Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6KD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
S26C25sing1.70Å1.71ÅAromatic
S26C27sing1.76Å1.73ÅAromatic
C25C24doub1.36Å1.37ÅAromatic
O34C33doub1.22Å1.23Å
C27C33sing1.42Å1.43Å
C27C28doub1.39Å1.39ÅAromatic
O23C22doub1.22Å1.24Å
C24C28sing1.46Å1.44ÅAromatic
C24C22sing1.47Å1.52Å
C33N31sing1.35Å1.39Å
C28N29sing1.36Å1.45Å
C22N20sing1.35Å1.38Å
N31C30sing1.36Å1.36Å
N20C19sing1.40Å1.43Å
N29C30doub1.30Å1.31Å
C18C19sing1.39Å1.40ÅAromatic
C18C17doub1.39Å1.39ÅAromatic
C19C11doub1.39Å1.41ÅAromatic
C17C16sing1.38Å1.39ÅAromatic
C14C13sing1.53Å1.51Å
C11O12sing1.36Å1.39Å
C11C10sing1.40Å1.42ÅAromatic
C16C10doub1.40Å1.40ÅAromatic
C13O12sing1.43Å1.46Å
C13C15sing1.53Å1.50Å
C10C8sing1.47Å1.51Å
C4N3sing1.47Å1.47Å
C2N3sing1.47Å1.48Å
C2C1sing1.53Å1.58Å
C5N3sing1.47Å1.47Å
C5C6sing1.54Å1.55Å
N7C8sing1.35Å1.37Å
N7C1sing1.47Å1.48Å
N7C6sing1.47Å1.48Å
C8O9doub1.22Å1.22Å
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C2H3sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C4H5sing1.09Å1.10Å
C4H6sing1.09Å1.10Å
C4H7sing1.09Å1.10Å
C5H8sing1.09Å1.10Å
C5H9sing1.09Å1.10Å
C6H10sing1.09Å1.10Å
C6H11sing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C14H14sing1.09Å1.10Å
C14H15sing1.09Å1.10Å
C14H16sing1.09Å1.10Å
C15H17sing1.09Å1.10Å
C15H18sing1.09Å1.10Å
C15H19sing1.09Å1.10Å
C25H20sing1.08Å1.08Å
N31H21sing0.97Å1.00Å
C30H22sing1.08Å1.08Å
N20H23sing0.97Å1.00Å
C18H24sing1.08Å1.08Å
C17H25sing1.08Å1.08Å
C16H26sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C25S26C2792.3°92.9°
S26C25C24112.7°111.8°
S26C25H20123.7°124.1°
S26C27C33127.5°131.0°
S26C27C28110.9°110.2°
C25C24C28111.9°113.8°
C25C24C22121.1°123.1°
C24C25H20123.6°124.1°
O34C33C27124.9°120.7°
O34C33N31122.0°120.7°
C33C27C28121.7°118.7°
C27C33N31113.2°118.7°
C27C28C24112.2°111.3°
C27C28N29121.3°118.8°
O23C22C24120.1°120.0°
O23C22N20123.8°120.0°
C28C24C22127.0°123.1°
C24C28N29126.5°129.9°
C24C22N20116.1°120.0°
C33N31C30124.0°120.1°
C33N31H21118.0°119.9°
C28N29C30114.6°121.7°
C22N20C19130.8°120.0°
C22N20H23114.6°120.0°
N31C30N29125.3°122.1°
C30N31H21118.0°120.0°
N31C30H22117.3°119.0°
N20C19C18122.9°120.0°
N20C19C11117.7°120.0°
C19N20H23114.6°120.0°
N29C30H22117.4°118.9°
C19C18C17119.9°120.3°
C18C19C11119.4°120.0°
C19C18H24120.0°119.8°
C18C17C16120.8°120.4°
C17C18H24120.1°119.9°
C18C17H25119.6°119.8°
C19C11O12117.4°120.2°
C19C11C10120.9°119.6°
C17C16C10121.1°120.0°
C16C17H25119.6°119.8°
C17C16H26119.4°120.0°
C14C13O12111.7°109.5°
C14C13C15114.3°109.4°
C14C13H13108.2°109.4°
C13C14H14109.5°109.4°
C13C14H15109.5°109.5°
C13C14H16109.4°109.4°
O12C11C10121.7°120.2°
C11O12C13122.6°117.0°
C11C10C16118.0°119.7°
C11C10C8124.5°120.2°
C16C10C8117.4°120.2°
C10C16H26119.5°120.0°
O12C13C15105.1°109.5°
O12C13H13109.0°109.5°
