.4° | 176.9° |
| C4' | C3' | C2' | C1' | 51.7° | 56.9° |
| C3' | C4' | C5' | C6' | 173.3° | 177.6° |
| C3' | C4' | C5' | O5' | 50.7° | 57.5° |
| C3' | C4' | C5' | H7 | 67.8° | 62.4° |
| C3' | C4' | O4' | H9 | 180.0° | 60.3° |
| C4' | C3' | C2' | H11 | 65.4° | 63.0° |
| C4' | C3' | O3' | H14 | 180.0° | 180.0° |
| C2' | C3' | C4' | C5' | 48.1° | 56.9° |
| C3' | C2' | O2' | C1' | 122.2° | 119.8° |
| C3' | C2' | O2' | H11 | 118.3° | 120.1° |
| C3' | C2' | C1' | H11 | 117.1° | 119.9° |
| C3' | C2' | C1' | O5' | 59.0° | 57.6° |
| C3' | C2' | C1' | C1 | 175.9° | 177.6° |
| C2' | C3' | C4' | H8 | 70.6° | 63.0° |
| C3' | C2' | C1' | H10 | 62.4° | 62.4° |
| C3' | C2' | O2' | H12 | 180.0° | 60.2° |
| C2' | C3' | O3' | H14 | 57.0° | 60.4° |
| C4' | C5' | C6' | O6' | 49.1° | 175.0° |
| C4' | C5' | C6' | O5' | 122.9° | 120.0° |
| C4' | C5' | C6' | H7 | 118.8° | 120.0° |
| C4' | C5' | O5' | H7 | 117.7° | 120.0° |
| C4' | C5' | O5' | C1' | 60.3° | 61.1° |
| C4' | C5' | C6' | H5 | 71.0° | 64.9° |
| C4' | C5' | C6' | H6 | 169.2° | 55.0° |
| C5' | C4' | O4' | H9 | 55.7° | 180.0° |
| C5' | C4' | C3' | H13 | 70.3° | 62.9° |
| O2' | C2' | C1' | H11 | 120.3° | 120.1° |
| O2' | C2' | C1' | O5' | 178.4° | 177.6° |
| O2' | C2' | C1' | C1 | 61.5° | 62.4° |
| O2' | C2' | C1' | H10 | 60.2° | 57.6° |
| O2' | C2' | C3' | H13 | 56.9° | 57.1° |
| C2' | C1' | O5' | C5' | 65.3° | 61.1° |
| C2' | C1' | O5' | C1 | 119.7° | 120.0° |
| C2' | C1' | O5' | H10 | 120.5° | 120.0° |
| C2' | C1' | C1 | H10 | 121.3° | 120.1° |
| C2' | C1' | C1 | N2 | 38.7° | 54.9° |
| C2' | C1' | C1 | N5 | 143.5° | 125.0° |
| C1' | C2' | O2' | H12 | 57.8° | 180.0° |
| C1' | C2' | C3' | H13 | 66.8° | 62.8° |
| O6' | C6' | C5' | H5 | 120.1° | 120.0° |
| O6' | C6' | C5' | H6 | 120.1° | 120.0° |
| O6' | C6' | C5' | O5' | 73.8° | 65.0° |
| O6' | C6' | H5 | H6 | 119.6° | 120.0° |
| O6' | C6' | C5' | H7 | 167.9° | 55.0° |
| C6' | C5' | O5' | H7 | 117.6° | 120.0° |
| C6' | C5' | O5' | C1' | 175.0° | 178.8° |
| C5' | C6' | O6' | H4 | 180.0° | 180.0° |
| C5' | C6' | H5 | H6 | 119.7° | 119.9° |
| C6' | C5' | C4' | H8 | 54.5° | 57.7° |
| C5' | O5' | C1' | C1 | 175.1° | 178.9° |
| O5' | C5' | C6' | H5 | 166.1° | 55.1° |
| O5' | C5' | C6' | H6 | 46.3° | 175.0° |
| O5' | C5' | C4' | H8 | 68.1° | 62.3° |
| C5' | O5' | C1' | H10 | 55.2° | 58.9° |
| O5' | C1' | C1 | H10 | 120.4° | 120.0° |
| O5' | C1' | C1 | N2 | 79.6° | 65.1° |
| O5' | C1' | C1 | N5 | 98.2° | 115.0° |
| C1' | O5' | C5' | H7 | 57.3° | 58.9° |
| O5' | C1' | C2' | H11 | 58.1° | 62.3° |
| C1' | C1 | N2 | N5 | 178.1° | 179.9° |
| C1' | C1 | N2 | C3 | 178.4° | 180.0° |
