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Summary Geometry Related PDB entries

6LN

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	S2	sing	1.81Å	1.82Å
C2	C1	sing	1.53Å	1.53Å
C1	S1	sing	1.81Å	1.81Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
S1	H3	sing	1.34Å	1.30Å
C2	H4	sing	1.09Å	1.10Å
C2	H5	sing	1.09Å	1.10Å
S2	H6	sing	1.34Å	1.30Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S2	C2	C1	111.2°	109.5°
S2	C2	H4	109.0°	109.5°
S2	C2	H5	109.0°	109.5°
C2	S2	H6	102.0°	103.0°
C2	C1	S1	111.1°	109.5°
C2	C1	H1	109.1°	109.5°
C2	C1	H2	109.1°	109.5°
C1	C2	H4	109.1°	109.5°
C1	C2	H5	109.1°	109.5°
S1	C1	H1	109.1°	109.5°
S1	C1	H2	109.1°	109.5°
C1	S1	H3	102.0°	103.0°
H1	C1	H2	109.4°	109.5°
H4	C2	H5	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S2	C2	C1	H4	120.3°	120.0°
S2	C2	C1	H5	120.3°	120.0°
S2	C2	C1	S1	153.0°	180.0°
S2	C2	C1	H1	32.8°	60.0°
S2	C2	C1	H2	86.7°	60.0°
S2	C2	H4	H5	119.2°	120.0°
C2	C1	S1	H1	120.3°	120.0°
C2	C1	S1	H2	120.2°	120.0°
C2	C1	H1	H2	119.3°	120.0°
C2	C1	S1	H3	180.0°	180.0°
C1	C2	H4	H5	119.3°	120.0°
C1	C2	S2	H6	180.0°	180.0°
S1	C1	H1	H2	119.3°	120.0°
S1	C1	C2	H4	86.7°	60.0°
S1	C1	C2	H5	32.8°	60.0°
H1	C1	S1	H3	59.7°	60.0°
H1	C1	C2	H4	153.0°	180.0°
H1	C1	C2	H5	87.5°	60.0°
H2	C1	S1	H3	59.8°	60.0°
H2	C1	C2	H4	33.5°	60.0°
H2	C1	C2	H5	153.0°	180.0°
H4	C2	S2	H6	59.7°	60.0°
H5	C2	S2	H6	59.7°	60.0°

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PDB entries from 2026-01-14

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