C15C13H13108.3°109.5°
C13C15H17109.5°109.4°
C13C15H18109.5°109.4°
C13C15H19109.5°109.5°
C10C8N7119.2°120.0°
C10C8O9118.3°120.0°
C4N3C2111.6°111.0°
C4N3C5110.6°111.1°
N3C4H5109.5°109.5°
N3C4H6109.5°109.4°
N3C4H7109.5°109.5°
N3C2C1111.2°109.4°
C2N3C5109.9°111.3°
N3C2H3109.0°109.5°
N3C2H4109.0°109.5°
C2C1N7112.3°108.7°
C2C1H1108.7°109.6°
C2C1H2108.7°109.6°
C1C2H3109.0°109.5°
C1C2H4109.1°109.5°
N3C5C6110.7°109.4°
N3C5H8109.1°109.5°
N3C5H9109.2°109.4°
C5C6N7112.1°108.4°
C6C5H8109.2°109.6°
C6C5H9109.2°109.4°
C5C6H10108.8°109.6°
C5C6H11108.8°109.6°
C8N7C1119.9°120.9°
C8N7C6119.4°120.9°
N7C8O9122.5°120.0°
C1N7C6112.1°118.3°
N7C1H1108.8°109.6°
N7C1H2108.8°109.7°
N7C6H10108.8°109.8°
N7C6H11108.8°109.7°
H1C1H2109.5°109.6°
H3C2H4109.5°109.5°
H5C4H6109.4°109.5°
H5C4H7109.5°109.5°
H6C4H7109.5°109.4°
H8C5H9109.5°109.5°
H10C6H11109.5°109.6°
H14C14H15109.5°109.5°
H14C14H16109.5°109.5°
H15C14H16109.5°109.6°
H17C15H18109.4°109.5°
H17C15H19109.5°109.5°
H18C15H19109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
S26C25C24H20180.0°179.9°
C25S26C27C33179.9°179.9°
C25S26C27C280.0°0.0°
S26C25C24C280.0°0.0°
S26C25C24C22179.7°180.0°
C27S26C25C240.0°0.0°
S26C27C33O340.3°0.0°
S26C27C33C28180.0°180.0°
S26C27C28C240.0°0.0°
S26C27C33N31179.9°179.7°
S26C27C28N29179.8°180.0°
C27S26C25H20180.0°179.9°
C25C24C28C270.0°0.0°
C25C24C22O230.5°180.0°
C25C24C28C22179.7°179.9°
C25C24C28N29179.8°180.0°
C25C24C22N20179.8°0.0°
O34C33C27N31179.9°179.7°
O34C33C27C28179.8°180.0°
O34C33N31C30179.8°180.0°
O34C33N31H210.1°0.0°
C33C27C28C24179.9°180.0°
C33C27C28N290.1°0.0°
C27C33N31C300.1°0.3°
C27C33N31H21180.0°179.8°
C27C28C24N29179.8°180.0°
C27C28C24C22179.7°180.0°
C28C27C33N310.1°0.2°
C27C28N29C300.1°0.2°
O23C22C24C28179.2°0.0°
O23C22C24N20179.7°180.0°
O23C22N20C193.3°3.7°
O23C22N20H23176.7°176.3°
C28C24C22N200.5°179.9°
C24C28N29C30179.9°179.7°
C28C24C25H20180.0°179.9°
C22C24C28N290.1°0.0°
C24C22N20C19176.4°176.4°
C22C24C25H200.3°0.1°
C24C22N20H233.6°3.7°
C33N31C30H21180.0°179.9°
C33N31C30N290.1°0.1°
C33N31C30H22179.9°179.9°
C28N29C30N310.1°0.2°
C28N29C30H22179.9°179.7°
C22N20C19H23180.0°179.9°
C22N20C19C1812.7°27.2°
C22N20C19C11168.1°152.7°
N31C30N29H22180.0°179.9°
N20C19C18C11179.2°179.9°
N20C19C18C17179.8°180.0°
N20C19C11O121.8°0.0°
N20C19C11C10179.6°179.9°
N20C19C18H240.2°0.1°
N29C30N31H21180.0°180.0°
C19C18C17H24180.0°179.9°
C19C18C17C160.2°0.4°
C18C19C11O12179.0°180.0°
C18C19C11C100.4°0.0°
C18C19N20H23167.3°152.7°
C19C18C17H25179.8°179.9°
C17C18C19C110.6°0.0°
C18C17C16H25180.0°179.7°
C18C17C16C100.5°0.7°
C18C17C16H26179.5°180.0°
C19C11O12C10178.6°180.0°
C19C11C10C160.3°0.3°
C19C11O12C13113.0°83.1°
C19C11C10C8178.4°180.0°
C11C19N20H2311.9°27.3°
C11C19C18H24179.4°180.0°
C17C16C10C110.7°0.6°
C17C16C10H26180.0°179.3°