| C1' | C1 | N5 | C4 | 176.8° | 180.0° |
| C1' | C1 | N5 | H2 | 3.1° | 0.2° |
| C1 | C1' | C2' | H11 | 58.8° | 57.7° |
| C1 | N2 | C3 | C4 | 1.8° | 0.0° |
| N2 | C1 | N5 | C4 | 1.3° | 0.0° |
| N2 | C1 | N5 | H2 | 178.7° | 179.7° |
| N2 | C1 | C1' | H10 | 160.0° | 175.0° |
| C1 | N2 | C3 | H16 | 178.2° | 180.0° |
| C3 | N2 | C1 | N5 | 0.3° | 0.0° |
| N2 | C3 | C4 | H16 | 180.0° | 179.9° |
| N2 | C3 | C4 | N5 | 2.6° | 0.0° |
| N2 | C3 | C4 | C6 | 178.2° | 179.8° |
| C1 | N5 | C4 | C3 | 2.4° | 0.0° |
| C1 | N5 | C4 | H2 | 180.0° | 179.7° |
| C1 | N5 | C4 | C6 | 178.1° | 179.8° |
| N5 | C1 | C1' | H10 | 22.2° | 5.0° |
| C3 | C4 | N5 | C6 | 175.7° | 179.8° |
| C3 | C4 | C6 | C7 | 8.3° | 0.3° |
| C3 | C4 | C6 | C11 | 173.8° | 179.5° |
| C3 | C4 | N5 | H2 | 177.6° | 179.7° |
| N5 | C4 | C6 | C7 | 166.7° | 179.9° |
| N5 | C4 | C6 | C11 | 11.3° | 0.3° |
| N5 | C4 | C3 | H16 | 177.5° | 180.0° |
| C4 | C6 | C7 | C11 | 177.9° | 179.8° |
| C4 | C6 | C7 | C8 | 176.6° | 179.7° |
| C4 | C6 | C11 | C10 | 177.0° | 179.7° |
| C6 | C4 | N5 | H2 | 1.9° | 0.1° |
| C6 | C4 | C3 | H16 | 1.8° | 0.2° |
| C4 | C6 | C7 | H17 | 3.4° | 0.2° |
| C4 | C6 | C11 | H19 | 3.0° | 0.2° |
| C6 | C7 | C8 | H17 | 180.0° | 179.9° |
| C7 | C6 | C11 | C10 | 1.0° | 0.1° |
| C6 | C7 | C8 | C9 | 1.8° | 0.1° |
| C6 | C7 | C8 | H1 | 178.3° | 180.0° |
| C7 | C6 | C11 | H19 | 179.0° | 180.0° |
| C11 | C6 | C7 | C8 | 1.3° | 0.1° |
| C6 | C11 | C10 | H19 | 180.0° | 179.9° |
| C6 | C11 | C10 | C9 | 1.0° | 0.1° |
| C11 | C6 | C7 | H17 | 178.7° | 180.0° |
| C6 | C11 | C10 | H18 | 179.0° | 180.0° |
| C7 | C8 | C9 | H1 | 180.0° | 179.9° |
| C7 | C8 | C9 | C10 | 1.8° | 0.1° |
| C7 | C8 | C9 | H3 | 178.2° | 179.9° |
| C11 | C10 | C9 | C8 | 1.4° | 0.1° |
| C11 | C10 | C9 | H18 | 180.0° | 179.9° |
| C11 | C10 | C9 | H3 | 178.6° | 179.9° |
| C8 | C9 | C10 | H3 | 180.0° | 180.0° |
| C9 | C8 | C7 | H17 | 178.3° | 180.0° |
| C8 | C9 | C10 | H18 | 178.6° | 180.0° |
| C10 | C9 | C8 | H1 | 178.2° | 180.0° |
| C9 | C10 | C11 | H19 | 179.0° | 180.0° |
| H1 | C8 | C9 | H3 | 1.8° | 0.0° |
| H1 | C8 | C7 | H17 | 1.7° | 0.1° |
| H3 | C9 | C10 | H18 | 1.4° | 0.0° |
| H4 | O6' | C6' | H5 | 59.9° | 59.9° |
| H4 | O6' | C6' | H6 | 59.9° | 60.0° |
| H5 | C6' | C5' | H7 | 47.8° | 175.0° |
| H6 | C6' | C5' | H7 | 72.0° | 65.0° |
| H7 | C5' | C4' | H8 | 173.4° | 177.7° |
| H8 | C4' | O4' | H9 | 62.8° | 59.8° |
| H8 | C4' | C3' | H13 | 171.0° | 177.2° |
| H10 | C1' | C2' | H11 | 179.5° | 177.7° |
| H11 | C2' | O2' | H12 | 61.7° | 59.9° |
| H11 | C2' | C3' | H13 | 176.1° | 177.2° |
| H13 | C3' | O3' | H14 | 62.7° | 59.8° |
| H18 | C10 | C11 | H19 | 1.0° | 0.1° |