C17C16C10C8178.9°179.7°
C16C17C18H24179.8°179.7°
C14C13O12C1160.9°144.6°
C14C13O12C15124.5°120.0°
C14C13O12H13119.6°120.0°
C14C13C15H13120.7°120.0°
C13C14H14H15120.0°120.0°
C13C14H14H16120.0°119.9°
C13C14H15H16120.0°120.0°
C14C13C15H17180.0°174.7°
C14C13C15H1860.0°54.7°
C14C13C15H1960.0°65.3°
O12C11C10C16178.3°179.7°
C11O12C13C15174.6°95.4°
O12C11C10C80.2°0.0°
C11O12C13H1358.6°24.6°
C11C10C16C8178.3°179.7°
C10C11O12C1368.4°96.9°
C11C10C8N7108.1°129.8°
C11C10C8O970.9°50.2°
C11C10C16H26179.3°179.9°
C16C10C8N773.8°50.0°
C16C10C8O9107.2°130.1°
C10C16C17H25179.5°179.7°
O12C13C15H13116.4°120.0°
O12C13C14H14180.0°60.0°
O12C13C14H1560.0°179.9°
O12C13C14H1660.0°60.0°
O12C13C15H1757.1°65.3°
O12C13C15H1862.8°174.7°
O12C13C15H19177.2°54.7°
C15C13C14H1460.8°60.0°
C15C13C14H1559.2°60.0°
C15C13C14H16179.2°180.0°
C13C15H17H18120.0°119.9°
C13C15H17H19120.0°120.0°
C13C15H18H19120.0°120.0°
C10C8N7O9178.9°179.9°
C10C8N7C196.5°175.2°
C10C8N7C6118.1°4.8°
C8C10C16H261.0°0.4°
C4N3C2C5123.0°124.2°
C4N3C2C1179.8°172.7°
C4N3C5C6176.8°172.9°
C4N3C2H359.9°67.3°
C4N3C2H459.6°52.7°
N3C4H5H6120.0°120.0°
N3C4H5H7120.0°120.0°
N3C4H6H7120.0°120.0°
C4N3C5H863.0°52.8°
C4N3C5H956.6°67.3°
N3C2C1H3120.3°119.9°
N3C2C1H4120.3°120.0°
C2N3C5C659.6°62.9°
N3C2C1N752.2°53.9°
N3C2C1H168.3°65.9°
N3C2C1H2172.6°173.8°
N3C2H3H4119.2°120.0°
C2N3C4H5180.0°60.0°
C2N3C4H660.0°180.0°
C2N3C4H760.0°60.0°
C2N3C5H860.6°177.0°
C2N3C5H9179.8°56.9°
C1C2N3C556.8°63.0°
C2C1N7C8162.7°128.8°
C2C1N7H1120.4°119.8°
C2C1N7H2120.4°119.8°
C2C1N7C649.6°51.2°
C2C1H1H2118.7°120.4°
C1C2H3H4119.2°120.1°
N3C5C6H8120.2°120.0°
N3C5C6H9120.2°119.9°
N3C5C6N757.8°53.7°
C5N3C2H3177.0°56.9°
C5N3C2H463.5°176.9°
C5N3C4H557.4°175.7°
C5N3C4H662.6°55.7°
C5N3C4H7177.4°64.3°
N3C5H8H9119.4°120.0°
N3C5C6H10178.2°173.5°
N3C5C6H1162.6°66.1°
C5C6N7C8159.6°129.0°
C5C6N7C152.5°51.0°
C5C6N7H10120.4°119.8°
C5C6N7H11120.4°119.7°
C6C5H8H9119.4°120.0°
C5C6H10H11118.8°120.4°
C8N7C1C6147.8°180.0°
C8N7C1H176.9°111.5°
C8N7C1H242.2°8.9°
C8N7C6H1039.2°9.2°
C8N7C6H1180.0°111.3°
C1N7C8O984.6°4.9°
N7C1H1H2118.7°120.4°
N7C1C2H3172.4°66.1°
N7C1C2H468.1°173.9°
C1N7C6H10172.9°170.8°
C1N7C6H1167.9°68.7°
C6N7C8O960.8°175.1°
C6N7C1H170.8°68.5°
C6N7C1H2170.0°171.1°
N7C6C5H862.4°173.7°
N7C6C5H9178.0°66.2°
N7C6H10H11118.8°120.6°
H1C1C2H352.0°174.2°
H1C1C2H4171.4°54.1°
H2C1C2H367.2°53.8°
H2C1C2H452.3°66.2°
H5C4H6H7120.0°120.0°
H8C5C6H1058.0°66.4°
H8C5C6H11177.2°53.9°
H9C5C6H1061.6°53.7°
H9C5C6H1157.6°174.0°
H13C13C14H1459.9°180.0°
H13C13C14H15180.0°60.0°
H13C13C14H1660.0°60.1°
H13C13C15H1759.3°54.7°
H13C13C15H18179.2°65.3°
H13C13C15H1960.8°174.7°
H14C14H15H16120.0°120.0°
H17C15H18H19120.0°120.1°
H21N31C30H220.0°0.1°
H24C18C17H250.2°0.0°
H25C17C16H260.5°0.4°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon